Rh5CG571100

Multiple C2 and transmembrane domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007819
Physical Location & Seq
Reverse (-)
80683350 .. 80685151
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG571100.1

Sequence Viewer

Length: 912 bp
ATGGCTCTCAGAGCTCACACAGTGACGTCAGCACCGACTTTCCATTCCCGCCAATTCCAAAGGCCCACATTCCCGCCCACAACTACTCTTCGCTTCAGAAACTCTTCATCAACCCGAGCGAACTCTCTCACCGCCGAACAAGTTTCCTTCACGGAGGAAGAGAACTCCCTCGTCGAAGCCCTCATCGGAATCCAAGGCCGCGGCCGCTCCGCCTCTCCGCAACAGCTCAATGAGGTTGAGAGTGCGGTAAAGGTTCTTGAAGCTCTGCAAGGAGTTCCTGAGCCGACAAGCTCGAGTTTAATTGAAGGGAGGTGGCAATTGATGTTCACTACAAGACCTGGAACTGCCTCTCCAATCCAAAGAACATTTGTGGGGGTGGACTTATTTAGTGTATTTCAAGAGGTTTATCTTCAGACAAAGGATCAGCGTGTATCTAATATTGTAAAGTTCTCTGATGCAATAGGCAGAAGCATCAATCAAGATGGGAAGCGAATACCTTTTCGATTTGACAAAGCAGCTTTTTCGTTTAAATTTTTACCATTTAAGGTTCCATATCCAGTGCCATTCAGACTTCTTGGAGATGAGCCAAAGGGTTGGTTGGATACCACATATCTGTCCCAATCTGGCAATCTTCGTATCTCAAGAGGAAATAAGGGAACAACATTTGTCCTGCAAAAGAAAGCTGAACCTAGGCAAAGACTATTGTCAGTCATCTCGACTGGTACAGGAGTTAAAGAGGCAATCGAGGAGTTTATCTCCTTAAATCAAAACATAGGTGATTTGGAACTCCAAGAGGGAGAATGGCAAATGGTTTGGAGTTCACAGAGGAAGATAGAGAATTCCAATGTTTCTTCACCAGAAAGTTTGGAACAGGCAGTGAGAGACTTAAGTTTGTACTGTTCAAGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 PRT_C

Protein Analysis

303

Amino Acids

34.0

Weight (kDa)

9.37

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 54 - 224 2.7e-37 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 207
AccII CGCG 1 cut(s) 201
AciI CCGC 9 cut(s) 49, 74, 132, 199, 201, 205, 210, 218, 245
AclWI GGATC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 2 cut(s) 530, 838
AcuI CTGAAG 2 cut(s) 79, 395
AcyI GRCGYC 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 2 cut(s) 724, 896
AflII CTTAAG 1 cut(s) 886
AgsI TTSAA 4 cut(s) 260, 305, 398, 903
AjnI CCWGG 1 cut(s) 337
AloI GAACNNNNNNTCC 2 cut(s) 334, 366
AluBI AGCT 6 cut(s) 14, 226, 263, 291, 518, 683
AluI AGCT 6 cut(s) 14, 226, 263, 291, 518, 683
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 876
AlwI GGATC 1 cut(s) 429
Ama87I CYCGRG 2 cut(s) 114, 292
AoxI GGCC 3 cut(s) 62, 196, 202
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 2 cut(s) 530, 838
Asp700I GAANNNNTTC 1 cut(s) 103
AspA2I CCTAGG 1 cut(s) 689
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 3 cut(s) 121, 788, 846
AvaI CYCGRG 2 cut(s) 114, 292
AvrII CCTAGG 1 cut(s) 689
BaeI ACNNNNGTAYC 2 cut(s) 714, 747
BanII GRGCYC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 527
BccI CCATC 1 cut(s) 476
BcgI CGANNNNNNTGC 2 cut(s) 504, 538
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 1 cut(s) 595
BcoDI GTCTC 1 cut(s) 876
BfaI CTAG 1 cut(s) 690
BfrI CTTAAG 1 cut(s) 886
BfuI GTATCC 1 cut(s) 595
BisI GCNGC 4 cut(s) 199, 202, 205, 516
BlnI CCTAGG 1 cut(s) 689
BlsI GCNGC 4 cut(s) 200, 203, 206, 517
Bme1390I CCNGG 1 cut(s) 339
BmeT110I CYCGRG 2 cut(s) 114, 292
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 549
BmrFI CCNGG 1 cut(s) 339
BmsI GCATC 2 cut(s) 445, 480
BoxI GACNNNNGTC 1 cut(s) 703
BplI GAGNNNNNCTC 2 cut(s) 740, 772
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 625
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 3 cut(s) 193, 199, 689
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bse1I ACTGG 2 cut(s) 557, 724
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 193, 199, 689
BseMII CTCAG 2 cut(s) 22, 270
BseNI ACTGG 2 cut(s) 557, 724
BseRI GAGGAG 1 cut(s) 761
BseX3I CGGCCG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 527
Bsh1236I CGCG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 3 cut(s) 64, 198, 204
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 16
BsiHKCI CYCGRG 2 cut(s) 114, 292
BslFI GGGAC 1 cut(s) 601
BsmAI GTCTC 1 cut(s) 876
BsmFI GGGAC 1 cut(s) 601
BsnI GGCC 3 cut(s) 64, 198, 204
BsoBI CYCGRG 2 cut(s) 114, 292
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 421
BspACI CCGC 9 cut(s) 49, 74, 132, 199, 201, 205, 210, 218, 245
BspANI GGCC 3 cut(s) 64, 198, 204
BspCNI CTCAG 2 cut(s) 21, 271
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 549
BspPI GGATC 1 cut(s) 429
BspTI CTTAAG 1 cut(s) 886
BsrBI CCGCTC 1 cut(s) 207
BsrI ACTGG 2 cut(s) 557, 724
BssECI CCNNGG 3 cut(s) 193, 199, 689
BssMI GATC 1 cut(s) 421
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 2 cut(s) 193, 689
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 22, 899
Bst6I CTCTTC 3 cut(s) 93, 109, 153
BstACI GRCGYC 1 cut(s) 26
BstAFI CTTAAG 1 cut(s) 886
BstDEI CTNAG 2 cut(s) 8, 279
BstDSI CCRYGG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 1 cut(s) 424
BstMAI GTCTC 1 cut(s) 876
BstMBI GATC 1 cut(s) 421
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 11, 204
BstNI CCWGG 1 cut(s) 339
BstPAI GACNNNNGTC 1 cut(s) 703
BstSCI CCNGG 1 cut(s) 337
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 527
BstXI CCANNNNNNTGG 1 cut(s) 594
BstZI CGGCCG 1 cut(s) 202
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 3 cut(s) 64, 198, 204
BtgI CCRYGG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 882
BtsIMutI CAGTG 3 cut(s) 27, 564, 882
CciNI GCGGCCGC 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 63
Cfr42I CCGCGG 1 cut(s) 202
Csp6I GTAC 2 cut(s) 723, 895
CviQI GTAC 2 cut(s) 723, 895
DdeI CTNAG 2 cut(s) 8, 279
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
DraI TTTAAA 1 cut(s) 529
DraIII CACNNNGTG 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 202
EagI CGGCCG 1 cut(s) 202
Eam1104I CTCTTC 3 cut(s) 93, 109, 153
EarI CTCTTC 3 cut(s) 93, 109, 153
EciI GGCGGA 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 14
EclXI CGGCCG 1 cut(s) 202
Eco130I CCWWGG 2 cut(s) 193, 689
Eco24I GRGCYC 1 cut(s) 16
Eco52I CGGCCG 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 79, 395
Eco88I CYCGRG 2 cut(s) 114, 292
EcoICRI GAGCTC 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 838
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 193, 689
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 2 cut(s) 193, 689
FaiI YATR 4 cut(s) 553, 610, 773, 910
FaqI GGGAC 1 cut(s) 601
FauI CCCGC 2 cut(s) 56, 81
Fnu4HI GCNGC 4 cut(s) 199, 202, 205, 516
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 4 cut(s) 199, 202, 205, 516
FspBI CTAG 1 cut(s) 690
GluI GCNGC 4 cut(s) 199, 202, 205, 516
HaeIII GGCC 3 cut(s) 64, 198, 204
Hin1I GRCGYC 1 cut(s) 26
HinfI GANTC 1 cut(s) 189
HphI GGTGA 3 cut(s) 121, 788, 846
Hpy166II GTNNAC 3 cut(s) 327, 379, 821
Hpy188I TCNGA 6 cut(s) 11, 98, 188, 414, 454, 569
Hpy188III TCNNGA 7 cut(s) 257, 278, 398, 479, 642, 715, 903
Hpy8I GTNNAC 3 cut(s) 327, 379, 821
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 157, 299
HpyCH4III ACNGT 2 cut(s) 22, 899
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 268, 458, 673
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 204
HpyF3I CTNAG 2 cut(s) 8, 279
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 26
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 1 cut(s) 421
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 1 cut(s) 527
LweI GCATC 2 cut(s) 445, 480
MaeI CTAG 1 cut(s) 690
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 423
MbiI CCGCTC 1 cut(s) 207
MboI GATC 1 cut(s) 421
MboII GAAGA 7 cut(s) 80, 96, 170, 401, 623, 841, 843
MfeI CAATTG 1 cut(s) 317
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 5 cut(s) 53, 300, 317, 530, 838
MmeI TCCRAC 1 cut(s) 579
MroXI GAANNNNTTC 1 cut(s) 103
MseI TTAA 6 cut(s) 299, 528, 543, 732, 761, 887
MspA1I CMGCKG 1 cut(s) 201
MspCI CTTAAG 1 cut(s) 886
MspR9I CCNGG 1 cut(s) 339
MunI CAATTG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 11, 204
NdeII GATC 1 cut(s) 421
NlaIV GGNNCC 1 cut(s) 549
NmuCI GTSAC 1 cut(s) 22
NotI GCGGCCGC 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 189
PkrI GCNGC 4 cut(s) 200, 203, 206, 517
PshAI GACNNNNGTC 1 cut(s) 703
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 549
PspPI GGNCC 1 cut(s) 63
PspXI VCTCGAGB 1 cut(s) 292
RsaI GTAC 2 cut(s) 724, 896
RsaNI GTAC 2 cut(s) 723, 895
SacI GAGCTC 1 cut(s) 16
SacII CCGCGG 1 cut(s) 202
SaqAI TTAA 6 cut(s) 299, 528, 543, 732, 761, 887
SatI GCNGC 4 cut(s) 199, 202, 205, 516
Sau3AI GATC 1 cut(s) 421
Sau96I GGNCC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 16
SfaNI GCATC 2 cut(s) 445, 480
Sfr274I CTCGAG 1 cut(s) 292
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SlaI CTCGAG 1 cut(s) 292
SmlI CTYRAG 3 cut(s) 292, 640, 886
SmoI CTYRAG 3 cut(s) 292, 640, 886
Sse9I AATT 5 cut(s) 53, 300, 317, 530, 838
SsiI CCGC 9 cut(s) 49, 74, 132, 199, 201, 205, 210, 218, 245
SspI AATATT 1 cut(s) 439
SspMI CTAG 1 cut(s) 690
SstI GAGCTC 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 2 cut(s) 193, 689
TaaI ACNGT 2 cut(s) 22, 899
TaiI ACGT 1 cut(s) 29
TaqI TCGA 5 cut(s) 174, 293, 502, 716, 744
TasI AATT 5 cut(s) 53, 300, 317, 530, 838
TatI WGTACW 1 cut(s) 894
TauI GCSGC 3 cut(s) 201, 204, 207
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 6 cut(s) 299, 528, 543, 732, 761, 887
Tru9I TTAA 6 cut(s) 299, 528, 543, 732, 761, 887
TscAI CASTG 3 cut(s) 27, 564, 882
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 3 cut(s) 27, 564, 882
Vha464I CTTAAG 1 cut(s) 886
XapI RAATTY 2 cut(s) 530, 838
XhoI CTCGAG 1 cut(s) 292
XmaJI CCTAGG 1 cut(s) 689
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 1 cut(s) 690
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.