Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012741

Physical Location & Seq

Genomic Coordinates Reverse (-)

19003219 .. 19005664

Gene Structure 2446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAAGATCCCTGCGGCTCTTGTCTTTATCCCTGTTGGTGTCCTCTTCTTGATCTCAGGGCTCATCGTCAACATCATTCAGCTTGTGTTCTTCATCATTGTTCGTCCATTCTCAAGAAGTTTGTATAGAAGAATAAACAAAAATGTTGCGGAATTACTTTGGTTGCAGCTCATATGGTTGTTTGATTGGTGGGCTTGTATAAAGATCAATTTATACGTCGATGCAGAGACTCTAGAGTTAATTGGGAAAGAACACGCACTTGTCTTAAGCAATCATCGAAGTGACATTGATTGGCTTATTGGATGGGTCATGGCTCAGCGTGTAGGTTGTCTTGGAAGCTCATTAGCCATCATGAAGAAAGAAGCCAAGTATCTTCCAATCATAGGTTGGTCGATGTGGTTTTCGGATTACATTTTCTTGGAAAGAAGTTGGGCTAAAGATGAGAATACCCTCAAGGCAGGTTTTAAACGACTTGAAGACTTTCCAATGACATTTTGGTTAGCTCTTTTCGTTGAAGGAACTCGTTTCACTCAGGAGAAGCTTGAAGCTGCTCAAGAGTACGCCTCTATCAGAAGCTTACCGTCTCCTCGAAATGTTTTGATTCCTCGTACAAAGGGATTTGTTTCGGCAGTGTCTGAAATACGGTCATTTGTTCCTGCAATATATGACTGTACCTTAACCGTTCATAACAATCAGCCTACACCAACTCTGCTTAGGATGTTCAGTGGACAATCATCTGAGATAAATTTGCAGATGAGACGTCACAAAATGAGTGAGTTGCCAGAAACCGATGATGGCATTGCACAATGGTGCCAAGATCTATTTATCACCAAGGATGCTCAACTTGAGAAATACTTCACAAAAGACGTTTTCAGCGACTTGGAAGTTCACCAAATTAACCGGCCAATCAAGCCATTAATCGTGGTCATCATTTGGTTAGGTTTCCTTGTATTCGGTGGTTTCAAGCTACTGCAATGGCTTTCAATAGTGGCCTCGTGGAAGATCATTCTTTTGTTTGTGTTCTTCTTGGTCATTGCAACTATAACAATGCAAATACTAATTCAATCGTCTGAGTCACAACGTTCAACTCCAGCCAAGAGACCTCTACAAGAACAGCTTATTTCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0008374 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

376

Amino Acids

43.43

Weight (kDa)

8.94

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	81 - 214	6e-14	Acyltransferase
Acyltransf_C	PF16076	239 - 312	7.3e-23	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51260
malus_domestica	MD00G1164400.v1.1 MD03G1176900.v1.1
prunus_persica	Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1
pyrus_communis	pycom03g13410 pycom11g17030
rosa_chinensis	RchiOBHm_Chr7g0219171
rosa_laevigata	RLG00000002305
rosa_roxburghii	Rroxscaffold_3G00240180
rosa_rugosa	Rorug07G0182800
rosa_samantha	Rh7AG326500 Rh7BG316300 Rh7CG343800 Rh7DG321800
rosa_wichuraiana	Rw7G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	763
Acc36I	ACCTGC	1 cut(s)	449
AccB1I	GGYRCC	1 cut(s)	810
AciI	CCGC	2 cut(s)	14, 149
AclI	AACGTT	1 cut(s)	1081
AcoI	YGGCCR	1 cut(s)	902
AcsI	RAATTY	1 cut(s)	745
AcyI	GRCGYC	1 cut(s)	760
AfaI	GTAC	3 cut(s)	560, 610, 673
AfiI	CCNNNNNNNGG	1 cut(s)	383
AflII	CTTAAG	1 cut(s)	265
AgsI	TTSAA	7 cut(s)	476, 515, 545, 964, 984, 1064, 1086
AleI	CACNNNNGTG	1 cut(s)	808
AluBI	AGCT	9 cut(s)	82, 169, 339, 503, 541, 548, 576, 967, 1117
AluI	AGCT	9 cut(s)	82, 169, 339, 503, 541, 548, 576, 967, 1117
Alw26I	GTCTC	4 cut(s)	221, 588, 751, 1093
AlwNI	CAGNNNCTG	1 cut(s)	635
AoxI	GGCC	2 cut(s)	902, 990
ApeKI	GCWGC	2 cut(s)	166, 548
ApoI	RAATTY	1 cut(s)	745
AseI	ATTAAT	1 cut(s)	917
Asp700I	GAANNNNTTC	2 cut(s)	480, 854
AsuHPI	GGTGA	2 cut(s)	820, 881
BanI	GGYRCC	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	994
BbsI	GAAGAC	1 cut(s)	483
BbvI	GCAGC	2 cut(s)	178, 535
BccI	CCATC	3 cut(s)	297, 356, 788
BcoDI	GTCTC	4 cut(s)	221, 588, 751, 1093
BfaI	CTAG	1 cut(s)	233
BfrI	CTTAAG	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	449
BglII	AGATCT	1 cut(s)	817
BisI	GCNGC	3 cut(s)	15, 167, 549
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	3 cut(s)	16, 168, 550
BmiI	GGNNCC	1 cut(s)	812
BmsI	GCATC	2 cut(s)	211, 826
BpiI	GAAGAC	1 cut(s)	483
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	1 cut(s)	1074
Bpu10I	CCTNAGC	1 cut(s)	713
Bpu1102I	GCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	4 cut(s)	97, 437, 537, 866
BsaHI	GRCGYC	1 cut(s)	760
BsaI	GGTCTC	1 cut(s)	1093
BsaJI	CCNNGG	1 cut(s)	831
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	900
Bse3DI	GCAATG	3 cut(s)	798, 980, 1032
BseDI	CCNNGG	1 cut(s)	831
BseGI	GGATG	3 cut(s)	308, 723, 841
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	3 cut(s)	798, 980, 1032
BseMII	CTCAG	5 cut(s)	69, 329, 545, 729, 1062
BseRI	GAGGAG	1 cut(s)	576
BseXI	GCAGC	2 cut(s)	178, 535
BshFI	GGCC	2 cut(s)	904, 992
BshNI	GGYRCC	1 cut(s)	810
BsiSI	CCGG	1 cut(s)	901
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	4 cut(s)	221, 588, 751, 1093
BsmBI	CGTCTC	2 cut(s)	588, 751
BsnI	GGCC	2 cut(s)	904, 992
Bso31I	GGTCTC	1 cut(s)	1093
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	5 cut(s)	6, 51, 204, 817, 1002
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	2 cut(s)	14, 149
BspANI	GGCC	2 cut(s)	904, 992
BspCNI	CTCAG	5 cut(s)	68, 328, 544, 730, 1063
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	812
BspMI	ACCTGC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	810
BspTI	CTTAAG	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	1093
BsrDI	GCAATG	3 cut(s)	798, 980, 1032
BsrFI	RCCGGY	1 cut(s)	900
BssAI	RCCGGY	1 cut(s)	900
BssECI	CCNNGG	1 cut(s)	831
BssMI	GATC	5 cut(s)	6, 51, 204, 817, 1002
BssNI	GRCGYC	1 cut(s)	760
BssSI	CACGAG	1 cut(s)	994
BssT1I	CCWWGG	1 cut(s)	831
Bst2BI	CACGAG	1 cut(s)	994
Bst4CI	ACNGT	4 cut(s)	582, 645, 671, 682
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	760
BstAFI	CTTAAG	1 cut(s)	265
BstDEI	CTNAG	7 cut(s)	55, 315, 531, 713, 738, 1071, 1128
BstF5I	GGATG	3 cut(s)	308, 723, 841
BstKTI	GATC	5 cut(s)	9, 54, 207, 820, 1005
BstMAI	GTCTC	4 cut(s)	221, 588, 751, 1093
BstMBI	GATC	5 cut(s)	6, 51, 204, 817, 1002
BstMWI	GCNNNNNNNGC	1 cut(s)	910
BstV1I	GCAGC	2 cut(s)	178, 535
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	2 cut(s)	6, 817
BstYI	RGATCY	2 cut(s)	6, 817
BsuRI	GGCC	2 cut(s)	904, 992
BtsCI	GGATG	3 cut(s)	308, 723, 841
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	2 cut(s)	636, 730
BveI	ACCTGC	1 cut(s)	449
CaiI	CAGNNNCTG	1 cut(s)	635
CciI	TCATGA	1 cut(s)	351
Cfr10I	RCCGGY	1 cut(s)	900
Csp6I	GTAC	3 cut(s)	559, 609, 672
CviAII	CATG	2 cut(s)	310, 352
CviQI	GTAC	3 cut(s)	559, 609, 672
DdeI	CTNAG	7 cut(s)	55, 315, 531, 713, 738, 1071, 1128
DpnI	GATC	5 cut(s)	8, 53, 206, 819, 1004
DpnII	GATC	5 cut(s)	6, 51, 204, 817, 1002
DraI	TTTAAA	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	902
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	831
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	1093
EcoT14I	CCWWGG	1 cut(s)	831
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	831
Esp3I	CGTCTC	2 cut(s)	588, 751
FaeI	CATG	2 cut(s)	313, 355
FalI	AAGNNNNNCTT	1 cut(s)	1101
FatI	CATG	2 cut(s)	309, 351
FauNDI	CATATG	1 cut(s)	173
Fnu4HI	GCNGC	3 cut(s)	15, 167, 549
FokI	GGATG	3 cut(s)	315, 730, 848
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	3 cut(s)	15, 167, 549
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	3 cut(s)	15, 167, 549
GsuI	CTGGAG	1 cut(s)	1074
HaeIII	GGCC	2 cut(s)	904, 992
HapII	CCGG	1 cut(s)	901
Hin1I	GRCGYC	1 cut(s)	760
Hin1II	CATG	2 cut(s)	313, 355
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	2 cut(s)	539, 574
HinfI	GANTC	3 cut(s)	229, 601, 1073
HpaII	CCGG	1 cut(s)	901
HphI	GGTGA	2 cut(s)	820, 881
Hpy166II	GTNNAC	3 cut(s)	70, 728, 889
Hpy188I	TCNGA	5 cut(s)	406, 572, 637, 739, 1072
Hpy188III	TCNNGA	6 cut(s)	49, 114, 233, 352, 533, 554
Hpy8I	GTNNAC	3 cut(s)	70, 728, 889
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	509
HpyCH4III	ACNGT	4 cut(s)	582, 645, 671, 682
HpyCH4IV	ACGT	4 cut(s)	216, 760, 867, 1081
HpyCH4V	TGCA	8 cut(s)	166, 224, 659, 751, 803, 973, 1037, 1051
HpyF10VI	GCNNNNNNNGC	1 cut(s)	910
HpyF3I	CTNAG	7 cut(s)	55, 315, 531, 713, 738, 1071, 1128
HpySE526I	ACGT	4 cut(s)	216, 760, 867, 1081
Hsp92I	GRCGYC	1 cut(s)	760
Hsp92II	CATG	2 cut(s)	313, 355
Kzo9I	GATC	5 cut(s)	6, 51, 204, 817, 1002
LpnPI	CCDG	9 cut(s)	24, 42, 45, 444, 518, 669, 795, 914, 1104
Lsp1109I	GCAGC	2 cut(s)	178, 535
LweI	GCATC	2 cut(s)	211, 826
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	4 cut(s)	216, 760, 867, 1081
MaeIII	GTNAC	3 cut(s)	281, 761, 1074
MalI	GATC	5 cut(s)	8, 53, 206, 819, 1004
MboI	GATC	5 cut(s)	6, 51, 204, 817, 1002
MboII	GAAGA	9 cut(s)	16, 37, 82, 141, 365, 367, 488, 1012, 1015
MflI	RGATCY	2 cut(s)	6, 817
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	6 cut(s)	152, 208, 240, 745, 894, 1059
MlyI	GAGTC	2 cut(s)	223, 1082
MnlI	CCTC	7 cut(s)	53, 461, 574, 597, 615, 1003, 1113
MroXI	GAANNNNTTC	2 cut(s)	480, 854
MseI	TTAA	6 cut(s)	239, 266, 465, 677, 897, 917
MslI	CAYNNNNRTG	2 cut(s)	279, 808
MspCI	CTTAAG	1 cut(s)	265
MspI	CCGG	1 cut(s)	901
MwoI	GCNNNNNNNGC	1 cut(s)	910
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	5 cut(s)	6, 51, 204, 817, 1002
NlaIII	CATG	2 cut(s)	313, 355
NlaIV	GGNNCC	1 cut(s)	812
NmuCI	GTSAC	3 cut(s)	281, 761, 1074
OliI	CACNNNNGTG	1 cut(s)	808
PagI	TCATGA	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	873
PdmI	GAANNNNTTC	2 cut(s)	480, 854
PfeI	GAWTC	1 cut(s)	601
PkrI	GCNGC	3 cut(s)	16, 168, 550
PleI	GAGTC	2 cut(s)	223, 1081
PpsI	GAGTC	2 cut(s)	223, 1081
PshBI	ATTAAT	1 cut(s)	917
Psp1406I	AACGTT	1 cut(s)	1081
PspN4I	GGNNCC	1 cut(s)	812
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	6, 817
RsaI	GTAC	3 cut(s)	560, 610, 673
RsaNI	GTAC	3 cut(s)	559, 609, 672
RseI	CAYNNNNRTG	2 cut(s)	279, 808
SaqAI	TTAA	6 cut(s)	239, 266, 465, 677, 897, 917
SatI	GCNGC	3 cut(s)	15, 167, 549
Sau3AI	GATC	5 cut(s)	6, 51, 204, 817, 1002
SchI	GAGTC	2 cut(s)	223, 1082
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	2 cut(s)	211, 826
SmiMI	CAYNNNNRTG	2 cut(s)	279, 808
SmlI	CTYRAG	5 cut(s)	112, 265, 452, 552, 845
SmoI	CTYRAG	5 cut(s)	112, 265, 452, 552, 845
Sse9I	AATT	6 cut(s)	152, 208, 240, 745, 894, 1059
SsiI	CCGC	2 cut(s)	14, 149
SspMI	CTAG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	4 cut(s)	582, 645, 671, 682
TaiI	ACGT	4 cut(s)	219, 763, 870, 1084
TaqI	TCGA	4 cut(s)	219, 277, 392, 589
TasI	AATT	6 cut(s)	152, 208, 240, 745, 894, 1059
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	6 cut(s)	239, 266, 465, 677, 897, 917
Tru9I	TTAA	6 cut(s)	239, 266, 465, 677, 897, 917
TscAI	CASTG	2 cut(s)	636, 730
TseFI	GTSAC	3 cut(s)	281, 761, 1074
TseI	GCWGC	2 cut(s)	166, 548
Tsp45I	GTSAC	3 cut(s)	281, 761, 1074
TspDTI	ATGAA	4 cut(s)	17, 82, 368, 674
TspRI	CASTG	2 cut(s)	636, 730
Vha464I	CTTAAG	1 cut(s)	265
VspI	ATTAAT	1 cut(s)	917
XapI	RAATTY	1 cut(s)	745
XbaI	TCTAGA	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	2 cut(s)	384, 492
XmnI	GAANNNNTTC	2 cut(s)	480, 854
XspI	CTAG	1 cut(s)	233
ZraI	GACGTC	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.