Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0012741

Physical Location & Seq

Genomic Coordinates Reverse (-)

37244000 .. 37253705

Gene Structure 9706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1164400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCCATCCCAGCTATAGTTGCCATTGTCCCCATCGGAGTTCTCTTGGTTCTCTCGGGCCTCATTGTTAATCTCATGCAGATAGTGTTTTCCATCCTTGTTCGTCCTGTATCAAAGAGTATGTATAGAAAGATCAACAAAGTAGTAGCAGAATTGCTGTGGTTGGAACTCATATGGCTCATTGATTGGTGGGCAGGCATCAAGGTTGAATTGTATGTAGATTCAGAAACTTTTCAATTAATGGGTAAAGAACGAGCACTTCTCATTTCCAATCACAAAAGTGACATTGATTGGCTTGTCGGATGGCTTGTAGCTCAGCGCTCAGGTTGCCTTGGTAGCACACTAGCCATCATGAAGAAAGAGATAATGTTCATCCCATTCATAGGTTGGTCAATGTGGTTTTCTGAATATGTCTTCTTGGAAAGGCAATGGACGAAAGATGAAAAAACGTTGAAGTCATGTTTCCGAAGACTAGAGGACTTCCCCGGCCCATTTTGGTTGGCTCTCTTTGTAGAAGGAACGCGATTTACACAGGCAAAGCTAATGGTAGCTCAAGAGTTTGCAGCTTCCAGAGGGTTGCCAATTCCTAGGAACGTCTTGCTTCCACGGACGAAGGGGTTTGTTTCATTAGTAAGTAACATGCGCTCATTTGTTCCGGCAATTTATGACTGTACAGTGGCCGTCCCCAACAATCAGCCACCACCTACATTGTTGAAAATATTAAGACGGCAATCTTCTGTGGTAAAATTACAAATCAGGAGACACTCAATGCGGGAGTTGCCAGAAACTGCTGATGGAATTGGACAGTGGTGTAAAGATGTGTTTGTTACCAAGGATGCCTTATTAGAGAAGTACTTTGCCAAAGGCTTATTCAGTGACCAACAACTTCAAAACATTGGCAGACCTATCAAGTCCTTAATTGTAAGATTCTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0008374 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

313

Amino Acids

35.81

Weight (kDa)

9.72

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	83 - 227	2.3e-17	Acyltransferase
Acyltransf_C	PF16076	240 - 311	3e-21	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51260
malus_domestica	MD00G1164400.v1.1 MD03G1176900.v1.1
prunus_persica	Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1
pyrus_communis	pycom03g13410 pycom11g17030
rosa_chinensis	RchiOBHm_Chr7g0219171
rosa_laevigata	RLG00000002305
rosa_roxburghii	Rroxscaffold_3G00240180
rosa_rugosa	Rorug07G0182800
rosa_samantha	Rh7AG326500 Rh7BG316300 Rh7CG343800 Rh7DG321800
rosa_wichuraiana	Rw7G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	523
AciI	CCGC	1 cut(s)	772
AclI	AACGTT	1 cut(s)	449
AcoI	YGGCCR	2 cut(s)	3, 678
AfaI	GTAC	2 cut(s)	673, 854
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	6 cut(s)	209, 236, 454, 715, 890, 934
AjuI	GAANNNNNNNTTGG	2 cut(s)	854, 886
AleI	CACNNNNGTG	1 cut(s)	279
AluBI	AGCT	5 cut(s)	14, 314, 541, 551, 566
AluI	AGCT	5 cut(s)	14, 314, 541, 551, 566
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	754
AlwNI	CAGNNNCTG	1 cut(s)	788
Ama87I	CYCGRG	1 cut(s)	55
Aor51HI	AGCGCT	1 cut(s)	320
AoxI	GGCC	4 cut(s)	3, 58, 487, 678
ApeKI	GCWGC	1 cut(s)	563
AseI	ATTAAT	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	231
AspA2I	CCTAGG	1 cut(s)	587
AspLEI	GCGC	2 cut(s)	321, 645
AspS9I	GGNCC	2 cut(s)	58, 488
AsuC2I	CCSGG	1 cut(s)	486
AvaI	CYCGRG	1 cut(s)	55
AvrII	CCTAGG	1 cut(s)	587
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	406, 475
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	6 cut(s)	14, 41, 101, 297, 356, 788
BceAI	ACGGC	2 cut(s)	665, 743
BcnI	CCSGG	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	754
BfaI	CTAG	3 cut(s)	344, 473, 588
BfmI	CTRYAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	322
BisI	GCNGC	1 cut(s)	564
BlnI	CCTAGG	1 cut(s)	587
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	565
BmcAI	AGTACT	1 cut(s)	854
Bme1390I	CCNGG	1 cut(s)	486
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	58, 488
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	2 cut(s)	207, 826
BpiI	GAAGAC	2 cut(s)	406, 475
BplI	GAGNNNNNCTC	2 cut(s)	246, 278
Bpu10I	CCTNAGC	1 cut(s)	322
Bpu1102I	GCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	486
BsaJI	CCNNGG	5 cut(s)	331, 484, 587, 605, 831
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	434
BseDI	CCNNGG	5 cut(s)	331, 484, 587, 605, 831
BseGI	GGATG	5 cut(s)	6, 93, 308, 372, 841
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	2 cut(s)	329, 336
BseXI	GCAGC	1 cut(s)	575
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	523
BshFI	GGCC	4 cut(s)	5, 60, 489, 680
BsiHKAI	GWGCWC	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	486, 656
BslFI	GGGAC	2 cut(s)	14, 668
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	754
BsmFI	GGGAC	2 cut(s)	14, 668
BsnI	GGCC	4 cut(s)	5, 60, 489, 680
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp1407I	TGTACA	1 cut(s)	671
Bsp143I	GATC	1 cut(s)	132
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	1 cut(s)	772
BspANI	GGCC	4 cut(s)	5, 60, 489, 680
BspCNI	CTCAG	2 cut(s)	328, 335
BspFNI	CGCG	1 cut(s)	523
BspHI	TCATGA	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	434
BsrGI	TGTACA	1 cut(s)	671
BssECI	CCNNGG	5 cut(s)	331, 484, 587, 605, 831
BssMI	GATC	1 cut(s)	132
BssT1I	CCWWGG	3 cut(s)	331, 587, 831
Bst4CI	ACNGT	3 cut(s)	671, 676, 807
BstAUI	TGTACA	1 cut(s)	671
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	315, 322
BstDSI	CCRYGG	1 cut(s)	605
BstF5I	GGATG	5 cut(s)	6, 93, 308, 372, 841
BstFNI	CGCG	1 cut(s)	523
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	2 cut(s)	321, 645
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	754
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 327, 336, 778
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	1 cut(s)	575
BstV2I	GAAGAC	2 cut(s)	406, 475
BsuRI	GGCC	4 cut(s)	5, 60, 489, 680
BtgI	CCRYGG	1 cut(s)	605
BtsCI	GGATG	5 cut(s)	6, 93, 308, 372, 841
BtsIMutI	CAGTG	3 cut(s)	681, 812, 880
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	788
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	2 cut(s)	321, 645
Cfr13I	GGNCC	2 cut(s)	58, 488
Csp6I	GTAC	2 cut(s)	672, 853
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviAII	CATG	4 cut(s)	76, 352, 459, 640
CviQI	GTAC	2 cut(s)	672, 853
DdeI	CTNAG	2 cut(s)	315, 322
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
EaeI	YGGCCR	2 cut(s)	3, 678
Eco130I	CCWWGG	3 cut(s)	331, 587, 831
Eco47III	AGCGCT	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	55
EcoT14I	CCWWGG	3 cut(s)	331, 587, 831
ErhI	CCWWGG	3 cut(s)	331, 587, 831
FaeI	CATG	4 cut(s)	79, 355, 462, 643
FalI	AAGNNNNNCTT	2 cut(s)	824, 856
FaqI	GGGAC	2 cut(s)	14, 668
FatI	CATG	4 cut(s)	75, 351, 458, 639
FauI	CCCGC	1 cut(s)	765
FauNDI	CATATG	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	4 cut(s)	80, 315, 359, 848
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	3 cut(s)	344, 473, 588
GlaI	GCGC	2 cut(s)	320, 644
GluI	GCNGC	1 cut(s)	564
GsaI	CCCAGC	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	4 cut(s)	5, 60, 489, 680
HapII	CCGG	2 cut(s)	486, 656
HhaI	GCGC	2 cut(s)	321, 645
Hin1II	CATG	4 cut(s)	79, 355, 462, 643
Hin6I	GCGC	2 cut(s)	319, 643
HinP1I	GCGC	2 cut(s)	319, 643
HinfI	GANTC	2 cut(s)	221, 927
HpaII	CCGG	2 cut(s)	486, 656
Hpy188I	TCNGA	5 cut(s)	38, 226, 302, 406, 467
Hpy188III	TCNNGA	4 cut(s)	352, 554, 570, 757
HpyAV	CCTTC	2 cut(s)	509, 607
HpyCH4III	ACNGT	3 cut(s)	671, 676, 807
HpyCH4IV	ACGT	2 cut(s)	449, 594
HpyCH4V	TGCA	2 cut(s)	79, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 327, 336, 778
HpyF3I	CTNAG	2 cut(s)	315, 322
HpySE526I	ACGT	2 cut(s)	449, 594
Hsp92II	CATG	4 cut(s)	79, 355, 462, 643
HspAI	GCGC	2 cut(s)	319, 643
Kzo9I	GATC	1 cut(s)	132
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	2 cut(s)	207, 826
MaeI	CTAG	3 cut(s)	344, 473, 588
MaeII	ACGT	2 cut(s)	449, 594
MaeIII	GTNAC	4 cut(s)	281, 635, 826, 875
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	5 cut(s)	367, 406, 480, 726, 922
MfeI	CAATTG	1 cut(s)	934
MhlI	GDGCHC	1 cut(s)	259
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	152, 209, 236, 582, 660, 746, 798, 918, 934
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	144, 280
MnlI	CCTC	3 cut(s)	71, 469, 566
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	69, 239, 722, 917
MslI	CAYNNNNRTG	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	486, 656
MspR9I	CCNGG	1 cut(s)	486
MunI	CAATTG	1 cut(s)	934
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 327, 336, 778
NciI	CCSGG	1 cut(s)	486
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	4 cut(s)	79, 355, 462, 643
NmuCI	GTSAC	2 cut(s)	281, 875
NspI	RCATGY	1 cut(s)	643
OliI	CACNNNNGTG	1 cut(s)	279
PagI	TCATGA	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	221, 927
PkrI	GCNGC	1 cut(s)	565
PshBI	ATTAAT	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	449
PspFI	CCCAGC	1 cut(s)	10
PspPI	GGNCC	2 cut(s)	58, 488
PsrI	GAACNNNNNNTAC	2 cut(s)	511, 543
PstNI	CAGNNNCTG	1 cut(s)	788
RsaI	GTAC	2 cut(s)	673, 854
RsaNI	GTAC	2 cut(s)	672, 853
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	4 cut(s)	69, 239, 722, 917
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	2 cut(s)	58, 488
ScaI	AGTACT	1 cut(s)	854
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	1 cut(s)	259
SfaNI	GCATC	2 cut(s)	207, 826
SfcI	CTRYAG	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
Sse9I	AATT	9 cut(s)	152, 209, 236, 582, 660, 746, 798, 918, 934
SsiI	CCGC	1 cut(s)	772
SspI	AATATT	1 cut(s)	720
SspMI	CTAG	3 cut(s)	344, 473, 588
StyD4I	CCNGG	1 cut(s)	484
StyI	CCWWGG	3 cut(s)	331, 587, 831
TaaI	ACNGT	3 cut(s)	671, 676, 807
TaiI	ACGT	2 cut(s)	452, 597
TasI	AATT	9 cut(s)	152, 209, 236, 582, 660, 746, 798, 918, 934
TatI	WGTACW	2 cut(s)	671, 852
TfiI	GAWTC	2 cut(s)	221, 927
Tru1I	TTAA	4 cut(s)	69, 239, 722, 917
Tru9I	TTAA	4 cut(s)	69, 239, 722, 917
TscAI	CASTG	3 cut(s)	681, 812, 880
TseFI	GTSAC	2 cut(s)	281, 875
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	2 cut(s)	281, 875
TspDTI	ATGAA	5 cut(s)	361, 368, 370, 456, 615
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	3 cut(s)	681, 812, 880
VspI	ATTAAT	1 cut(s)	239
XceI	RCATGY	1 cut(s)	643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XmaJI	CCTAGG	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	3 cut(s)	344, 473, 588
ZrmI	AGTACT	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.