Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012741

Physical Location & Seq

Genomic Coordinates Forward (+)

19006165 .. 19008987

Gene Structure 2823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAAGAAAGAGATAATGTTCATCCCAGTGAGTTTTTACTCAGTCATAGGTTGGTCAATGTGGTTTTCTGAATATGTCTTCTTGGAAAGGCGATGGACGAAAGATGAAAACACGTTGAAGTCAGGTTTCCGAAGACTAGAGGACTTCCCCGTCCCATTTTGGTTGGCTCTCTTTGTAGAAGGAACGCGATTTACACAGGCAAAGCTAATGGTAGCTCAAGAGTTTGCAGCTTCCAGGGGGTTGCCAATTCCTAGGAACGTCTTGCTTCCACGGACGAAGGGGTTTGTTTCATCAGTAAGTAACATGCGCTCATTTGTTCCGGCAATTTATGATTGTACAGTGGCCGTCCCCAACAATCAGCCACCACCTACATTGTTGAAAATATTAAGACGGCAATCTTCTGTGGTAAAATTACAAATCAGGAGACACTCAATGCGGGAGTTGCCAGAAACTGCTGATGGAATTGGACAGTGGTGTAAAGATGTGTTTGTTACCAAGGATGCCTTATTAGAGAAGAACTTTGCCAAAGGCTCATTCAGTGATCAGCAACTTCAAAACATTGGCAGACCTATCAAGTCCTTAATTGTCGTCGTATTCTGGTCGATCCTCCAGGCCTATGGAATTTACAAATTTGTGCAGTGGTCTGCCCTCCTAACCTCATGGCAAGGCATTGCATTTTCAGCAACATTCTTGGTTCTTATTGGAATTATCATGCAAGTTCTCATCCAGTCATCCGAGTCGGAGCGTTATACACCTCTAACAGTACCCCCAAAAGACCCAGCACAGCAGCGACTCATTCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0008374 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

269

Amino Acids

30.79

Weight (kDa)

9.93

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51260
malus_domestica	MD00G1164400.v1.1 MD03G1176900.v1.1
prunus_persica	Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1
pyrus_communis	pycom03g13410 pycom11g17030
rosa_chinensis	RchiOBHm_Chr7g0219171
rosa_laevigata	RLG00000002305
rosa_roxburghii	Rroxscaffold_3G00240180
rosa_rugosa	Rorug07G0182800
rosa_samantha	Rh7AG326500 Rh7BG316300 Rh7CG343800 Rh7DG321800
rosa_wichuraiana	Rw7G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AccII	CGCG	1 cut(s)	187
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	1 cut(s)	598
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	621, 629
AfaI	GTAC	2 cut(s)	337, 765
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	3 cut(s)	118, 379, 554
AjnI	CCWGG	2 cut(s)	233, 609
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AluBI	AGCT	3 cut(s)	205, 215, 230
AluI	AGCT	3 cut(s)	205, 215, 230
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	598
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	342, 612
ApeKI	GCWGC	2 cut(s)	227, 787
ApoI	RAATTY	2 cut(s)	621, 629
AspA2I	CCTAGG	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	309
AvrII	CCTAGG	1 cut(s)	251
BbsI	GAAGAC	2 cut(s)	70, 139
BbvI	GCAGC	2 cut(s)	239, 799
BccI	CCATC	2 cut(s)	87, 452
BceAI	ACGGC	2 cut(s)	329, 407
BciT130I	CCWGG	2 cut(s)	235, 611
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	2 cut(s)	137, 252
BisI	GCNGC	2 cut(s)	228, 788
BlnI	CCTAGG	1 cut(s)	251
BlsI	GCNGC	2 cut(s)	229, 789
Bme1390I	CCNGG	2 cut(s)	235, 611
BmrFI	CCNGG	2 cut(s)	235, 611
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	490
BmuI	ACTGGG	1 cut(s)	20
BpiI	GAAGAC	2 cut(s)	70, 139
BpmI	CTGGAG	1 cut(s)	593
BpuEI	CTTGAG	1 cut(s)	201
BsaJI	CCNNGG	4 cut(s)	234, 251, 269, 495
Bse1I	ACTGG	2 cut(s)	26, 727
Bse3DI	GCAATG	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	235, 611
BseDI	CCNNGG	4 cut(s)	234, 251, 269, 495
BseGI	GGATG	4 cut(s)	21, 505, 723, 731
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	26, 727
BseXI	GCAGC	2 cut(s)	239, 799
BseYI	CCCAGC	1 cut(s)	778
BsgI	GTGCAG	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	344, 614
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	2 cut(s)	137, 332
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	2 cut(s)	137, 332
BsnI	GGCC	2 cut(s)	344, 614
Bsp1407I	TGTACA	1 cut(s)	335
Bsp143I	GATC	2 cut(s)	541, 603
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	2 cut(s)	344, 614
BspCNI	CTCAG	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	187
BspPI	GGATC	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	669
BsrGI	TGTACA	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	26, 727
BssECI	CCNNGG	4 cut(s)	234, 251, 269, 495
BssMI	GATC	2 cut(s)	541, 603
BssT1I	CCWWGG	2 cut(s)	251, 495
Bst2UI	CCWGG	2 cut(s)	235, 611
Bst4CI	ACNGT	3 cut(s)	340, 471, 763
BstAUI	TGTACA	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	40
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	4 cut(s)	21, 505, 723, 731
BstFNI	CGCG	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	2 cut(s)	544, 606
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	2 cut(s)	541, 603
BstMWI	GCNNNNNNNGC	2 cut(s)	442, 680
BstNI	CCWGG	2 cut(s)	235, 611
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	233, 609
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	239, 799
BstV2I	GAAGAC	2 cut(s)	70, 139
BstXI	CCANNNNNNTGG	1 cut(s)	617
BsuRI	GGCC	2 cut(s)	344, 614
BtgI	CCRYGG	1 cut(s)	269
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	4 cut(s)	21, 505, 723, 731
BtsI	GCAGTG	1 cut(s)	644
BtsIMutI	CAGTG	5 cut(s)	33, 345, 476, 544, 644
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	336, 764
CspCI	CAANNNNNGTGG	2 cut(s)	354, 389
CviAII	CATG	3 cut(s)	304, 660, 712
CviJI	RGCY	8 cut(s)	167, 205, 215, 230, 344, 361, 531, 614
CviKI_1	RGCY	8 cut(s)	167, 205, 215, 230, 344, 361, 531, 614
CviQI	GTAC	2 cut(s)	336, 764
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	2 cut(s)	543, 605
DpnII	GATC	2 cut(s)	541, 603
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	251, 495
Eco147I	AGGCCT	1 cut(s)	614
EcoRII	CCWGG	2 cut(s)	233, 609
EcoT14I	CCWWGG	2 cut(s)	251, 495
ErhI	CCWWGG	2 cut(s)	251, 495
FaeI	CATG	3 cut(s)	307, 663, 715
FaiI	YATR	8 cut(s)	47, 75, 305, 330, 618, 661, 713, 750
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	2 cut(s)	137, 332
FatI	CATG	3 cut(s)	303, 659, 711
FauI	CCCGC	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	2 cut(s)	228, 788
FokI	GGATG	4 cut(s)	8, 512, 710, 718
Fsp4HI	GCNGC	2 cut(s)	228, 788
FspBI	CTAG	2 cut(s)	137, 252
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	2 cut(s)	228, 788
GsaI	CCCAGC	1 cut(s)	782
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	2 cut(s)	344, 614
HapII	CCGG	1 cut(s)	320
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	307, 663, 715
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	737, 792
HpaII	CCGG	1 cut(s)	320
Hpy188I	TCNGA	5 cut(s)	70, 131, 736, 742, 801
Hpy188III	TCNNGA	2 cut(s)	218, 421
Hpy99I	CGWCG	1 cut(s)	593
HpyAV	CCTTC	2 cut(s)	173, 271
HpyCH4III	ACNGT	3 cut(s)	340, 471, 763
HpyCH4IV	ACGT	2 cut(s)	113, 258
HpyCH4V	TGCA	4 cut(s)	227, 637, 674, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	442, 680
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	2 cut(s)	113, 258
Hsp92II	CATG	3 cut(s)	307, 663, 715
HspAI	GCGC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	2 cut(s)	541, 603
LmnI	GCTCC	1 cut(s)	742
Lsp1109I	GCAGC	2 cut(s)	239, 799
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	2 cut(s)	137, 252
MaeII	ACGT	2 cut(s)	113, 258
MaeIII	GTNAC	2 cut(s)	299, 490
MalI	GATC	2 cut(s)	543, 605
MboI	GATC	2 cut(s)	541, 603
MboII	GAAGA	5 cut(s)	16, 70, 144, 390, 526
MluCI	AATT	8 cut(s)	246, 324, 410, 462, 582, 621, 629, 705
MlyI	GAGTC	2 cut(s)	746, 786
MmeI	TCCRAC	1 cut(s)	720
MnlI	CCTC	5 cut(s)	133, 617, 659, 667, 765
MseI	TTAA	2 cut(s)	386, 581
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	2 cut(s)	235, 611
MvaI	CCWGG	2 cut(s)	235, 611
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	442, 680
NdeII	GATC	2 cut(s)	541, 603
NlaIII	CATG	3 cut(s)	307, 663, 715
NspI	RCATGY	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	614
PkrI	GCNGC	2 cut(s)	229, 789
PleI	GAGTC	2 cut(s)	745, 786
PpsI	GAGTC	2 cut(s)	745, 786
Psp6I	CCWGG	2 cut(s)	233, 609
PspFI	CCCAGC	1 cut(s)	778
PspGI	CCWGG	2 cut(s)	233, 609
PsrI	GAACNNNNNNTAC	2 cut(s)	175, 207
PstNI	CAGNNNCTG	1 cut(s)	452
RsaI	GTAC	2 cut(s)	337, 765
RsaNI	GTAC	2 cut(s)	336, 764
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	386, 581
SatI	GCNGC	2 cut(s)	228, 788
Sau3AI	GATC	2 cut(s)	541, 603
SchI	GAGTC	2 cut(s)	746, 786
ScrFI	CCNGG	2 cut(s)	235, 611
SfaNI	GCATC	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	8 cut(s)	246, 324, 410, 462, 582, 621, 629, 705
SseBI	AGGCCT	1 cut(s)	614
SsiI	CCGC	1 cut(s)	436
SspI	AATATT	1 cut(s)	384
SspMI	CTAG	2 cut(s)	137, 252
StuI	AGGCCT	1 cut(s)	614
StyD4I	CCNGG	2 cut(s)	233, 609
StyI	CCWWGG	2 cut(s)	251, 495
TaaI	ACNGT	3 cut(s)	340, 471, 763
TaiI	ACGT	2 cut(s)	116, 261
TaqI	TCGA	1 cut(s)	602
TasI	AATT	8 cut(s)	246, 324, 410, 462, 582, 621, 629, 705
TatI	WGTACW	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	386, 581
Tru9I	TTAA	2 cut(s)	386, 581
TscAI	CASTG	5 cut(s)	33, 345, 476, 544, 644
TseI	GCWGC	2 cut(s)	227, 787
TspDTI	ATGAA	4 cut(s)	10, 17, 120, 279
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	5 cut(s)	33, 345, 476, 544, 644
XapI	RAATTY	2 cut(s)	621, 629
XceI	RCATGY	1 cut(s)	307
XmaJI	CCTAGG	1 cut(s)	251
XspI	CTAG	2 cut(s)	137, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.