Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0012741

Physical Location & Seq

Genomic Coordinates Forward (+)

14420776 .. 14421912

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTGGTTTTCTGATTATGTCTTCTTGGAAAGAAGATGGACAAAAGATGAAAGCACATTGAAGTCAGGTTTTCGAAGACTAGAGGACTTCCCCATGCCTTTTTGGTTGGCTCTCTTTGTAGAAGGAACACGATTTACGCAGGCAAAGCTAATGGTAGCTCAAGAGTTTGCAGCTTCTAGAGGGTTGCCTATTCCTAGGAACGTCTTGCTTCCACGGACGAAGGTGGCATTTCGTGCTGGCCTGGTGTGCCGTTGCATCCTTATGCATGATCTTGTTTATGGGACTTATGCTTCTGCTAAAATTCTAGGCCATAACTTCTGGAAAAATGCAATGGGGCTGACATATTATCAACTGTATCTGCTTCCATGTAGAACTGAGGCCAACAGTTGTGGGAATAGGTTCGGAAATAATGTTACTAACTATAAGGAATTCCGATTGTTGCAGTTAAAATTACAAATCAGGAGACACTCAATGCAGGAGTTGCCAGAAACGGCTGATGGAATTGGACAATGGTGTAAAGATGTGTTTGTTACCAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0008374 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

181

Amino Acids

21.03

Weight (kDa)

9.61

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51260
malus_domestica	MD00G1164400.v1.1 MD03G1176900.v1.1
prunus_persica	Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1
pyrus_communis	pycom03g13410 pycom11g17030
rosa_chinensis	RchiOBHm_Chr7g0219171
rosa_laevigata	RLG00000002305
rosa_roxburghii	Rroxscaffold_3G00240180
rosa_rugosa	Rorug07G0182800
rosa_samantha	Rh7AG326500 Rh7BG316300 Rh7CG343800 Rh7DG321800
rosa_wichuraiana	Rw7G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	300, 428
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	148, 158, 173
AluI	AGCT	3 cut(s)	148, 158, 173
Alw26I	GTCTC	1 cut(s)	457
AoxI	GGCC	3 cut(s)	238, 307, 378
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	2 cut(s)	300, 428
Asp700I	GAANNNNTTC	1 cut(s)	398
AspA2I	CCTAGG	1 cut(s)	194
AsuII	TTCGAA	1 cut(s)	73
AvrII	CCTAGG	1 cut(s)	194
BbsI	GAAGAC	2 cut(s)	13, 82
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	2 cut(s)	30, 491
BceAI	ACGGC	2 cut(s)	234, 507
BciT130I	CCWGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	4 cut(s)	80, 177, 195, 305
BisI	GCNGC	1 cut(s)	171
BlnI	CCTAGG	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	264
BpiI	GAAGAC	2 cut(s)	13, 82
Bpu14I	TTCGAA	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	194, 212, 534
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	3 cut(s)	194, 212, 534
BseGI	GGATG	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	182
BshFI	GGCC	3 cut(s)	240, 309, 380
BslFI	GGGAC	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	240, 309, 380
Bsp119I	TTCGAA	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	268
BspANI	GGCC	3 cut(s)	240, 309, 380
BspCNI	CTCAG	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	194, 212, 534
BssMI	GATC	1 cut(s)	268
BssT1I	CCWWGG	2 cut(s)	194, 534
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	354, 386
BstAPI	GCANNNNNTGC	2 cut(s)	233, 481
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	141, 238
BstDEI	CTNAG	1 cut(s)	375
BstDSI	CCRYGG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	255
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 233, 246, 481
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	2 cut(s)	13, 82
BsuRI	GGCC	3 cut(s)	240, 309, 380
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	141, 238
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	3 cut(s)	94, 266, 366
CviJI	RGCY	9 cut(s)	110, 148, 158, 173, 240, 309, 337, 380, 494
CviKI_1	RGCY	9 cut(s)	110, 148, 158, 173, 240, 309, 337, 380, 494
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eco130I	CCWWGG	2 cut(s)	194, 534
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	2 cut(s)	194, 534
EcoT22I	ATGCAT	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	194, 534
FaeI	CATG	3 cut(s)	97, 269, 369
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	3 cut(s)	93, 265, 365
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	4 cut(s)	80, 177, 195, 305
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	3 cut(s)	240, 309, 380
Hin1II	CATG	3 cut(s)	97, 269, 369
Hpy188I	TCNGA	3 cut(s)	13, 404, 434
Hpy188III	TCNNGA	4 cut(s)	161, 177, 319, 460
HpyAV	CCTTC	2 cut(s)	116, 214
HpyCH4III	ACNGT	2 cut(s)	354, 386
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	6 cut(s)	170, 255, 265, 329, 442, 475
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 233, 246, 481
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	97, 269, 369
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	9 cut(s)	51, 125, 222, 227, 254, 304, 445, 461, 498
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	4 cut(s)	80, 177, 195, 305
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	412, 529
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	3 cut(s)	13, 45, 87
MluCI	AATT	4 cut(s)	300, 428, 449, 501
MnlI	CCTC	3 cut(s)	76, 173, 370
Mph1103I	ATGCAT	1 cut(s)	267
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	1 cut(s)	446
MslI	CAYNNNNRTG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	145, 233, 246, 481
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	3 cut(s)	97, 269, 369
NsiI	ATGCAT	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	398
PkrI	GCNGC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PsrI	GAACNNNNNNTAC	2 cut(s)	118, 150
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	8 cut(s)	70, 150, 160, 175, 204, 225, 401, 540
SfaNI	GCATC	1 cut(s)	264
SfuI	TTCGAA	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	4 cut(s)	300, 428, 449, 501
SspMI	CTAG	4 cut(s)	80, 177, 195, 305
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	2 cut(s)	194, 534
TaaI	ACNGT	2 cut(s)	354, 386
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	73
TasI	AATT	4 cut(s)	300, 428, 449, 501
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	229
XapI	RAATTY	2 cut(s)	300, 428
XbaI	TCTAGA	1 cut(s)	176
XmaJI	CCTAGG	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	4 cut(s)	80, 177, 195, 305
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.