MD03G1176900.v1.1

1-acyl-sn-glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
24311076 .. 24320771
9696 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1176900.v1.1.491

Sequence Viewer

Length: 1290 bp
ATGACCCCAAAAAGGTCTCCTCTCTGTCCCCCGTTGAATCTGTGTCTCTTTGTCTCCAAATTCAAAGCCAAAACCGCCGCTGCCGGCGCCGCCTCACATTCCATGGCCATCCCAGCTGTAGTTGCCATCTTACCTGTCGGCGTTCTCTTCATTCTCTCTGGCCTCATTGTTAATCTCATGCAGATAGTGTGCTTCCTCCTTGTTCGTCCTGTATCAAAGAGAATGTATAGAAAGATCAACAAACTAGTAGCAGAATTGCTGTGGTTGGAGCTCATATGGCTCATTGATTGGTGGGCAGGAATCAAGGCATGCTTCTTTCTTAAAGTTAATTCTTTCAGTCGAAGAGAGGGATTTAAGATTTTGATGGCAAAAGAAAGAGAAGTTGAACTTTGTAAAGAACATGCACTTGTCATTTCCAATCACAAAAGTGACATTGATTGGCTTGTCGGATGGCTTGTAGCTCAGCGCTCAGGTTGCCTTGGTAGCGCACTAGCCATCATAAAGAAAGAAATAATGTTCCTCCCAGTCATCGGTTGGTCAATGTGGTTTTCTGAATATGTCTTCTTGCAAAGAAGATGGACAAAAGATGAAAGCACATTGAAGTCAGGTTTTCGAAGACTAGAGGACTTCCCCATGCCTTTTTGGTTGGCTCTCTTTGTAGAAGGAACACGATTTACGCAGGCAAAGTTAATGGCAGCTCAAGAGTTTGCAGCTTCTAGAGGGTTGCCTATTCCTAGGAACGTCTTGCTTCCACGGACGAAGGGGTTTGTTTCATCGGTAATCCATATGCGCTCTTTCATTCCAGCAATTTATGACTGTACACTGGCCGTCCCCAACAATCAGCCACCACCTACATTGTTGAGAATATTCAGAGGGCAATCTTCTGTGTTAAAATTACAAATCAGGAGACACTCAATGCAGGAGTTGCCAGAAACGGCCGATGGAATTGGACAATGGTGTAAAGATGTGTTTGTTACCAAGGATGCCTTATTGGAGAAGTACTTTGCCAAAGGTTCATTCAGTGACCAACAACTTCAAAACATTGGCAGACCTACCAAGTCCTTAATTGTTGTCATACTTTGGTCGATCCTCCTTGCCTATGGAATTTACAAATTTGTGCAATGCTCTGCCCTCCTAGCCTCATGGGAAGGCATTGCATTTTCAGCAACATTCTTGGTCCTTATTGTAATTGTCATGCAAATTCTCATCCAGTCATCTGAGTCAGAGCGTTCTACTGCTCTCACGGTACCCCAAAAAGACCCATCACAGCAGCGACTCATTCAGAAATGA

Protein Analysis

430

Amino Acids

48.58

Weight (kDa)

9.8

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 132 - 269 2.2e-14 Acyltransferase
Acyltransf_C PF16076 288 - 361 1.6e-23 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1246
AccB1I GGYRCC 2 cut(s) 86, 1246
AciI CCGC 3 cut(s) 75, 78, 90
AclWI GGATC 1 cut(s) 1081
AcoI YGGCCR 3 cut(s) 105, 825, 936
AcsI RAATTY 4 cut(s) 59, 1104, 1112, 1200
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 820, 1001, 1248
AfeI AGCGCT 1 cut(s) 467
AfiI CCNNNNNNNGG 2 cut(s) 12, 530
AgsI TTSAA 5 cut(s) 37, 64, 386, 601, 1037
AhlI ACTAGT 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 1001, 1033
AleI CACNNNNGTG 1 cut(s) 426
AluBI AGCT 5 cut(s) 116, 271, 461, 698, 713
AluI AGCT 5 cut(s) 116, 271, 461, 698, 713
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 4 cut(s) 21, 50, 58, 901
AlwI GGATC 1 cut(s) 1081
Aor51HI AGCGCT 1 cut(s) 467
AoxI GGCC 4 cut(s) 105, 160, 825, 936
ApeKI GCWGC 4 cut(s) 80, 695, 710, 1270
ApoI RAATTY 4 cut(s) 59, 1104, 1112, 1200
Asp718I GGTACC 1 cut(s) 1246
AspA2I CCTAGG 1 cut(s) 734
AspLEI GCGC 4 cut(s) 89, 468, 488, 792
AspS9I GGNCC 1 cut(s) 1177
AsuII TTCGAA 1 cut(s) 613
AvaII GGWCC 1 cut(s) 1177
AvrII CCTAGG 1 cut(s) 734
BalI TGGCCA 1 cut(s) 107
BanI GGYRCC 2 cut(s) 86, 1246
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 553, 622
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 4 cut(s) 67, 707, 722, 1282
BccI CCATC 8 cut(s) 116, 134, 358, 444, 503, 570, 935, 1270
BceAI ACGGC 2 cut(s) 812, 951
BcoDI GTCTC 4 cut(s) 21, 50, 58, 901
BcuI ACTAGT 1 cut(s) 244
BfaI CTAG 6 cut(s) 245, 491, 620, 717, 735, 1136
BfmI CTRYAG 1 cut(s) 117
BfoI RGCGCY 2 cut(s) 90, 469
BisI GCNGC 6 cut(s) 78, 81, 90, 696, 711, 1271
BlnI CCTAGG 1 cut(s) 734
BlpI GCTNAGC 1 cut(s) 462
BlsI GCNGC 6 cut(s) 79, 82, 91, 697, 712, 1272
BmcAI AGTACT 1 cut(s) 1001
Bme18I GGWCC 1 cut(s) 1177
BmgT120I GGNCC 1 cut(s) 1177
BmiI GGNNCC 2 cut(s) 88, 1248
BmrI ACTGGG 1 cut(s) 518
BmsI GCATC 1 cut(s) 973
BmuI ACTGGG 1 cut(s) 518
BpiI GAAGAC 2 cut(s) 553, 622
Bpu10I CCTNAGC 1 cut(s) 469
Bpu1102I GCTNAGC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 613
BpuEI CTTGAG 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 21
BsaJI CCNNGG 5 cut(s) 102, 478, 734, 752, 978
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 530
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 524, 828, 1210
Bse3DI GCAATG 2 cut(s) 1127, 1152
BseDI CCNNGG 5 cut(s) 102, 478, 734, 752, 978
BseGI GGATG 4 cut(s) 108, 455, 988, 1206
BseLI CCNNNNNNNGG 2 cut(s) 12, 530
BseMI GCAATG 2 cut(s) 1127, 1152
BseMII CTCAG 3 cut(s) 476, 483, 1209
BseNI ACTGG 3 cut(s) 524, 828, 1210
BseRI GAGGAG 1 cut(s) 9
BseX3I CGGCCG 1 cut(s) 936
BseXI GCAGC 4 cut(s) 67, 707, 722, 1282
BseYI CCCAGC 1 cut(s) 112
Bsh1285I CGRYCG 1 cut(s) 939
BshFI GGCC 4 cut(s) 107, 162, 827, 938
BshNI GGYRCC 2 cut(s) 86, 1246
BsiEI CGRYCG 1 cut(s) 939
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 2 cut(s) 12, 815
BslI CCNNNNNNNGG 2 cut(s) 12, 530
BsmAI GTCTC 4 cut(s) 21, 50, 58, 901
BsmFI GGGAC 2 cut(s) 12, 815
BsnI GGCC 4 cut(s) 107, 162, 827, 938
Bso31I GGTCTC 1 cut(s) 21
Bsp119I TTCGAA 1 cut(s) 613
Bsp1286I GDGCHC 1 cut(s) 273
Bsp1407I TGTACA 1 cut(s) 818
Bsp143I GATC 2 cut(s) 234, 1086
Bsp1720I GCTNAGC 1 cut(s) 462
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 3 cut(s) 75, 78, 90
BspANI GGCC 4 cut(s) 107, 162, 827, 938
BspCNI CTCAG 3 cut(s) 475, 482, 1210
BspLI GGNNCC 2 cut(s) 88, 1248
BspPI GGATC 1 cut(s) 1081
BspT104I TTCGAA 1 cut(s) 613
BspT107I GGYRCC 2 cut(s) 86, 1246
BspTNI GGTCTC 1 cut(s) 21
BsrDI GCAATG 2 cut(s) 1127, 1152
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 818
BsrI ACTGG 3 cut(s) 524, 828, 1210
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 5 cut(s) 102, 478, 734, 752, 978
BssMI GATC 2 cut(s) 234, 1086
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 4 cut(s) 102, 478, 734, 978
Bst4CI ACNGT 2 cut(s) 818, 1246
Bst6I CTCTTC 2 cut(s) 152, 337
BstACI GRCGYC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 925
BstAUI TGTACA 1 cut(s) 818
BstBI TTCGAA 1 cut(s) 613
BstC8I GCNNGC 3 cut(s) 85, 310, 681
BstDEI CTNAG 3 cut(s) 462, 469, 1218
BstDSI CCRYGG 2 cut(s) 102, 752
BstF5I GGATG 4 cut(s) 108, 455, 988, 1206
BstH2I RGCGCY 2 cut(s) 90, 469
BstHHI GCGC 4 cut(s) 89, 468, 488, 792
BstKTI GATC 2 cut(s) 237, 1089
BstMAI GTCTC 4 cut(s) 21, 50, 58, 901
BstMBI GATC 2 cut(s) 234, 1086
BstMCI CGRYCG 1 cut(s) 939
BstNSI RCATGY 2 cut(s) 312, 404
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 4 cut(s) 67, 707, 722, 1282
BstV2I GAAGAC 2 cut(s) 553, 622
BstZI CGGCCG 1 cut(s) 936
BsuRI GGCC 4 cut(s) 107, 162, 827, 938
BtgI CCRYGG 2 cut(s) 102, 752
BtsCI GGATG 4 cut(s) 108, 455, 988, 1206
BtsIMutI CAGTG 2 cut(s) 821, 1027
Cac8I GCNNGC 3 cut(s) 85, 310, 681
CfoI GCGC 4 cut(s) 89, 468, 488, 792
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 1177
Csp6I GTAC 3 cut(s) 819, 1000, 1247
CspCI CAANNNNNGTGG 2 cut(s) 837, 872
CviAII CATG 7 cut(s) 103, 178, 309, 401, 634, 1143, 1195
CviQI GTAC 3 cut(s) 819, 1000, 1247
DdeI CTNAG 3 cut(s) 462, 469, 1218
DinI GGCGCC 1 cut(s) 88
DpnI GATC 2 cut(s) 236, 1088
DpnII GATC 2 cut(s) 234, 1086
EaeI YGGCCR 3 cut(s) 105, 825, 936
EagI CGGCCG 1 cut(s) 936
Eam1104I CTCTTC 2 cut(s) 152, 337
EarI CTCTTC 2 cut(s) 152, 337
Ecl136II GAGCTC 1 cut(s) 271
EclXI CGGCCG 1 cut(s) 936
Eco130I CCWWGG 4 cut(s) 102, 478, 734, 978
Eco24I GRGCYC 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 1177
Eco47III AGCGCT 1 cut(s) 467
Eco52I CGGCCG 1 cut(s) 936
Eco53kI GAGCTC 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 271
EcoT14I CCWWGG 4 cut(s) 102, 478, 734, 978
EcoT38I GRGCYC 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 88
EheI GGCGCC 1 cut(s) 88
ErhI CCWWGG 4 cut(s) 102, 478, 734, 978
FaeI CATG 7 cut(s) 106, 181, 312, 404, 637, 1146, 1198
FalI AAGNNNNNCTT 6 cut(s) 296, 328, 372, 404, 971, 1003
FaqI GGGAC 2 cut(s) 12, 815
FatI CATG 7 cut(s) 102, 177, 308, 400, 633, 1142, 1194
FauNDI CATATG 2 cut(s) 275, 786
Fnu4HI GCNGC 6 cut(s) 78, 81, 90, 696, 711, 1271
FokI GGATG 4 cut(s) 95, 462, 995, 1193
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 6 cut(s) 78, 81, 90, 696, 711, 1271
FspBI CTAG 6 cut(s) 245, 491, 620, 717, 735, 1136
GlaI GCGC 4 cut(s) 88, 467, 487, 791
GluI GCNGC 6 cut(s) 78, 81, 90, 696, 711, 1271
GsaI CCCAGC 1 cut(s) 116
HaeII RGCGCY 2 cut(s) 90, 469
HaeIII GGCC 4 cut(s) 107, 162, 827, 938
HapII CCGG 1 cut(s) 84
HhaI GCGC 4 cut(s) 89, 468, 488, 792
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 7 cut(s) 106, 181, 312, 404, 637, 1146, 1198
Hin6I GCGC 4 cut(s) 87, 466, 486, 790
HinP1I GCGC 4 cut(s) 87, 466, 486, 790
HinfI GANTC 4 cut(s) 37, 300, 1220, 1275
HpaII CCGG 1 cut(s) 84
Hpy166II GTNNAC 1 cut(s) 821
Hpy188I TCNGA 6 cut(s) 449, 553, 872, 1219, 1225, 1284
Hpy188III TCNNGA 3 cut(s) 701, 717, 904
Hpy8I GTNNAC 1 cut(s) 821
HpyAV CCTTC 3 cut(s) 656, 754, 1142
HpyCH4III ACNGT 2 cut(s) 818, 1246
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 8 cut(s) 181, 404, 568, 710, 919, 1120, 1157, 1198
HpyF3I CTNAG 3 cut(s) 462, 469, 1218
HpySE526I ACGT 1 cut(s) 741
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 7 cut(s) 106, 181, 312, 404, 637, 1146, 1198
HspAI GCGC 4 cut(s) 87, 466, 486, 790
KasI GGCGCC 1 cut(s) 86
KpnI GGTACC 1 cut(s) 1250
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 2 cut(s) 234, 1086
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 4 cut(s) 67, 707, 722, 1282
LweI GCATC 1 cut(s) 973
MaeI CTAG 6 cut(s) 245, 491, 620, 717, 735, 1136
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 3 cut(s) 428, 973, 1022
MalI GATC 2 cut(s) 236, 1088
MboI GATC 2 cut(s) 234, 1086
MboII GAAGA 6 cut(s) 139, 354, 553, 585, 627, 873
MhlI GDGCHC 1 cut(s) 273
MlsI TGGCCA 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 107
Mly113I GGCGCC 1 cut(s) 87
MlyI GAGTC 2 cut(s) 1229, 1269
MmeI TCCRAC 2 cut(s) 246, 427
Mox20I TGGCCA 1 cut(s) 107
MroNI GCCGGC 1 cut(s) 83
MscI TGGCCA 1 cut(s) 107
MseI TTAA 7 cut(s) 171, 321, 327, 354, 689, 890, 1064
MslI CAYNNNNRTG 1 cut(s) 426
Msp20I TGGCCA 1 cut(s) 107
MspA1I CMGCKG 2 cut(s) 80, 116
MspI CCGG 1 cut(s) 84
NaeI GCCGGC 1 cut(s) 85
NarI GGCGCC 1 cut(s) 87
NcoI CCATGG 1 cut(s) 102
NdeI CATATG 2 cut(s) 275, 786
NdeII GATC 2 cut(s) 234, 1086
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 7 cut(s) 106, 181, 312, 404, 637, 1146, 1198
NlaIV GGNNCC 2 cut(s) 88, 1248
NmuCI GTSAC 2 cut(s) 428, 1022
NspI RCATGY 2 cut(s) 312, 404
NspV TTCGAA 1 cut(s) 613
OliI CACNNNNGTG 1 cut(s) 426
PaeI GCATGC 1 cut(s) 312
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 2 cut(s) 37, 300
PkrI GCNGC 6 cut(s) 79, 82, 91, 697, 712, 1272
PleI GAGTC 2 cut(s) 1228, 1269
PluTI GGCGCC 1 cut(s) 90
PpsI GAGTC 2 cut(s) 1228, 1269
Psp124BI GAGCTC 1 cut(s) 273
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 88, 1248
PspPI GGNCC 1 cut(s) 1177
PsrI GAACNNNNNNTAC 2 cut(s) 658, 690
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 3 cut(s) 820, 1001, 1248
RsaNI GTAC 3 cut(s) 819, 1000, 1247
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 7 cut(s) 171, 321, 327, 354, 689, 890, 1064
SatI GCNGC 6 cut(s) 78, 81, 90, 696, 711, 1271
Sau3AI GATC 2 cut(s) 234, 1086
Sau96I GGNCC 1 cut(s) 1177
ScaI AGTACT 1 cut(s) 1001
SchI GAGTC 2 cut(s) 1229, 1269
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 1 cut(s) 973
SfcI CTRYAG 1 cut(s) 117
SfoI GGCGCC 1 cut(s) 88
SfuI TTCGAA 1 cut(s) 613
SinI GGWCC 1 cut(s) 1177
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 699
SmoI CTYRAG 1 cut(s) 699
SpeI ACTAGT 1 cut(s) 244
SphI GCATGC 1 cut(s) 312
SsiI CCGC 3 cut(s) 75, 78, 90
SspDI GGCGCC 1 cut(s) 86
SspI AATATT 1 cut(s) 867
SspMI CTAG 6 cut(s) 245, 491, 620, 717, 735, 1136
SstI GAGCTC 1 cut(s) 273
StyI CCWWGG 4 cut(s) 102, 478, 734, 978
TaaI ACNGT 2 cut(s) 818, 1246
TaiI ACGT 1 cut(s) 744
TaqI TCGA 3 cut(s) 340, 613, 1085
TatI WGTACW 2 cut(s) 818, 999
TauI GCSGC 2 cut(s) 80, 92
TfiI GAWTC 2 cut(s) 37, 300
Tru1I TTAA 7 cut(s) 171, 321, 327, 354, 689, 890, 1064
Tru9I TTAA 7 cut(s) 171, 321, 327, 354, 689, 890, 1064
TscAI CASTG 2 cut(s) 828, 1027
TseFI GTSAC 2 cut(s) 428, 1022
TseI GCWGC 4 cut(s) 80, 695, 710, 1270
Tsp45I GTSAC 2 cut(s) 428, 1022
TspDTI ATGAA 5 cut(s) 139, 603, 762, 787, 1005
TspGWI ACGGA 1 cut(s) 769
TspRI CASTG 2 cut(s) 828, 1027
VpaK11BI GGWCC 1 cut(s) 1177
XapI RAATTY 4 cut(s) 59, 1104, 1112, 1200
XbaI TCTAGA 1 cut(s) 716
XceI RCATGY 2 cut(s) 312, 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 531
XmaJI CCTAGG 1 cut(s) 734
XspI CTAG 6 cut(s) 245, 491, 620, 717, 735, 1136
ZrmI AGTACT 1 cut(s) 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.