Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012741

Physical Location & Seq

Genomic Coordinates Forward (+)

37553551 .. 37558571

Gene Structure 5021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19617

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCGATCCCAGCTGTAGTGGCTATTGTTCCGGTGGGCATATTGTTCATTCTCTCAGGCCTCATTGTTAATCTCATGCAGGCAGTTCTTTTCATCCTTATTCATCCTATATCAAAGAAATTGTACAGAAAGATCAACAAAGTAGTTGCAGAATTGCTGTGGTTGGAACTAATATGGCTAATTGATTGGTGGGCGGGCATCAAGGAATTTTCAGGCAAAGAACATGCACTTCTCATTTGTAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTCATGGCTCAGCGCTCGGGTTGCCTTGGTAGCGCACTGGCCATCATGAAGAAAGAAGCAATGTTCCTCCCAGTCATAGGTTGGTCAATGTGGTTTTGTGAATATGTTTTCTTGGAAAGAAGTTGGTCTAAAGATGAAAGCACGTTGAAGTCAGGTTTTCGACGGCTAGAGGATTTCCCTATGCCATTTTGGTTGGCTCTCTTTGTAGAAGGAACACGGTTTACACAGTCAAAGCTAATGGCAGCTCAAGAGTATGCTGCTTCAAGAGGATTGCCTATTCCTAGGAATGTCTTGCTTCCACGTACGAAGGGGTTTGTTTCATCAGTAAGTCATATGCGCTCATTTGTTCCAGCAATTTATGATTGTACATTGGCTATCCCCAACAATCAGCCACCACCTACACTATTGAGAATGTTTAGAGGTCAATCTTCTGTGATAAAATTACAAATCAGGAGACATCCAATGCAAGACTTACCAGAAACAGGCGACGGAATTGGACAGTGGTGTAAAGATGTATTTGTTACCAAGGATGCCTTATTGGAGAAGTATTATACTAAAGCCACATTCAGTGAACTGCAACTTCAAAACATTGGCAGACCTATAAAGTCCTTGCTTGTTGTCATAATTTGGTCTTGCCTCCTCGGCTATGGAATTTTCAAGTTCATTCAGTGGTCTTCCCTACTATCCACATGGGAAGGCATTGCATTTTCAGTGACTTTCTTGGTCCTTGTTGTAATTCTTATGCAAATCCTCATCCAGTCATCTGACTCGGAGCGTTCTACACCTCTCAAGGTGCCCCCAAAAGACTCGGTGACGGAGCAACTCATTCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0008374 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

370

Amino Acids

42.12

Weight (kDa)

9.24

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	72 - 204	4.8e-15	Acyltransferase
Acyltransf_C	PF16076	229 - 302	2.3e-23	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51260
malus_domestica	MD00G1164400.v1.1 MD03G1176900.v1.1
prunus_persica	Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1
pyrus_communis	pycom03g13410 pycom11g17030
rosa_chinensis	RchiOBHm_Chr7g0219171
rosa_laevigata	RLG00000002305
rosa_roxburghii	Rroxscaffold_3G00240180
rosa_rugosa	Rorug07G0182800
rosa_samantha	Rh7AG326500 Rh7BG316300 Rh7CG343800 Rh7DG321800
rosa_wichuraiana	Rw7G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1069
AciI	CCGC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	2 cut(s)	206, 927
AfaI	GTAC	3 cut(s)	125, 580, 643
AfeI	AGCGCT	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	353, 758
AgsI	TTSAA	5 cut(s)	424, 540, 860, 934, 1106
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	3 cut(s)	14, 511, 521
AluI	AGCT	3 cut(s)	14, 511, 521
Alw26I	GTCTC	1 cut(s)	724
Ama87I	CYCGRG	1 cut(s)	292
Aor51HI	AGCGCT	1 cut(s)	290
AoxI	GGCC	2 cut(s)	58, 315
ApeKI	GCWGC	2 cut(s)	518, 533
ApoI	RAATTY	2 cut(s)	206, 927
AspA2I	CCTAGG	1 cut(s)	557
AspLEI	GCGC	3 cut(s)	291, 311, 615
AspS9I	GGNCC	1 cut(s)	1000
AsuHPI	GGTGA	1 cut(s)	1099
AvaI	CYCGRG	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	1000
AvrII	CCTAGG	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	1074
BalI	TGGCCA	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	1069
BbsI	GAAGAC	1 cut(s)	942
BbvI	GCAGC	2 cut(s)	520, 530
BccI	CCATC	2 cut(s)	267, 326
BceAI	ACGGC	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	724
BfaI	CTAG	2 cut(s)	443, 558
BfmI	CTRYAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	292
BglI	GCCNNNNNGGC	1 cut(s)	918
BisI	GCNGC	2 cut(s)	519, 534
BlnI	CCTAGG	1 cut(s)	557
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	2 cut(s)	520, 535
Bme18I	GGWCC	1 cut(s)	1000
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	1000
BmiI	GGNNCC	1 cut(s)	1071
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	2 cut(s)	207, 796
BmuI	ACTGGG	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	942
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	2 cut(s)	507, 1049
BsaAI	YACGTR	1 cut(s)	578
BsaJI	CCNNGG	4 cut(s)	301, 557, 801, 916
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 758
Bse1I	ACTGG	3 cut(s)	318, 347, 1033
Bse3DI	GCAATG	2 cut(s)	342, 975
BseDI	CCNNGG	4 cut(s)	301, 557, 801, 916
BseGI	GGATG	6 cut(s)	93, 103, 278, 733, 811, 1029
BseLI	CCNNNNNNNGG	2 cut(s)	353, 758
BseMI	GCAATG	2 cut(s)	342, 975
BseMII	CTCAG	2 cut(s)	69, 299
BseNI	ACTGG	3 cut(s)	318, 347, 1033
BseRI	GAGGAG	1 cut(s)	905
BseSI	GKGCMC	1 cut(s)	1074
BseXI	GCAGC	2 cut(s)	520, 530
BseYI	CCCAGC	1 cut(s)	10
BshFI	GGCC	2 cut(s)	60, 317
BshNI	GGYRCC	1 cut(s)	1069
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	32
BsiWI	CGTACG	1 cut(s)	578
BslI	CCNNNNNNNGG	2 cut(s)	353, 758
BsmAI	GTCTC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	60, 317
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	1074
Bsp1407I	TGTACA	2 cut(s)	123, 641
Bsp143I	GATC	2 cut(s)	6, 132
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	2 cut(s)	60, 317
BspCNI	CTCAG	2 cut(s)	68, 298
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	1071
BspT107I	GGYRCC	1 cut(s)	1069
BsrDI	GCAATG	2 cut(s)	342, 975
BsrGI	TGTACA	2 cut(s)	123, 641
BsrI	ACTGG	3 cut(s)	318, 347, 1033
BssECI	CCNNGG	4 cut(s)	301, 557, 801, 916
BssMI	GATC	2 cut(s)	6, 132
BssT1I	CCWWGG	3 cut(s)	301, 557, 801
Bst4CI	ACNGT	3 cut(s)	495, 504, 777
BstAUI	TGTACA	2 cut(s)	123, 641
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	81, 196
BstDEI	CTNAG	2 cut(s)	55, 285
BstF5I	GGATG	6 cut(s)	93, 103, 278, 733, 811, 1029
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	3 cut(s)	291, 311, 615
BstKTI	GATC	2 cut(s)	9, 135
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	2 cut(s)	6, 132
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 297, 306, 918
BstNSI	RCATGY	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	1074
BstV1I	GCAGC	2 cut(s)	520, 530
BstV2I	GAAGAC	1 cut(s)	942
BsuRI	GGCC	2 cut(s)	60, 317
BtsCI	GGATG	6 cut(s)	93, 103, 278, 733, 811, 1029
BtsIMutI	CAGTG	5 cut(s)	311, 782, 850, 950, 993
Cac8I	GCNNGC	2 cut(s)	81, 196
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	3 cut(s)	291, 311, 615
Cfr13I	GGNCC	1 cut(s)	1000
Csp6I	GTAC	3 cut(s)	124, 579, 642
CviAII	CATG	5 cut(s)	76, 224, 280, 322, 966
CviQI	GTAC	3 cut(s)	124, 579, 642
DdeI	CTNAG	2 cut(s)	55, 285
DpnI	GATC	2 cut(s)	8, 134
DpnII	GATC	2 cut(s)	6, 132
EaeI	YGGCCR	1 cut(s)	315
Eco130I	CCWWGG	3 cut(s)	301, 557, 801
Eco147I	AGGCCT	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	1000
Eco47III	AGCGCT	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	292
EcoT14I	CCWWGG	3 cut(s)	301, 557, 801
ErhI	CCWWGG	3 cut(s)	301, 557, 801
FaeI	CATG	5 cut(s)	79, 227, 283, 325, 969
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FatI	CATG	5 cut(s)	75, 223, 279, 321, 965
FauI	CCCGC	1 cut(s)	187
FauNDI	CATATG	1 cut(s)	609
Fnu4HI	GCNGC	2 cut(s)	519, 534
FokI	GGATG	6 cut(s)	80, 90, 285, 720, 818, 1016
Fsp4HI	GCNGC	2 cut(s)	519, 534
FspBI	CTAG	2 cut(s)	443, 558
GlaI	GCGC	3 cut(s)	290, 310, 614
GluI	GCNGC	2 cut(s)	519, 534
GsaI	CCCAGC	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	2 cut(s)	60, 317
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	3 cut(s)	291, 311, 615
Hin1II	CATG	5 cut(s)	79, 227, 283, 325, 969
Hin6I	GCGC	3 cut(s)	289, 309, 613
HinP1I	GCGC	3 cut(s)	289, 309, 613
HinfI	GANTC	2 cut(s)	1043, 1082
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	1099
Hpy166II	GTNNAC	2 cut(s)	498, 848
Hpy188I	TCNGA	2 cut(s)	1042, 1048
Hpy188III	TCNNGA	4 cut(s)	322, 524, 540, 727
Hpy8I	GTNNAC	2 cut(s)	498, 848
Hpy99I	CGWCG	2 cut(s)	441, 767
HpyAV	CCTTC	3 cut(s)	479, 577, 965
HpyCH4III	ACNGT	3 cut(s)	495, 504, 777
HpyCH4IV	ACGT	2 cut(s)	419, 577
HpyCH4V	TGCA	7 cut(s)	79, 149, 227, 742, 853, 980, 1021
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 297, 306, 918
HpyF3I	CTNAG	2 cut(s)	55, 285
HpySE526I	ACGT	2 cut(s)	419, 577
Hsp92II	CATG	5 cut(s)	79, 227, 283, 325, 969
HspAI	GCGC	3 cut(s)	289, 309, 613
Kzo9I	GATC	2 cut(s)	6, 132
LmnI	GCTCC	2 cut(s)	1048, 1093
Lsp1109I	GCAGC	2 cut(s)	520, 530
LweI	GCATC	2 cut(s)	207, 796
MaeI	CTAG	2 cut(s)	443, 558
MaeII	ACGT	2 cut(s)	419, 577
MaeIII	GTNAC	4 cut(s)	251, 796, 988, 1087
MalI	GATC	2 cut(s)	8, 134
MboI	GATC	2 cut(s)	6, 132
MboII	GAAGA	3 cut(s)	337, 696, 942
MhlI	GDGCHC	1 cut(s)	1074
MlsI	TGGCCA	1 cut(s)	317
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	2 cut(s)	1037, 1076
MmeI	TCCRAC	2 cut(s)	144, 250
MnlI	CCTC	9 cut(s)	71, 353, 439, 536, 689, 923, 926, 1037, 1071
Mox20I	TGGCCA	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 297, 306, 918
NdeI	CATATG	1 cut(s)	609
NdeII	GATC	2 cut(s)	6, 132
NlaIII	CATG	5 cut(s)	79, 227, 283, 325, 969
NlaIV	GGNNCC	1 cut(s)	1071
NmeAIII	GCCGAG	1 cut(s)	897
NmuCI	GTSAC	3 cut(s)	251, 988, 1087
NspI	RCATGY	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	249
PagI	TCATGA	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	60
Pfl23II	CGTACG	1 cut(s)	578
PkrI	GCNGC	2 cut(s)	520, 535
PleI	GAGTC	2 cut(s)	1037, 1076
PpsI	GAGTC	2 cut(s)	1037, 1076
Ppu21I	YACGTR	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	10
PspLI	CGTACG	1 cut(s)	578
PspN4I	GGNNCC	1 cut(s)	1071
PspPI	GGNCC	1 cut(s)	1000
PsrI	GAACNNNNNNTAC	2 cut(s)	481, 513
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	3 cut(s)	125, 580, 643
RsaNI	GTAC	3 cut(s)	124, 579, 642
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	519, 534
Sau3AI	GATC	2 cut(s)	6, 132
Sau96I	GGNCC	1 cut(s)	1000
SchI	GAGTC	2 cut(s)	1037, 1076
SduI	GDGCHC	1 cut(s)	1074
SfaNI	GCATC	2 cut(s)	207, 796
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	1000
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	522, 1064
SmoI	CTYRAG	2 cut(s)	522, 1064
SseBI	AGGCCT	1 cut(s)	60
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	2 cut(s)	443, 558
StuI	AGGCCT	1 cut(s)	60
StyI	CCWWGG	3 cut(s)	301, 557, 801
TaaI	ACNGT	3 cut(s)	495, 504, 777
TaiI	ACGT	2 cut(s)	422, 580
TaqI	TCGA	1 cut(s)	436
TatI	WGTACW	2 cut(s)	123, 641
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	5 cut(s)	318, 782, 850, 950, 993
TseFI	GTSAC	3 cut(s)	251, 988, 1087
TseI	GCWGC	2 cut(s)	518, 533
Tsp45I	GTSAC	3 cut(s)	251, 988, 1087
TspDTI	ATGAA	7 cut(s)	37, 82, 92, 338, 426, 585, 928
TspGWI	ACGGA	2 cut(s)	780, 1106
TspRI	CASTG	5 cut(s)	318, 782, 850, 950, 993
VpaK11BI	GGWCC	1 cut(s)	1000
XapI	RAATTY	2 cut(s)	206, 927
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	354
XmaJI	CCTAGG	1 cut(s)	557
XspI	CTAG	2 cut(s)	443, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.