Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012741

Physical Location & Seq

Genomic Coordinates Forward (+)

38478046 .. 38483246

Gene Structure 5201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG321800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAAGCCAAAACAAACGCAGCCCCAAACAAGGAAACAAACAAACAAACGCAGAGAGAGAAGCCGAGGCATGGCGATCCCAGCTGTAGTGGCTATTGTTCCGGTGGGCATATTGTTCATTCTCTCAGGCCTCATTGTTAATCTCATGCAGGCAGTTCTTTTCATCCTTATTCGTCCTATATCAAAGAAATTGTACAGAAAGATCAACAAAGTAGTTGCAGAATTGCTGTGGTTGGAACTCATATGGCTAATTGATTGGTGGGCGGGCATCAAGGTTGAGTTGTATGTAGACTCAGAAACTTTTAAATTAATGGGCAAAGAACATGCACTTCTCATTTGTAATCACAGAAGTGACATTGATTGGCTTGTTGGATGGGTCATGGCTCAGCGCTCGGGTTGCCTTGGTAGCGCACTGGCCATCATGAAGAAAGAAGCAATGTTCCTCCCAGTCATAGGTTGGTCAATGTGGTTTTGTGAATATGTTTTCTTGGAAAGAAGTTGGTCTAAAGATGAAAGCACGTTGAAGTCAGGTTTTCGACGGCTAGAGGATTTCCCTATGCCATTTTGGTTGGCACTCTTTGTAGAAGGAACACGGTTTACACAGTCAAAGCTAATGGCAGCTCAAGAGTATGCTGCTTCAAGAGGATTGCCTATTCCTAGGAATGTCTTGCTTCCACGTACGAAGGGGTTTGTTTCATCAGTAAGTCATATGCGCTCATTTGTTCCAGCAATTTATGATTGTACATTGGCTATCCCCAACAATCAGCCACCACCTACACTATTGAGAATGTTTAGAGGTCAATCTTCTGTGATAAAATTACAAATCAGGAGACATCCAATGCAAGACTTACCAGAAACAGGCGACGGAATTGGACAGTGGTGTAAAGATGTATTTGTTACCAAGGATGCCTTATTGGAGAAGTATTATACTAAAGCCACATTCAGTGAACTGCAACTTCAAAACATTGGCAGACCTATAAAGTCCTTGCTTGTTGTCATAATTTGGTCTTGCCTCCTCGGCTATGGAATTTTCAAGTTCATTCAGTGGTCTTCCCTACTATCCACATGGGAAGGCATTGCATTTTCAGTGACTTTCTTGGTCCTTGTTGTAATTCTTATGCAAATCCTCATCCAGTCATCTGACTCGGAGCGTTCTACACCTCTCAAGGTGCCCCCAAAAGACTCGGTGACGGAGCAACTCATTCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0008374 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

403

Amino Acids

46.16

Weight (kDa)

9.68

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	106 - 237	6.8e-15	Acyltransferase
Acyltransf_C	PF16076	262 - 335	2.7e-23	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51260
malus_domestica	MD00G1164400.v1.1 MD03G1176900.v1.1
prunus_persica	Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1 Prupe.4G245900_v2.0.a1
pyrus_communis	pycom03g13410 pycom11g17030
rosa_chinensis	RchiOBHm_Chr7g0219171
rosa_laevigata	RLG00000002305
rosa_roxburghii	Rroxscaffold_3G00240180
rosa_rugosa	Rorug07G0182800
rosa_samantha	Rh7AG326500 Rh7BG316300 Rh7CG343800 Rh7DG321800
rosa_wichuraiana	Rw7G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1168
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	1026
AfaI	GTAC	3 cut(s)	194, 679, 742
AfeI	AGCGCT	1 cut(s)	389
AfiI	CCNNNNNNNGG	4 cut(s)	30, 70, 452, 857
AgsI	TTSAA	5 cut(s)	523, 639, 959, 1033, 1205
AleI	CACNNNNGTG	1 cut(s)	348
AluBI	AGCT	3 cut(s)	83, 610, 620
AluI	AGCT	3 cut(s)	83, 610, 620
Alw26I	GTCTC	1 cut(s)	823
AlwI	GGATC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	391
Aor51HI	AGCGCT	1 cut(s)	389
AoxI	GGCC	2 cut(s)	127, 414
ApeKI	GCWGC	3 cut(s)	19, 617, 632
ApoI	RAATTY	1 cut(s)	1026
AseI	ATTAAT	1 cut(s)	308
AspA2I	CCTAGG	1 cut(s)	656
AspLEI	GCGC	3 cut(s)	390, 410, 714
AspS9I	GGNCC	1 cut(s)	1099
AsuHPI	GGTGA	1 cut(s)	1198
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	1099
AvrII	CCTAGG	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	1173
BalI	TGGCCA	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	1168
BbsI	GAAGAC	1 cut(s)	1041
BbvI	GCAGC	3 cut(s)	31, 619, 629
BccI	CCATC	2 cut(s)	366, 425
BceAI	ACGGC	1 cut(s)	554
BcoDI	GTCTC	1 cut(s)	823
BfaI	CTAG	2 cut(s)	542, 657
BfmI	CTRYAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	391
BglI	GCCNNNNNGGC	1 cut(s)	1017
BisI	GCNGC	3 cut(s)	20, 618, 633
BlnI	CCTAGG	1 cut(s)	656
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	3 cut(s)	21, 619, 634
Bme18I	GGWCC	1 cut(s)	1099
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	1099
BmiI	GGNNCC	1 cut(s)	1170
BmrI	ACTGGG	1 cut(s)	440
BmsI	GCATC	2 cut(s)	276, 895
BmuI	ACTGGG	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	1041
Bpu1102I	GCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	2 cut(s)	606, 1148
BsaAI	YACGTR	1 cut(s)	677
BsaJI	CCNNGG	5 cut(s)	64, 400, 656, 900, 1015
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 70, 452, 857
Bse1I	ACTGG	3 cut(s)	417, 446, 1132
Bse3DI	GCAATG	2 cut(s)	441, 1074
BseDI	CCNNGG	5 cut(s)	64, 400, 656, 900, 1015
BseGI	GGATG	5 cut(s)	162, 377, 832, 910, 1128
BseLI	CCNNNNNNNGG	4 cut(s)	30, 70, 452, 857
BseMI	GCAATG	2 cut(s)	441, 1074
BseMII	CTCAG	3 cut(s)	138, 306, 398
BseNI	ACTGG	3 cut(s)	417, 446, 1132
BseRI	GAGGAG	1 cut(s)	1004
BseSI	GKGCMC	1 cut(s)	1173
BseXI	GCAGC	3 cut(s)	31, 619, 629
BseYI	CCCAGC	1 cut(s)	79
BshFI	GGCC	2 cut(s)	129, 416
BshNI	GGYRCC	1 cut(s)	1168
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	101
BsiWI	CGTACG	1 cut(s)	677
BslI	CCNNNNNNNGG	4 cut(s)	30, 70, 452, 857
BsmAI	GTCTC	1 cut(s)	823
BsnI	GGCC	2 cut(s)	129, 416
BsoBI	CYCGRG	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	1173
Bsp1407I	TGTACA	2 cut(s)	192, 740
Bsp143I	GATC	2 cut(s)	75, 201
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	2 cut(s)	129, 416
BspCNI	CTCAG	3 cut(s)	137, 305, 397
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	1170
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	1168
BsrDI	GCAATG	2 cut(s)	441, 1074
BsrGI	TGTACA	2 cut(s)	192, 740
BsrI	ACTGG	3 cut(s)	417, 446, 1132
BssECI	CCNNGG	5 cut(s)	64, 400, 656, 900, 1015
BssMI	GATC	2 cut(s)	75, 201
BssT1I	CCWWGG	3 cut(s)	400, 656, 900
Bst4CI	ACNGT	3 cut(s)	594, 603, 876
BstAUI	TGTACA	2 cut(s)	192, 740
BstBAI	YACGTR	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	150, 265
BstDEI	CTNAG	3 cut(s)	124, 292, 384
BstF5I	GGATG	5 cut(s)	162, 377, 832, 910, 1128
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	3 cut(s)	390, 410, 714
BstKTI	GATC	2 cut(s)	78, 204
BstMAI	GTCTC	1 cut(s)	823
BstMBI	GATC	2 cut(s)	75, 201
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 89, 396, 405, 1017
BstNSI	RCATGY	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	1173
BstV1I	GCAGC	3 cut(s)	31, 619, 629
BstV2I	GAAGAC	1 cut(s)	1041
BsuRI	GGCC	2 cut(s)	129, 416
BtsCI	GGATG	5 cut(s)	162, 377, 832, 910, 1128
BtsIMutI	CAGTG	5 cut(s)	410, 881, 949, 1049, 1092
Cac8I	GCNNGC	2 cut(s)	150, 265
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	3 cut(s)	390, 410, 714
Cfr13I	GGNCC	1 cut(s)	1099
Csp6I	GTAC	3 cut(s)	193, 678, 741
CviAII	CATG	6 cut(s)	70, 145, 323, 379, 421, 1065
CviQI	GTAC	3 cut(s)	193, 678, 741
DdeI	CTNAG	3 cut(s)	124, 292, 384
DpnI	GATC	2 cut(s)	77, 203
DpnII	GATC	2 cut(s)	75, 201
DraI	TTTAAA	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	414
Eco130I	CCWWGG	3 cut(s)	400, 656, 900
Eco147I	AGGCCT	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	1099
Eco47III	AGCGCT	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	391
EcoT14I	CCWWGG	3 cut(s)	400, 656, 900
ErhI	CCWWGG	3 cut(s)	400, 656, 900
FaeI	CATG	6 cut(s)	73, 148, 326, 382, 424, 1068
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FatI	CATG	6 cut(s)	69, 144, 322, 378, 420, 1064
FauI	CCCGC	1 cut(s)	256
FauNDI	CATATG	2 cut(s)	242, 708
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	3 cut(s)	20, 618, 633
FokI	GGATG	5 cut(s)	149, 384, 819, 917, 1115
Fsp4HI	GCNGC	3 cut(s)	20, 618, 633
FspBI	CTAG	2 cut(s)	542, 657
GlaI	GCGC	3 cut(s)	389, 409, 713
GluI	GCNGC	3 cut(s)	20, 618, 633
GsaI	CCCAGC	1 cut(s)	83
HaeII	RGCGCY	1 cut(s)	391
HaeIII	GGCC	2 cut(s)	129, 416
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	3 cut(s)	390, 410, 714
Hin1II	CATG	6 cut(s)	73, 148, 326, 382, 424, 1068
Hin6I	GCGC	3 cut(s)	388, 408, 712
HinP1I	GCGC	3 cut(s)	388, 408, 712
HinfI	GANTC	3 cut(s)	290, 1142, 1181
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	1198
Hpy166II	GTNNAC	3 cut(s)	289, 597, 947
Hpy188I	TCNGA	3 cut(s)	295, 1141, 1147
Hpy188III	TCNNGA	4 cut(s)	421, 623, 639, 826
Hpy8I	GTNNAC	3 cut(s)	289, 597, 947
Hpy99I	CGWCG	2 cut(s)	540, 866
HpyAV	CCTTC	3 cut(s)	578, 676, 1064
HpyCH4III	ACNGT	3 cut(s)	594, 603, 876
HpyCH4IV	ACGT	2 cut(s)	518, 676
HpyCH4V	TGCA	7 cut(s)	148, 218, 326, 841, 952, 1079, 1120
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 89, 396, 405, 1017
HpyF3I	CTNAG	3 cut(s)	124, 292, 384
HpySE526I	ACGT	2 cut(s)	518, 676
Hsp92II	CATG	6 cut(s)	73, 148, 326, 382, 424, 1068
HspAI	GCGC	3 cut(s)	388, 408, 712
Kzo9I	GATC	2 cut(s)	75, 201
LmnI	GCTCC	2 cut(s)	1147, 1192
Lsp1109I	GCAGC	3 cut(s)	31, 619, 629
LweI	GCATC	2 cut(s)	276, 895
MaeI	CTAG	2 cut(s)	542, 657
MaeII	ACGT	2 cut(s)	518, 676
MaeIII	GTNAC	4 cut(s)	350, 895, 1087, 1186
MalI	GATC	2 cut(s)	77, 203
MboI	GATC	2 cut(s)	75, 201
MboII	GAAGA	3 cut(s)	436, 795, 1041
MhlI	GDGCHC	1 cut(s)	1173
MlsI	TGGCCA	1 cut(s)	416
MluNI	TGGCCA	1 cut(s)	416
MlyI	GAGTC	3 cut(s)	284, 1136, 1175
MmeI	TCCRAC	2 cut(s)	213, 349
Mox20I	TGGCCA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	3 cut(s)	138, 303, 308
MslI	CAYNNNNRTG	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	5 cut(s)	80, 89, 396, 405, 1017
NdeI	CATATG	2 cut(s)	242, 708
NdeII	GATC	2 cut(s)	75, 201
NlaIII	CATG	6 cut(s)	73, 148, 326, 382, 424, 1068
NlaIV	GGNNCC	1 cut(s)	1170
NmeAIII	GCCGAG	2 cut(s)	89, 996
NmuCI	GTSAC	3 cut(s)	350, 1087, 1186
NspI	RCATGY	1 cut(s)	326
OliI	CACNNNNGTG	1 cut(s)	348
PagI	TCATGA	1 cut(s)	420
PceI	AGGCCT	1 cut(s)	129
Pfl23II	CGTACG	1 cut(s)	677
PkrI	GCNGC	3 cut(s)	21, 619, 634
PleI	GAGTC	3 cut(s)	284, 1136, 1175
PpsI	GAGTC	3 cut(s)	284, 1136, 1175
Ppu21I	YACGTR	1 cut(s)	677
PshBI	ATTAAT	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	79
PspLI	CGTACG	1 cut(s)	677
PspN4I	GGNNCC	1 cut(s)	1170
PspPI	GGNCC	1 cut(s)	1099
PsrI	GAACNNNNNNTAC	2 cut(s)	580, 612
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	3 cut(s)	194, 679, 742
RsaNI	GTAC	3 cut(s)	193, 678, 741
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	138, 303, 308
SatI	GCNGC	3 cut(s)	20, 618, 633
Sau3AI	GATC	2 cut(s)	75, 201
Sau96I	GGNCC	1 cut(s)	1099
SchI	GAGTC	3 cut(s)	284, 1136, 1175
SduI	GDGCHC	1 cut(s)	1173
SfaNI	GCATC	2 cut(s)	276, 895
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	1099
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	621, 1163
SmoI	CTYRAG	2 cut(s)	621, 1163
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	542, 657
StuI	AGGCCT	1 cut(s)	129
StyI	CCWWGG	3 cut(s)	400, 656, 900
TaaI	ACNGT	3 cut(s)	594, 603, 876
TaiI	ACGT	2 cut(s)	521, 679
TaqI	TCGA	1 cut(s)	535
TatI	WGTACW	2 cut(s)	192, 740
Tru1I	TTAA	3 cut(s)	138, 303, 308
Tru9I	TTAA	3 cut(s)	138, 303, 308
TscAI	CASTG	5 cut(s)	417, 881, 949, 1049, 1092
TseFI	GTSAC	3 cut(s)	350, 1087, 1186
TseI	GCWGC	3 cut(s)	19, 617, 632
Tsp45I	GTSAC	3 cut(s)	350, 1087, 1186
TspDTI	ATGAA	7 cut(s)	17, 106, 151, 437, 525, 684, 1027
TspGWI	ACGGA	2 cut(s)	879, 1205
TspRI	CASTG	5 cut(s)	417, 881, 949, 1049, 1092
VpaK11BI	GGWCC	1 cut(s)	1099
VspI	ATTAAT	1 cut(s)	308
XapI	RAATTY	1 cut(s)	1026
XceI	RCATGY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	453
XmaJI	CCTAGG	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	2 cut(s)	542, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.