Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011429

Physical Location & Seq

Genomic Coordinates Reverse (-)

19102791 .. 19104933

Gene Structure 2143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGAACATAGAATCAGAAGCAGTCGATTTCGAGCCAGAGGAGGATGACCTTATGGACGAAGAAGGTACAGCTATTGACGGAGCTGATGTTTCTCCACGCGCGGGACATCCGAGGCTTAAGTCGGCTATTGCCGGAGCTAATGGCGAATCAGCAAAGAAGACCAAAGGCCGTGGGTTTCGCGAGGAGAAAGATTCCGATCGTCAGCGTCGTCTTTCCTCACGCGATTTCGAATCACTTGGTTCAGATGGCCGTCCTGGTCCGCAGAGATCCGTTGAAGGATGGATTATCTTGGTCTCTGGAGTTCATGAGGAGACACAGGAGGAGGATATAACCAATGCTTTTGGTGATTTTGGGGAGATTAAGAATCTAAATCTCAATCTCGATCGCCGTAGTGGTTATGTCAAGGGATATGCTTTGATAGAATATGAGAAGAAGGAAGAAGCACAGAGCGCTATTTCAGCAATGAATGGTGCTGAGCTTCTAACACAGAATGTTAGCGTTGACTGGGCCTTCAGCAGCGGTCCCAGTGGTGGTGAATCTTACAGGAGAAAGAACTCGAGGTATGGGAGGTCGCAACGTTCAAGAAGTCCGAGAAGACGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000381 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035145 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0048024 GO:0048518 GO:0048519 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

202

Amino Acids

22.44

Weight (kDa)

5.21

Isoelectric Point (pI)

65.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_3	PF08777	94 - 188	9.2e-06	RNA binding motif
RRM_1	PF00076	97 - 163	2.9e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51510
fragaria_vesca	FvH4_3g28440
malus_domestica	MD03G1171900.v1.1 MD11G1189700.v1.1 MD12G1080200.v1.1
prunus_persica	Prupe.4G255000_v2.0.a1 Prupe.7G055300_v2.0.a1
pyrus_communis	pycom03g12900 pycom11g16600 pycom12g06680
rosa_chinensis	RchiOBHm_Chr5g0053031
rosa_laevigata	RLG00000034777
rosa_multiflora	Rmu_sc0006573.1_g000011
rosa_roxburghii	Rroxscaffold_1G00028840
rosa_rugosa	Rorug05G0268700
rosa_samantha	Rh5AG340900 Rh5BG351500 Rh5CG377700 Rh5DG367900
rosa_wichuraiana	Rw5G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	102, 104, 183, 225
AciI	CCGC	3 cut(s)	104, 263, 522
AclI	AACGTT	1 cut(s)	580
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	499
AfaI	GTAC	1 cut(s)	70
AfeI	AGCGCT	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	104, 533
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	278, 585
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	74, 86, 140, 481
AluI	AGCT	4 cut(s)	74, 86, 140, 481
Alw26I	GTCTC	2 cut(s)	301, 308
AlwI	GGATC	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	559
Aor51HI	AGCGCT	1 cut(s)	454
AoxI	GGCC	3 cut(s)	169, 250, 510
ApeKI	GCWGC	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	104, 455
AspS9I	GGNCC	3 cut(s)	260, 510, 524
AsuHPI	GGTGA	2 cut(s)	359, 548
AsuII	TTCGAA	1 cut(s)	231
AvaI	CYCGRG	1 cut(s)	559
AvaII	GGWCC	2 cut(s)	260, 524
BbsI	GAAGAC	2 cut(s)	167, 604
BbvI	GCAGC	1 cut(s)	531
BccI	CCATC	2 cut(s)	242, 276
BceAI	ACGGC	3 cut(s)	156, 237, 375
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	301, 308
BfoI	RGCGCY	1 cut(s)	456
BfrI	CTTAAG	1 cut(s)	119
BisI	GCNGC	1 cut(s)	520
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	521
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	2 cut(s)	260, 524
BmeT110I	CYCGRG	1 cut(s)	559
BmgT120I	GGNCC	3 cut(s)	260, 510, 524
BmiI	GGNNCC	1 cut(s)	526
BmrFI	CCNGG	1 cut(s)	258
BmrI	ACTGGG	2 cut(s)	517, 522
BmuI	ACTGGG	2 cut(s)	517, 522
BpiI	GAAGAC	2 cut(s)	167, 604
BpmI	CTGGAG	1 cut(s)	321
Bpu1102I	GCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	113, 172
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 533
Bse1I	ACTGG	2 cut(s)	512, 528
Bse3DI	GCAATG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	113, 172
BseGI	GGATG	3 cut(s)	52, 109, 287
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	104, 533
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	512, 528
BseRI	GAGGAG	4 cut(s)	56, 200, 326, 338
BseXI	GCAGC	1 cut(s)	531
Bsh1236I	CGCG	4 cut(s)	102, 104, 183, 225
Bsh1285I	CGRYCG	2 cut(s)	202, 388
BshFI	GGCC	3 cut(s)	171, 252, 512
BsiEI	CGRYCG	2 cut(s)	202, 388
BsiHKCI	CYCGRG	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	120, 510
BslI	CCNNNNNNNGG	2 cut(s)	104, 533
BsmAI	GTCTC	2 cut(s)	301, 308
BsmFI	GGGAC	2 cut(s)	120, 510
BsnI	GGCC	3 cut(s)	171, 252, 512
Bso31I	GGTCTC	1 cut(s)	301
BsoBI	CYCGRG	1 cut(s)	559
Bsp119I	TTCGAA	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	199, 269, 385
Bsp1720I	GCTNAGC	1 cut(s)	477
Bsp68I	TCGCGA	1 cut(s)	183
BspACI	CCGC	3 cut(s)	104, 263, 522
BspANI	GGCC	3 cut(s)	171, 252, 512
BspCNI	CTCAG	1 cut(s)	469
BspFNI	CGCG	4 cut(s)	102, 104, 183, 225
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	264
BspT104I	TTCGAA	1 cut(s)	231
BspTI	CTTAAG	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	512, 528
BssECI	CCNNGG	2 cut(s)	113, 172
BssMI	GATC	3 cut(s)	199, 269, 385
Bst2UI	CCWGG	1 cut(s)	258
BstAFI	CTTAAG	1 cut(s)	119
BstBI	TTCGAA	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	3 cut(s)	52, 109, 287
BstFNI	CGCG	4 cut(s)	102, 104, 183, 225
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	2 cut(s)	104, 455
BstKTI	GATC	3 cut(s)	202, 272, 388
BstMAI	GTCTC	2 cut(s)	301, 308
BstMBI	GATC	3 cut(s)	199, 269, 385
BstMCI	CGRYCG	2 cut(s)	202, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 461
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstUI	CGCG	4 cut(s)	102, 104, 183, 225
BstV1I	GCAGC	1 cut(s)	531
BstV2I	GAAGAC	2 cut(s)	167, 604
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	3 cut(s)	171, 252, 512
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	3 cut(s)	52, 109, 287
BtsIMutI	CAGTG	1 cut(s)	535
BtuMI	TCGCGA	1 cut(s)	183
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	2 cut(s)	104, 455
Cfr13I	GGNCC	3 cut(s)	260, 510, 524
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	69
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	1 cut(s)	308
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	3 cut(s)	201, 271, 387
DpnII	GATC	3 cut(s)	199, 269, 385
EaeI	YGGCCR	1 cut(s)	250
Eco31I	GGTCTC	1 cut(s)	301
Eco47I	GGWCC	2 cut(s)	260, 524
Eco47III	AGCGCT	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	499
Eco88I	CYCGRG	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	311
FaiI	YATR	8 cut(s)	11, 56, 309, 332, 402, 414, 429, 567
FaqI	GGGAC	2 cut(s)	120, 510
FatI	CATG	1 cut(s)	307
FauI	CCCGC	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	520
FokI	GGATG	3 cut(s)	59, 96, 294
Fsp4HI	GCNGC	1 cut(s)	520
GlaI	GCGC	2 cut(s)	103, 454
GluI	GCNGC	1 cut(s)	520
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	171, 252, 512
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	2 cut(s)	104, 455
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	2 cut(s)	102, 453
HinP1I	GCGC	2 cut(s)	102, 453
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	6 cut(s)	14, 149, 194, 233, 367, 539
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	359, 548
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	5 cut(s)	19, 114, 199, 247, 594
Hpy188III	TCNNGA	5 cut(s)	182, 300, 308, 383, 585
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	4 cut(s)	59, 272, 430, 523
HpyCH4IV	ACGT	2 cut(s)	580, 601
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 461
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	2 cut(s)	580, 601
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	2 cut(s)	102, 453
Kzo9I	GATC	3 cut(s)	199, 269, 385
LmnI	GCTCC	2 cut(s)	83, 137
LpnPI	CCDG	9 cut(s)	51, 148, 243, 270, 285, 305, 493, 532, 541
Lsp1109I	GCAGC	1 cut(s)	531
MaeII	ACGT	2 cut(s)	580, 601
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	3 cut(s)	201, 271, 387
MboI	GATC	3 cut(s)	199, 269, 385
MboII	GAAGA	5 cut(s)	74, 172, 445, 452, 609
MflI	RGATCY	1 cut(s)	269
MseI	TTAA	2 cut(s)	120, 363
MspA1I	CMGCKG	1 cut(s)	522
MspCI	CTTAAG	1 cut(s)	119
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
MvnI	CGCG	4 cut(s)	102, 104, 183, 225
MwoI	GCNNNNNNNGC	2 cut(s)	452, 461
NdeII	GATC	3 cut(s)	199, 269, 385
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	1 cut(s)	526
NruI	TCGCGA	1 cut(s)	183
NspV	TTCGAA	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	559
PagI	TCATGA	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PfeI	GAWTC	6 cut(s)	14, 149, 194, 233, 367, 539
PkrI	GCNGC	1 cut(s)	521
Ple19I	CGATCG	2 cut(s)	202, 388
Psp1406I	AACGTT	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	526
PspPI	GGNCC	3 cut(s)	260, 510, 524
PspXI	VCTCGAGB	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	269
PvuI	CGATCG	2 cut(s)	202, 388
RruI	TCGCGA	1 cut(s)	183
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	120, 363
SatI	GCNGC	1 cut(s)	520
Sau3AI	GATC	3 cut(s)	199, 269, 385
Sau96I	GGNCC	3 cut(s)	260, 510, 524
ScrFI	CCNGG	1 cut(s)	258
Sfr274I	CTCGAG	1 cut(s)	559
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	2 cut(s)	260, 524
SlaI	CTCGAG	1 cut(s)	559
SmlI	CTYRAG	2 cut(s)	119, 559
SmoI	CTYRAG	2 cut(s)	119, 559
SsiI	CCGC	3 cut(s)	104, 263, 522
StyD4I	CCNGG	1 cut(s)	256
TaiI	ACGT	2 cut(s)	583, 604
TaqI	TCGA	5 cut(s)	27, 33, 231, 384, 560
TfiI	GAWTC	6 cut(s)	14, 149, 194, 233, 367, 539
Tru1I	TTAA	2 cut(s)	120, 363
Tru9I	TTAA	2 cut(s)	120, 363
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	1 cut(s)	519
TspDTI	ATGAA	2 cut(s)	296, 482
TspGWI	ACGGA	2 cut(s)	96, 262
TspRI	CASTG	1 cut(s)	535
Vha464I	CTTAAG	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	260, 524
XhoI	CTCGAG	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.