Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0011429

Physical Location & Seq

Genomic Coordinates Reverse (-)

49204010 .. 49208079

Gene Structure 4070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG377700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGAACAACGCAGACGTGGAAGCCGTGGACTTTGAGCCCGAGGACGATGACCTCATGGACGAGGACGGTGCCATCGACGCCGAGCCCTCAGCCTCCCCCCGGGCCCCACTCCCCAAGCTCAAGTCTGCTATCACCGGCGCCTCCTCCGCCTCTCTCTCAGCTCCTAAGAAGACCAAAGGTCGAGGCTTTCGCGAAGATCCCAATGCCGAACGCAACACCCGCCTCGCTGTCTCTGACTTGGACGGACTCAACGCCCTAGACGGCCTCGAGCCCCAGCGATCGATCGAGGGATGGATTATTCTGGTTACCGGAATCCATGAAGAGGCACAAGAAGATGATCTGCATGCTACATTTGGTGAATTTGGGGAGATAAAGAATTTGCATTTAAATCTTGATCGCCGTACTGGGTTTGTCAAGGGTTATGCGCTTATTGAGTATGAGAATTTTGCGGAGGCGCAAACTGCAATATCCAGAATGGACGGAAACAGTGTACTTACACAGATTGTTAATGTTGACTGGGCCTTCAGCAATGGATCCTTCCTTGATGGGTCAAAAAAGAAGAACCCAAGGTTTGTCTTACACGAAATCTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000381 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035145 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0048024 GO:0048518 GO:0048519 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

199

Amino Acids

21.79

Weight (kDa)

4.56

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	101 - 164	7.5e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51510
fragaria_vesca	FvH4_3g28440
malus_domestica	MD03G1171900.v1.1 MD11G1189700.v1.1 MD12G1080200.v1.1
prunus_persica	Prupe.4G255000_v2.0.a1 Prupe.7G055300_v2.0.a1
pyrus_communis	pycom03g12900 pycom11g16600 pycom12g06680
rosa_chinensis	RchiOBHm_Chr5g0053031
rosa_laevigata	RLG00000034777
rosa_multiflora	Rmu_sc0006573.1_g000011
rosa_roxburghii	Rroxscaffold_1G00028840
rosa_rugosa	Rorug05G0268700
rosa_samantha	Rh5AG340900 Rh5BG351500 Rh5CG377700 Rh5DG367900
rosa_wichuraiana	Rw5G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	71, 140
AccII	CGCG	1 cut(s)	195
AciI	CCGC	3 cut(s)	150, 223, 452
AclWI	GGATC	3 cut(s)	194, 531, 544
AcsI	RAATTY	3 cut(s)	362, 379, 445
AcuI	CTGAAG	1 cut(s)	511
AcyI	GRCGYC	2 cut(s)	81, 141
AfaI	GTAC	2 cut(s)	406, 495
AfiI	CCNNNNNNNGG	2 cut(s)	102, 325
AhdI	GACNNNNNGTC	1 cut(s)	180
AjiI	CACGTC	1 cut(s)	19
AluBI	AGCT	2 cut(s)	121, 164
AluI	AGCT	2 cut(s)	121, 164
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	3 cut(s)	194, 531, 544
Ama87I	CYCGRG	3 cut(s)	41, 102, 269
AoxI	GGCC	3 cut(s)	105, 265, 522
ApaI	GGGCCC	1 cut(s)	109
ApoI	RAATTY	3 cut(s)	362, 379, 445
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	3 cut(s)	143, 430, 460
AspS9I	GGNCC	3 cut(s)	105, 106, 522
AsuC2I	CCSGG	2 cut(s)	103, 104
AsuHPI	GGTGA	2 cut(s)	127, 371
AvaI	CYCGRG	3 cut(s)	41, 102, 269
BaeGI	GKGCMC	1 cut(s)	109
BamHI	GGATCC	1 cut(s)	536
BanI	GGYRCC	2 cut(s)	71, 140
BanII	GRGCYC	4 cut(s)	42, 90, 109, 276
BbsI	GAAGAC	1 cut(s)	179
BbvCI	CCTCAGC	1 cut(s)	91
BccI	CCATC	3 cut(s)	83, 288, 542
BceAI	ACGGC	3 cut(s)	11, 280, 387
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BcnI	CCSGG	2 cut(s)	103, 104
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	144
Bme1390I	CCNGG	2 cut(s)	103, 104
BmeRI	GACNNNNNGTC	1 cut(s)	180
BmeT110I	CYCGRG	3 cut(s)	41, 102, 269
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	105, 106, 522
BmiI	GGNNCC	5 cut(s)	73, 107, 108, 142, 538
BmrFI	CCNGG	2 cut(s)	103, 104
BmrI	ACTGGG	2 cut(s)	417, 529
BmuI	ACTGGG	2 cut(s)	417, 529
BpiI	GAAGAC	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	103, 104
Bsa29I	ATCGAT	1 cut(s)	284
BsaHI	GRCGYC	2 cut(s)	81, 141
BsaJI	CCNNGG	5 cut(s)	27, 42, 101, 102, 569
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 325
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	412, 524
Bse3DI	GCAATG	1 cut(s)	538
BseCI	ATCGAT	1 cut(s)	284
BseDI	CCNNGG	5 cut(s)	27, 42, 101, 102, 569
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	102, 325
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	2 cut(s)	105, 174
BseNI	ACTGG	2 cut(s)	412, 524
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	2 cut(s)	284, 288
BshFI	GGCC	3 cut(s)	107, 267, 524
BshNI	GGYRCC	2 cut(s)	71, 140
BshVI	ATCGAT	1 cut(s)	284
BsiEI	CGRYCG	2 cut(s)	284, 288
BsiHKCI	CYCGRG	3 cut(s)	41, 102, 269
BsiSI	CCGG	3 cut(s)	103, 138, 312
BslI	CCNNNNNNNGG	2 cut(s)	102, 325
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	3 cut(s)	107, 267, 524
BsoBI	CYCGRG	3 cut(s)	41, 102, 269
Bsp120I	GGGCCC	1 cut(s)	105
Bsp1286I	GDGCHC	4 cut(s)	42, 90, 109, 276
Bsp143I	GATC	6 cut(s)	199, 281, 285, 340, 397, 536
Bsp68I	TCGCGA	1 cut(s)	195
BspACI	CCGC	3 cut(s)	150, 223, 452
BspANI	GGCC	3 cut(s)	107, 267, 524
BspCNI	CTCAG	2 cut(s)	104, 173
BspDI	ATCGAT	1 cut(s)	284
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	5 cut(s)	73, 107, 108, 142, 538
BspPI	GGATC	3 cut(s)	194, 531, 544
BspT107I	GGYRCC	2 cut(s)	71, 140
BsrDI	GCAATG	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	412, 524
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	5 cut(s)	27, 42, 101, 102, 569
BssMI	GATC	6 cut(s)	199, 281, 285, 340, 397, 536
BssNI	GRCGYC	2 cut(s)	81, 141
BssT1I	CCWWGG	1 cut(s)	569
Bst4CI	ACNGT	2 cut(s)	71, 491
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	2 cut(s)	81, 141
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	3 cut(s)	91, 160, 168
BstDSI	CCRYGG	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	3 cut(s)	143, 430, 460
BstKTI	GATC	6 cut(s)	202, 284, 288, 343, 400, 539
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	6 cut(s)	199, 281, 285, 340, 397, 536
BstMCI	CGRYCG	2 cut(s)	284, 288
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 80, 149, 222, 464
BstNSI	RCATGY	1 cut(s)	350
BstPI	GGTNACC	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	101, 102
BstSLI	GKGCMC	1 cut(s)	109
BstUI	CGCG	1 cut(s)	195
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	2 cut(s)	199, 536
BstYI	RGATCY	2 cut(s)	199, 536
Bsu15I	ATCGAT	1 cut(s)	284
BsuRI	GGCC	3 cut(s)	107, 267, 524
BsuTUI	ATCGAT	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	496
BtuMI	TCGCGA	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	3 cut(s)	143, 430, 460
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	105, 106, 522
Cfr9I	CCCGGG	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	284
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	405, 494
CviAII	CATG	3 cut(s)	58, 320, 347
CviQI	GTAC	2 cut(s)	405, 494
DdeI	CTNAG	3 cut(s)	91, 160, 168
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	6 cut(s)	201, 283, 287, 342, 399, 538
DpnII	GATC	6 cut(s)	199, 281, 285, 340, 397, 536
DraI	TTTAAA	1 cut(s)	390
DriI	GACNNNNNGTC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	318
Eam1105I	GACNNNNNGTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	318
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	569
Eco24I	GRGCYC	4 cut(s)	42, 90, 109, 276
Eco57I	CTGAAG	1 cut(s)	511
Eco88I	CYCGRG	3 cut(s)	41, 102, 269
Eco91I	GGTNACC	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	569
EcoT38I	GRGCYC	4 cut(s)	42, 90, 109, 276
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	3 cut(s)	61, 323, 350
FaiI	YATR	5 cut(s)	59, 321, 348, 426, 441
FatI	CATG	3 cut(s)	57, 319, 346
FauI	CCCGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	306
FriOI	GRGCYC	4 cut(s)	42, 90, 109, 276
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	3 cut(s)	142, 429, 459
GsaI	CCCAGC	1 cut(s)	280
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	107, 267, 524
HapII	CCGG	3 cut(s)	103, 138, 312
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	3 cut(s)	143, 430, 460
Hin1I	GRCGYC	2 cut(s)	81, 141
Hin1II	CATG	3 cut(s)	61, 323, 350
Hin6I	GCGC	3 cut(s)	141, 428, 458
HinP1I	GCGC	3 cut(s)	141, 428, 458
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	2 cut(s)	249, 315
HpaII	CCGG	3 cut(s)	103, 138, 312
HphI	GGTGA	2 cut(s)	127, 371
Hpy166II	GTNNAC	3 cut(s)	31, 494, 517
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	3 cut(s)	194, 395, 474
Hpy8I	GTNNAC	3 cut(s)	31, 494, 517
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	535, 550
HpyCH4III	ACNGT	2 cut(s)	71, 491
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	346, 385, 467
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 80, 149, 222, 464
HpyF3I	CTNAG	3 cut(s)	91, 160, 168
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	2 cut(s)	81, 141
Hsp92II	CATG	3 cut(s)	61, 323, 350
HspAI	GCGC	3 cut(s)	141, 428, 458
KasI	GGCGCC	1 cut(s)	140
Kzo9I	GATC	6 cut(s)	199, 281, 285, 340, 397, 536
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	8 cut(s)	116, 151, 290, 290, 325, 393, 487, 505
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	6 cut(s)	201, 283, 287, 342, 399, 538
MboI	GATC	6 cut(s)	199, 281, 285, 340, 397, 536
MboII	GAAGA	5 cut(s)	184, 209, 335, 347, 574
MflI	RGATCY	2 cut(s)	199, 536
MhlI	GDGCHC	4 cut(s)	42, 90, 109, 276
MluCI	AATT	3 cut(s)	362, 379, 445
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	243
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	2 cut(s)	389, 510
MspI	CCGG	3 cut(s)	103, 138, 312
MspR9I	CCNGG	2 cut(s)	103, 104
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	5 cut(s)	11, 80, 149, 222, 464
NarI	GGCGCC	1 cut(s)	141
NciI	CCSGG	2 cut(s)	103, 104
NdeII	GATC	6 cut(s)	199, 281, 285, 340, 397, 536
NlaIII	CATG	3 cut(s)	61, 323, 350
NlaIV	GGNNCC	5 cut(s)	73, 107, 108, 142, 538
NmeAIII	GCCGAG	1 cut(s)	109
NruI	TCGCGA	1 cut(s)	195
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PaeR7I	CTCGAG	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 75
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	315
Ple19I	CGATCG	2 cut(s)	284, 288
PleI	GAGTC	1 cut(s)	243
PluTI	GGCGCC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	243
PspEI	GGTNACC	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	276
PspN4I	GGNNCC	5 cut(s)	73, 107, 108, 142, 538
PspOMI	GGGCCC	1 cut(s)	105
PspPI	GGNCC	3 cut(s)	105, 106, 522
PspXI	VCTCGAGB	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	199, 536
PvuI	CGATCG	2 cut(s)	284, 288
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	2 cut(s)	406, 495
RsaNI	GTAC	2 cut(s)	405, 494
SaqAI	TTAA	2 cut(s)	389, 510
Sau3AI	GATC	6 cut(s)	199, 281, 285, 340, 397, 536
Sau96I	GGNCC	3 cut(s)	105, 106, 522
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	2 cut(s)	103, 104
SduI	GDGCHC	4 cut(s)	42, 90, 109, 276
SetI	ASST	6 cut(s)	21, 57, 123, 166, 184, 575
SfoI	GGCGCC	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	269
SgrAI	CRCCGGYG	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	269
SmaI	CCCGGG	1 cut(s)	104
SmiI	ATTTAAAT	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	122, 269
SmoI	CTYRAG	2 cut(s)	122, 269
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	3 cut(s)	362, 379, 445
SsiI	CCGC	3 cut(s)	150, 223, 452
SspDI	GGCGCC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	101, 102
StyI	CCWWGG	1 cut(s)	569
SwaI	ATTTAAAT	1 cut(s)	390
TaaI	ACNGT	2 cut(s)	71, 491
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	5 cut(s)	78, 184, 270, 284, 288
TasI	AATT	3 cut(s)	362, 379, 445
TatI	WGTACW	1 cut(s)	493
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	389, 510
Tru9I	TTAA	2 cut(s)	389, 510
TscAI	CASTG	1 cut(s)	496
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	2 cut(s)	261, 498
TspMI	CCCGGG	1 cut(s)	102
TspRI	CASTG	1 cut(s)	496
XapI	RAATTY	3 cut(s)	362, 379, 445
XceI	RCATGY	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	269
XmaI	CCCGGG	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.