Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011429

Physical Location & Seq

Genomic Coordinates Reverse (-)

54894498 .. 54898196

Gene Structure 3699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG367900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCGAACAACGCAGACGTGGAAGCCGTGGACTTTGAGCCCGAGGACGATGACCTCATGGACGAGGACGGTGCCGTCGACGCCGAGCCCGCAGCCTCCCCCCGGGCCCCACTCCCCAAGCTCAAGTCTGCTATCACCGGCGCCTCCTCCGCCTCTCTCTCAGCTCCTAAGAAGACCAAAGGTCGAGGCTTTCGCGAAGATCCCAATGCCGAACGCAACACCCGCCTGGCTGTCTCTGACTTGGACGGACTCAACGCCCTGGACGGCCTCGAGCCCCAGCGATCGATCGAGGGATGGATTATTCTGGTTACCGGAATCCATGAAGAGGCACAAGAAGATGATCTGCATGCTACATTTGGTGAATTTGGGGAGATAAAGAATTTGCATTTAAATCTTGATCGCCGTACTGGGTTTGTCAAGGTACTGACACAACTTGGATCATGTTTGATGATATGGAATTCAATTTACAGGTGTTCAATTTCAATACCCCTTTTCTTTTTAGCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000381 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035145 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0048024 GO:0048518 GO:0048519 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

169

Amino Acids

18.44

Weight (kDa)

4.54

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51510
fragaria_vesca	FvH4_3g28440
malus_domestica	MD03G1171900.v1.1 MD11G1189700.v1.1 MD12G1080200.v1.1
prunus_persica	Prupe.4G255000_v2.0.a1 Prupe.7G055300_v2.0.a1
pyrus_communis	pycom03g12900 pycom11g16600 pycom12g06680
rosa_chinensis	RchiOBHm_Chr5g0053031
rosa_laevigata	RLG00000034777
rosa_multiflora	Rmu_sc0006573.1_g000011
rosa_roxburghii	Rroxscaffold_1G00028840
rosa_rugosa	Rorug05G0268700
rosa_samantha	Rh5AG340900 Rh5BG351500 Rh5CG377700 Rh5DG367900
rosa_wichuraiana	Rw5G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccB1I	GGYRCC	2 cut(s)	71, 140
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	195
AciI	CCGC	3 cut(s)	90, 150, 223
AclWI	GGATC	2 cut(s)	194, 445
AcsI	RAATTY	3 cut(s)	362, 379, 457
AcyI	GRCGYC	2 cut(s)	81, 141
AfaI	GTAC	2 cut(s)	406, 423
AfiI	CCNNNNNNNGG	2 cut(s)	102, 325
AgsI	TTSAA	3 cut(s)	462, 477, 483
AhdI	GACNNNNNGTC	1 cut(s)	180
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	225, 258
AluBI	AGCT	3 cut(s)	121, 164, 503
AluI	AGCT	3 cut(s)	121, 164, 503
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	2 cut(s)	194, 445
Ama87I	CYCGRG	3 cut(s)	41, 102, 269
AoxI	GGCC	2 cut(s)	105, 265
ApaI	GGGCCC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	3 cut(s)	362, 379, 457
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	2 cut(s)	105, 106
AsuC2I	CCSGG	2 cut(s)	103, 104
AsuHPI	GGTGA	2 cut(s)	127, 371
AvaI	CYCGRG	3 cut(s)	41, 102, 269
BaeGI	GKGCMC	1 cut(s)	109
BanI	GGYRCC	2 cut(s)	71, 140
BanII	GRGCYC	4 cut(s)	42, 90, 109, 276
BbsI	GAAGAC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	288
BceAI	ACGGC	4 cut(s)	11, 59, 280, 387
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	2 cut(s)	227, 260
BcnI	CCSGG	2 cut(s)	103, 104
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	508
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	4 cut(s)	103, 104, 227, 260
BmeRI	GACNNNNNGTC	1 cut(s)	180
BmeT110I	CYCGRG	3 cut(s)	41, 102, 269
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	105, 106
BmiI	GGNNCC	4 cut(s)	73, 107, 108, 142
BmrFI	CCNGG	4 cut(s)	103, 104, 227, 260
BmrI	ACTGGG	1 cut(s)	417
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	103, 104
Bsa29I	ATCGAT	1 cut(s)	284
BsaHI	GRCGYC	2 cut(s)	81, 141
BsaJI	CCNNGG	5 cut(s)	27, 42, 101, 102, 258
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 325
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	227, 260
BseCI	ATCGAT	1 cut(s)	284
BseDI	CCNNGG	5 cut(s)	27, 42, 101, 102, 258
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	102, 325
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	2 cut(s)	284, 288
BshFI	GGCC	2 cut(s)	107, 267
BshNI	GGYRCC	2 cut(s)	71, 140
BshVI	ATCGAT	1 cut(s)	284
BsiEI	CGRYCG	2 cut(s)	284, 288
BsiHKCI	CYCGRG	3 cut(s)	41, 102, 269
BsiSI	CCGG	3 cut(s)	103, 138, 312
BslI	CCNNNNNNNGG	2 cut(s)	102, 325
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	107, 267
BsoBI	CYCGRG	3 cut(s)	41, 102, 269
Bsp120I	GGGCCC	1 cut(s)	105
Bsp1286I	GDGCHC	4 cut(s)	42, 90, 109, 276
Bsp143I	GATC	6 cut(s)	199, 281, 285, 340, 397, 437
Bsp68I	TCGCGA	1 cut(s)	195
BspACI	CCGC	3 cut(s)	90, 150, 223
BspANI	GGCC	2 cut(s)	107, 267
BspCNI	CTCAG	1 cut(s)	173
BspDI	ATCGAT	1 cut(s)	284
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	4 cut(s)	73, 107, 108, 142
BspPI	GGATC	2 cut(s)	194, 445
BspT107I	GGYRCC	2 cut(s)	71, 140
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	5 cut(s)	27, 42, 101, 102, 258
BssMI	GATC	6 cut(s)	199, 281, 285, 340, 397, 437
BssNI	GRCGYC	2 cut(s)	81, 141
Bst2UI	CCWGG	2 cut(s)	227, 260
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	2 cut(s)	81, 141
BstC8I	GCNNGC	2 cut(s)	90, 348
BstDEI	CTNAG	2 cut(s)	160, 168
BstDSI	CCRYGG	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	6 cut(s)	202, 284, 288, 343, 400, 440
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	6 cut(s)	199, 281, 285, 340, 397, 437
BstMCI	CGRYCG	2 cut(s)	284, 288
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 80, 89, 149, 222
BstNI	CCWGG	2 cut(s)	227, 260
BstNSI	RCATGY	1 cut(s)	350
BstPI	GGTNACC	1 cut(s)	307
BstSCI	CCNGG	4 cut(s)	101, 102, 225, 258
BstSLI	GKGCMC	1 cut(s)	109
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	107, 267
BsuTUI	ATCGAT	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	299
BtuMI	TCGCGA	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	90, 348
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	105, 106
Cfr9I	CCCGGG	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	284
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	405, 422
CviAII	CATG	4 cut(s)	58, 320, 347, 441
CviQI	GTAC	2 cut(s)	405, 422
DdeI	CTNAG	2 cut(s)	160, 168
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	6 cut(s)	201, 283, 287, 342, 399, 439
DpnII	GATC	6 cut(s)	199, 281, 285, 340, 397, 437
DraI	TTTAAA	1 cut(s)	390
DrdI	GACNNNNNNGTC	1 cut(s)	74
DriI	GACNNNNNGTC	1 cut(s)	180
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	318
Eam1105I	GACNNNNNGTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	318
EciI	GGCGGA	1 cut(s)	139
Eco24I	GRGCYC	4 cut(s)	42, 90, 109, 276
Eco88I	CYCGRG	3 cut(s)	41, 102, 269
Eco91I	GGTNACC	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	225, 258
EcoT38I	GRGCYC	4 cut(s)	42, 90, 109, 276
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
FaeI	CATG	4 cut(s)	61, 323, 350, 444
FaiI	YATR	5 cut(s)	59, 321, 348, 442, 454
FatI	CATG	4 cut(s)	57, 319, 346, 440
FauI	CCCGC	2 cut(s)	97, 230
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	306
FriOI	GRGCYC	4 cut(s)	42, 90, 109, 276
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	508
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	93
GsaI	CCCAGC	1 cut(s)	280
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	107, 267
HapII	CCGG	3 cut(s)	103, 138, 312
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	2 cut(s)	81, 141
Hin1II	CATG	4 cut(s)	61, 323, 350, 444
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	249, 315
HpaII	CCGG	3 cut(s)	103, 138, 312
HphI	GGTGA	2 cut(s)	127, 371
Hpy166II	GTNNAC	2 cut(s)	31, 79
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	2 cut(s)	194, 395
Hpy8I	GTNNAC	2 cut(s)	31, 79
Hpy99I	CGWCG	2 cut(s)	80, 83
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	346, 385
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 80, 89, 149, 222
HpyF3I	CTNAG	2 cut(s)	160, 168
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	2 cut(s)	81, 141
Hsp92II	CATG	4 cut(s)	61, 323, 350, 444
HspAI	GCGC	1 cut(s)	141
KasI	GGCGCC	1 cut(s)	140
Kzo9I	GATC	6 cut(s)	199, 281, 285, 340, 397, 437
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	508
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	6 cut(s)	201, 283, 287, 342, 399, 439
MboI	GATC	6 cut(s)	199, 281, 285, 340, 397, 437
MboII	GAAGA	4 cut(s)	184, 209, 335, 347
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	4 cut(s)	42, 90, 109, 276
MluCI	AATT	5 cut(s)	362, 379, 457, 462, 477
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	243
MseI	TTAA	1 cut(s)	389
MspI	CCGG	3 cut(s)	103, 138, 312
MspR9I	CCNGG	4 cut(s)	103, 104, 227, 260
MvaI	CCWGG	2 cut(s)	227, 260
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	5 cut(s)	11, 80, 89, 149, 222
NarI	GGCGCC	1 cut(s)	141
NciI	CCSGG	2 cut(s)	103, 104
NdeII	GATC	6 cut(s)	199, 281, 285, 340, 397, 437
NlaIII	CATG	4 cut(s)	61, 323, 350, 444
NlaIV	GGNNCC	4 cut(s)	73, 107, 108, 142
NmeAIII	GCCGAG	1 cut(s)	109
NruI	TCGCGA	1 cut(s)	195
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PaeR7I	CTCGAG	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 75
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	94
Ple19I	CGATCG	2 cut(s)	284, 288
PleI	GAGTC	1 cut(s)	243
PluTI	GGCGCC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	225, 258
PspEI	GGTNACC	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	276
PspGI	CCWGG	2 cut(s)	225, 258
PspN4I	GGNNCC	4 cut(s)	73, 107, 108, 142
PspOMI	GGGCCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	105, 106
PspXI	VCTCGAGB	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	199
PvuI	CGATCG	2 cut(s)	284, 288
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	2 cut(s)	406, 423
RsaNI	GTAC	2 cut(s)	405, 422
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	6 cut(s)	199, 281, 285, 340, 397, 437
Sau96I	GGNCC	2 cut(s)	105, 106
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	4 cut(s)	103, 104, 227, 260
SduI	GDGCHC	4 cut(s)	42, 90, 109, 276
SetI	ASST	8 cut(s)	21, 57, 123, 166, 184, 423, 473, 505
SfoI	GGCGCC	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	269
SgrAI	CRCCGGYG	1 cut(s)	137
SgrDI	CGTCGACG	1 cut(s)	77
SlaI	CTCGAG	1 cut(s)	269
SmaI	CCCGGG	1 cut(s)	104
SmiI	ATTTAAAT	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	122, 269
SmoI	CTYRAG	2 cut(s)	122, 269
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	5 cut(s)	362, 379, 457, 462, 477
SsiI	CCGC	3 cut(s)	90, 150, 223
SspDI	GGCGCC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	508
StyD4I	CCNGG	4 cut(s)	101, 102, 225, 258
SwaI	ATTTAAAT	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	5 cut(s)	78, 184, 270, 284, 288
TasI	AATT	5 cut(s)	362, 379, 457, 462, 477
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	1 cut(s)	261
TspMI	CCCGGG	1 cut(s)	102
XapI	RAATTY	3 cut(s)	362, 379, 457
XceI	RCATGY	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	269
XmaI	CCCGGG	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.