Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011429

Physical Location & Seq

Genomic Coordinates Reverse (-)

21410314 .. 21413887

Gene Structure 3574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCGAACAACGCAGACGTGGAAGCCGTCGACTTCGAGCCCGAGGACGATGACCTCATGGACGAGGACGGCGCCGTCGACGCCGAGCCCTCCGCCTCCCCCCGGGCCCCACCCCACAAGCTCAAGTCTGCAATCACCGGCTCCGCCTCTCTCTCCGCTCCCAAGAAGACTAAAGGTCGAGGGTTTCGAGAAGATCCCAATGCCGAGCGCAACACCCGCCTCGCTGTCTCTGACTTGGACGGCCTCCACGCCCTAGACGGCCTCGAGCCCCAGCGATCCGTCGAGGGATGGATTATTCTGGTTACTGGAATTCATGAGGAAGCACAAGAAGATGATCTTCATGCTACATTTGGTGAATTTGGGCAGATAAAGAATTTGCATTTAAATCTTGATCGCCGTACTGGATTTGTGAAGGGGTATGCGCTTATTGAATATGAGAATTTTGCGGAGGCGCAAGCTGCTATATCCAGCATGGATGGAAACAGTGTACTTACACAGATTGTTAATGTGGACTGGGCCTTCACCAATGGATCCTTCCTTGATGGGTCAAGAAAGAAGAACCCAAGACAACTACGAGATCGTCGCTCAAGGAGTCCTAGGAGGAGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000381 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035145 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0048024 GO:0048518 GO:0048519 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

204

Amino Acids

22.46

Weight (kDa)

5.09

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	99 - 162	1.8e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51510
fragaria_vesca	FvH4_3g28440
malus_domestica	MD03G1171900.v1.1 MD11G1189700.v1.1 MD12G1080200.v1.1
prunus_persica	Prupe.4G255000_v2.0.a1 Prupe.7G055300_v2.0.a1
pyrus_communis	pycom03g12900 pycom11g16600 pycom12g06680
rosa_chinensis	RchiOBHm_Chr5g0053031
rosa_laevigata	RLG00000034777
rosa_multiflora	Rmu_sc0006573.1_g000011
rosa_roxburghii	Rroxscaffold_1G00028840
rosa_rugosa	Rorug05G0268700
rosa_samantha	Rh5AG340900 Rh5BG351500 Rh5CG377700 Rh5DG367900
rosa_wichuraiana	Rw5G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	71
AccBSI	CCGCTC	1 cut(s)	158
AccI	GTMKAC	2 cut(s)	30, 78
AciI	CCGC	5 cut(s)	93, 144, 156, 217, 446
AclWI	GGATC	4 cut(s)	188, 270, 525, 538
AcsI	RAATTY	4 cut(s)	309, 356, 373, 439
AcyI	GRCGYC	2 cut(s)	72, 81
AfaI	GTAC	2 cut(s)	400, 489
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	431
AhdI	GACNNNNNGTC	1 cut(s)	174
AjiI	CACGTC	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	2 cut(s)	518, 550
AluBI	AGCT	2 cut(s)	121, 458
AluI	AGCT	2 cut(s)	121, 458
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	4 cut(s)	188, 270, 525, 538
Ama87I	CYCGRG	3 cut(s)	41, 102, 263
AoxI	GGCC	4 cut(s)	105, 241, 259, 516
ApaI	GGGCCC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	4 cut(s)	309, 356, 373, 439
AspA2I	CCTAGG	1 cut(s)	596
AspLEI	GCGC	4 cut(s)	74, 210, 424, 454
AspS9I	GGNCC	3 cut(s)	105, 106, 516
AsuC2I	CCSGG	2 cut(s)	103, 104
AsuHPI	GGTGA	3 cut(s)	127, 365, 514
AvaI	CYCGRG	3 cut(s)	41, 102, 263
AvrII	CCTAGG	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	109
BamHI	GGATCC	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	4 cut(s)	42, 90, 109, 270
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	3 cut(s)	282, 470, 536
BceAI	ACGGC	6 cut(s)	11, 59, 85, 256, 274, 381
BcnI	CCSGG	2 cut(s)	103, 104
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	254, 597
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	1 cut(s)	459
BlnI	CCTAGG	1 cut(s)	596
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	2 cut(s)	103, 104
BmeRI	GACNNNNNGTC	1 cut(s)	174
BmeT110I	CYCGRG	3 cut(s)	41, 102, 263
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	105, 106, 516
BmiI	GGNNCC	5 cut(s)	73, 107, 108, 142, 532
BmrFI	CCNGG	2 cut(s)	103, 104
BmrI	ACTGGG	1 cut(s)	523
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	107, 571
BpuMI	CCSGG	2 cut(s)	103, 104
BsaHI	GRCGYC	2 cut(s)	72, 81
BsaJI	CCNNGG	4 cut(s)	42, 101, 102, 596
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	3 cut(s)	310, 406, 518
BseDI	CCNNGG	4 cut(s)	42, 101, 102, 596
BseGI	GGATG	2 cut(s)	293, 481
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseNI	ACTGG	3 cut(s)	310, 406, 518
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	445
BseYI	CCCAGC	1 cut(s)	270
BshFI	GGCC	4 cut(s)	107, 243, 261, 518
BshNI	GGYRCC	1 cut(s)	71
BsiHKCI	CYCGRG	3 cut(s)	41, 102, 263
BsiSI	CCGG	2 cut(s)	103, 138
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	232
BsnI	GGCC	4 cut(s)	107, 243, 261, 518
BsoBI	CYCGRG	3 cut(s)	41, 102, 263
Bsp120I	GGGCCC	1 cut(s)	105
Bsp1286I	GDGCHC	4 cut(s)	42, 90, 109, 270
Bsp143I	GATC	6 cut(s)	193, 275, 334, 391, 530, 577
BspACI	CCGC	5 cut(s)	93, 144, 156, 217, 446
BspANI	GGCC	4 cut(s)	107, 243, 261, 518
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	5 cut(s)	73, 107, 108, 142, 532
BspPI	GGATC	4 cut(s)	188, 270, 525, 538
BspT107I	GGYRCC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	3 cut(s)	310, 406, 518
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	4 cut(s)	42, 101, 102, 596
BssMI	GATC	6 cut(s)	193, 275, 334, 391, 530, 577
BssNI	GRCGYC	2 cut(s)	72, 81
BssT1I	CCWWGG	1 cut(s)	596
Bst4CI	ACNGT	1 cut(s)	485
BstACI	GRCGYC	2 cut(s)	72, 81
BstC8I	GCNNGC	1 cut(s)	456
BstF5I	GGATG	2 cut(s)	293, 481
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	4 cut(s)	74, 210, 424, 454
BstKTI	GATC	6 cut(s)	196, 278, 337, 394, 533, 580
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	6 cut(s)	193, 275, 334, 391, 530, 577
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 80, 216, 458
BstSCI	CCNGG	2 cut(s)	101, 102
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	2 cut(s)	193, 530
BstYI	RGATCY	2 cut(s)	193, 530
BsuRI	GGCC	4 cut(s)	107, 243, 261, 518
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	293, 481
BtsIMutI	CAGTG	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	456
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	4 cut(s)	74, 210, 424, 454
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	105, 106, 516
Cfr9I	CCCGGG	1 cut(s)	102
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	399, 488
CviAII	CATG	4 cut(s)	58, 314, 341, 472
CviQI	GTAC	2 cut(s)	399, 488
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	6 cut(s)	195, 277, 336, 393, 532, 579
DpnII	GATC	6 cut(s)	193, 275, 334, 391, 530, 577
DraI	TTTAAA	1 cut(s)	384
DrdI	GACNNNNNNGTC	1 cut(s)	74
DriI	GACNNNNNGTC	1 cut(s)	174
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1105I	GACNNNNNGTC	1 cut(s)	174
EciI	GGCGGA	2 cut(s)	82, 133
Eco130I	CCWWGG	1 cut(s)	596
Eco24I	GRGCYC	4 cut(s)	42, 90, 109, 270
Eco88I	CYCGRG	3 cut(s)	41, 102, 263
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	596
EcoT38I	GRGCYC	4 cut(s)	42, 90, 109, 270
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	4 cut(s)	61, 317, 344, 475
FaiI	YATR	7 cut(s)	59, 315, 342, 420, 435, 464, 473
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	4 cut(s)	57, 313, 340, 471
FauI	CCCGC	1 cut(s)	224
FblI	GTMKAC	2 cut(s)	30, 78
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	2 cut(s)	300, 488
FriOI	GRGCYC	4 cut(s)	42, 90, 109, 270
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	2 cut(s)	254, 597
GlaI	GCGC	4 cut(s)	73, 209, 423, 453
GluI	GCNGC	1 cut(s)	459
GsaI	CCCAGC	1 cut(s)	274
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	107, 243, 261, 518
HapII	CCGG	2 cut(s)	103, 138
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	4 cut(s)	74, 210, 424, 454
Hin1I	GRCGYC	2 cut(s)	72, 81
Hin1II	CATG	4 cut(s)	61, 317, 344, 475
Hin6I	GCGC	4 cut(s)	72, 208, 422, 452
HinP1I	GCGC	4 cut(s)	72, 208, 422, 452
HincII	GTYRAC	2 cut(s)	31, 79
HindII	GTYRAC	2 cut(s)	31, 79
HinfI	GANTC	2 cut(s)	592, 606
HpaII	CCGG	2 cut(s)	103, 138
HphI	GGTGA	3 cut(s)	127, 365, 514
Hpy166II	GTNNAC	4 cut(s)	31, 79, 488, 511
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	4 cut(s)	188, 314, 389, 549
Hpy8I	GTNNAC	4 cut(s)	31, 79, 488, 511
Hpy99I	CGWCG	5 cut(s)	32, 80, 83, 284, 585
HpyAV	CCTTC	3 cut(s)	406, 529, 544
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	131, 379
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 80, 216, 458
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	2 cut(s)	72, 81
Hsp92II	CATG	4 cut(s)	61, 317, 344, 475
HspAI	GCGC	4 cut(s)	72, 208, 422, 452
KasI	GGCGCC	1 cut(s)	71
Kzo9I	GATC	6 cut(s)	193, 275, 334, 391, 530, 577
LmnI	GCTCC	2 cut(s)	146, 163
LpnPI	CCDG	8 cut(s)	116, 151, 284, 284, 291, 387, 481, 499
Lsp1109I	GCAGC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	254, 597
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	6 cut(s)	195, 277, 336, 393, 532, 579
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	6 cut(s)	193, 275, 334, 391, 530, 577
MboII	GAAGA	5 cut(s)	178, 203, 329, 341, 568
MflI	RGATCY	2 cut(s)	193, 530
MhlI	GDGCHC	4 cut(s)	42, 90, 109, 270
MluCI	AATT	4 cut(s)	309, 356, 373, 439
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	601
MseI	TTAA	2 cut(s)	383, 504
MspI	CCGG	2 cut(s)	103, 138
MspR9I	CCNGG	2 cut(s)	103, 104
MwoI	GCNNNNNNNGC	4 cut(s)	11, 80, 216, 458
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	2 cut(s)	103, 104
NdeII	GATC	6 cut(s)	193, 275, 334, 391, 530, 577
NlaIII	CATG	4 cut(s)	61, 317, 344, 475
NlaIV	GGNNCC	5 cut(s)	73, 107, 108, 142, 532
NmeAIII	GCCGAG	2 cut(s)	109, 229
PaeR7I	CTCGAG	1 cut(s)	263
PagI	TCATGA	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	3 cut(s)	24, 75, 184
PfeI	GAWTC	1 cut(s)	606
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	600
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	600
PspFI	CCCAGC	1 cut(s)	270
PspN4I	GGNNCC	5 cut(s)	73, 107, 108, 142, 532
PspOMI	GGGCCC	1 cut(s)	105
PspPI	GGNCC	3 cut(s)	105, 106, 516
PspXI	VCTCGAGB	1 cut(s)	263
PsuI	RGATCY	2 cut(s)	193, 530
RsaI	GTAC	2 cut(s)	400, 489
RsaNI	GTAC	2 cut(s)	399, 488
SalI	GTCGAC	2 cut(s)	29, 77
SaqAI	TTAA	2 cut(s)	383, 504
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	6 cut(s)	193, 275, 334, 391, 530, 577
Sau96I	GGNCC	3 cut(s)	105, 106, 516
SchI	GAGTC	1 cut(s)	601
ScrFI	CCNGG	2 cut(s)	103, 104
SduI	GDGCHC	4 cut(s)	42, 90, 109, 270
SetI	ASST	5 cut(s)	21, 57, 123, 178, 460
SfoI	GGCGCC	1 cut(s)	73
Sfr274I	CTCGAG	1 cut(s)	263
SgrDI	CGTCGACG	1 cut(s)	77
SlaI	CTCGAG	1 cut(s)	263
SmaI	CCCGGG	1 cut(s)	104
SmiI	ATTTAAAT	1 cut(s)	384
SmlI	CTYRAG	3 cut(s)	122, 263, 586
SmoI	CTYRAG	3 cut(s)	122, 263, 586
Sse9I	AATT	4 cut(s)	309, 356, 373, 439
SsiI	CCGC	5 cut(s)	93, 144, 156, 217, 446
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	2 cut(s)	254, 597
StyD4I	CCNGG	2 cut(s)	101, 102
StyI	CCWWGG	1 cut(s)	596
SwaI	ATTTAAAT	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	7 cut(s)	30, 36, 78, 178, 187, 264, 282
TasI	AATT	4 cut(s)	309, 356, 373, 439
TatI	WGTACW	1 cut(s)	487
TfiI	GAWTC	1 cut(s)	606
Tru1I	TTAA	2 cut(s)	383, 504
Tru9I	TTAA	2 cut(s)	383, 504
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	1 cut(s)	458
TspDTI	ATGAA	2 cut(s)	302, 329
TspGWI	ACGGA	1 cut(s)	268
TspMI	CCCGGG	1 cut(s)	102
TspRI	CASTG	1 cut(s)	490
XapI	RAATTY	4 cut(s)	309, 356, 373, 439
XhoI	CTCGAG	1 cut(s)	263
XmaI	CCCGGG	1 cut(s)	102
XmaJI	CCTAGG	1 cut(s)	596
XmiI	GTMKAC	2 cut(s)	30, 78
XspI	CTAG	2 cut(s)	254, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.