Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011429

Physical Location & Seq

Genomic Coordinates Reverse (-)

23380945 .. 23385209

Gene Structure 4265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1171900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGAGCGGAGATGTAGAAACGGTGGACTTCGAGCCCGAAGATGACGACCTCATGGACGAGGACGGAGCCGTCGACGCCGAGCCCTCCGCCTCCCCCAGGGCACCACTCCCCAAGCTCAAGTCCGCAATCACCGGCGTCGGAGCGGCGTCTGCCGCCCCTAAGAAGACCAAAGGTCGCGGATTCCGTGAAGATCTGAATGCCGACCGTAACAGCCGCCTCACTGCATCCCACTTCGACTCTCTCAACTCCTCCAACGGCCTCGAACCCCAACGATCCGTTGAGGGATGGATTATTCTGGTCACTGGGGTCCATGAAGAGGCCCAAGAGGACCACCTACAAGATGCATTTGGTGAATATGGGGAGATAAAAAATTTGCATTTAAATCTTGATCGCCGCACCGGGTTTGTGAAGGGGTATGCACTGATTGAATATGAGAGTTTTAAAGAGGCAAAAACTGCGATAGACAAAATGAACGGAGAACCGTTACTTACACAAGTTTTAACTGTTGATTGGGCCTTCAGCAATGGATCCTTCCTTGATGGATCCAGGAAGAACTCAAGACCGCTTAGAGAACGTCGCTCAAGGAGTCCTAGGAGGAGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000381 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035145 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0048024 GO:0048518 GO:0048519 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

203

Amino Acids

22.4

Weight (kDa)

5.23

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	99 - 165	4.3e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51510
fragaria_vesca	FvH4_3g28440
malus_domestica	MD03G1171900.v1.1 MD11G1189700.v1.1 MD12G1080200.v1.1
prunus_persica	Prupe.4G255000_v2.0.a1 Prupe.7G055300_v2.0.a1
pyrus_communis	pycom03g12900 pycom11g16600 pycom12g06680
rosa_chinensis	RchiOBHm_Chr5g0053031
rosa_laevigata	RLG00000034777
rosa_multiflora	Rmu_sc0006573.1_g000011
rosa_roxburghii	Rroxscaffold_1G00028840
rosa_rugosa	Rorug05G0268700
rosa_samantha	Rh5AG340900 Rh5BG351500 Rh5CG377700 Rh5DG367900
rosa_wichuraiana	Rw5G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	103
AccBSI	CCGCTC	2 cut(s)	9, 146
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	180
AciI	CCGC	9 cut(s)	9, 90, 126, 146, 156, 180, 217, 397, 566
AclWI	GGATC	5 cut(s)	270, 525, 538, 540, 553
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	505
AcyI	GRCGYC	3 cut(s)	78, 138, 149
AfiI	CCNNNNNNNGG	2 cut(s)	99, 319
AgsI	TTSAA	1 cut(s)	431
AhdI	GACNNNNNGTC	1 cut(s)	174
AjnI	CCWGG	2 cut(s)	98, 548
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
AlwI	GGATC	5 cut(s)	270, 525, 538, 540, 553
AoxI	GGCC	3 cut(s)	259, 321, 516
ApoI	RAATTY	1 cut(s)	373
AspA2I	CCTAGG	1 cut(s)	593
AspS9I	GGNCC	4 cut(s)	310, 322, 331, 516
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	2 cut(s)	124, 365
AvaII	GGWCC	2 cut(s)	310, 331
AvrII	CCTAGG	1 cut(s)	593
BaeGI	GKGCMC	1 cut(s)	106
BamHI	GGATCC	2 cut(s)	530, 545
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	2 cut(s)	39, 87
BbsI	GAAGAC	1 cut(s)	173
BccI	CCATC	2 cut(s)	282, 536
BceAI	ACGGC	2 cut(s)	56, 274
BciT130I	CCWGG	2 cut(s)	100, 550
BcnI	CCSGG	1 cut(s)	403
BfaI	CTAG	1 cut(s)	594
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	4 cut(s)	147, 156, 217, 397
BlnI	CCTAGG	1 cut(s)	593
BlsI	GCNGC	4 cut(s)	148, 157, 218, 398
Bme1390I	CCNGG	3 cut(s)	100, 403, 550
Bme18I	GGWCC	2 cut(s)	310, 331
BmeRI	GACNNNNNGTC	1 cut(s)	174
BmgT120I	GGNCC	4 cut(s)	310, 322, 331, 516
BmiI	GGNNCC	5 cut(s)	70, 105, 311, 532, 547
BmrFI	CCNGG	3 cut(s)	100, 403, 550
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	236, 334
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	173
BpuEI	CTTGAG	3 cut(s)	104, 544, 568
BpuMI	CCSGG	1 cut(s)	403
BsaHI	GRCGYC	3 cut(s)	78, 138, 149
BsaJI	CCNNGG	3 cut(s)	98, 99, 593
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 319
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	100, 550
BseDI	CCNNGG	3 cut(s)	98, 99, 593
BseGI	GGATG	2 cut(s)	227, 293
BseLI	CCNNNNNNNGG	2 cut(s)	99, 319
BseMI	GCAATG	1 cut(s)	532
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	3 cut(s)	261, 323, 518
BshNI	GGYRCC	1 cut(s)	103
BsiEI	CGRYCG	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	135, 402
BslI	CCNNNNNNNGG	2 cut(s)	99, 319
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	3 cut(s)	261, 323, 518
Bsp1286I	GDGCHC	3 cut(s)	39, 87, 106
Bsp143I	GATC	5 cut(s)	193, 275, 391, 530, 545
BspACI	CCGC	9 cut(s)	9, 90, 126, 146, 156, 180, 217, 397, 566
BspANI	GGCC	3 cut(s)	261, 323, 518
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	5 cut(s)	70, 105, 311, 532, 547
BspPI	GGATC	5 cut(s)	270, 525, 538, 540, 553
BspT107I	GGYRCC	1 cut(s)	103
BsrBI	CCGCTC	2 cut(s)	9, 146
BsrDI	GCAATG	1 cut(s)	532
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	98, 99, 593
BssMI	GATC	5 cut(s)	193, 275, 391, 530, 545
BssNI	GRCGYC	3 cut(s)	78, 138, 149
BssT1I	CCWWGG	1 cut(s)	593
Bst2UI	CCWGG	2 cut(s)	100, 550
Bst4CI	ACNGT	4 cut(s)	25, 209, 486, 508
Bst6I	CTCTTC	1 cut(s)	312
BstACI	GRCGYC	3 cut(s)	78, 138, 149
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	162, 569
BstENI	CCTNNNNNAGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	227, 293
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	5 cut(s)	196, 278, 394, 533, 548
BstMBI	GATC	5 cut(s)	193, 275, 391, 530, 545
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 152, 155, 458
BstNI	CCWGG	2 cut(s)	100, 550
BstSCI	CCNGG	3 cut(s)	98, 401, 548
BstSLI	GKGCMC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	3 cut(s)	193, 530, 545
BstYI	RGATCY	3 cut(s)	193, 530, 545
BsuRI	GGCC	3 cut(s)	261, 323, 518
BtsCI	GGATG	2 cut(s)	227, 293
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	3 cut(s)	222, 303, 422
Cac8I	GCNNGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	4 cut(s)	310, 322, 331, 516
CseI	GACGC	3 cut(s)	86, 127, 138
CviAII	CATG	2 cut(s)	55, 314
CviJI	RGCY	8 cut(s)	37, 71, 85, 118, 216, 261, 323, 518
CviKI_1	RGCY	8 cut(s)	37, 71, 85, 118, 216, 261, 323, 518
DdeI	CTNAG	2 cut(s)	162, 569
DpnI	GATC	5 cut(s)	195, 277, 393, 532, 547
DpnII	GATC	5 cut(s)	193, 275, 391, 530, 545
DraI	TTTAAA	2 cut(s)	384, 445
DrdI	GACNNNNNNGTC	1 cut(s)	71
DriI	GACNNNNNGTC	1 cut(s)	174
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	312
Eam1105I	GACNNNNNGTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	593
Eco24I	GRGCYC	2 cut(s)	39, 87
Eco47I	GGWCC	2 cut(s)	310, 331
Eco57I	CTGAAG	1 cut(s)	505
EcoNI	CCTNNNNNAGG	1 cut(s)	97
EcoRII	CCWGG	2 cut(s)	98, 548
EcoT14I	CCWWGG	1 cut(s)	593
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	2 cut(s)	39, 87
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	2 cut(s)	58, 317
FaiI	YATR	5 cut(s)	56, 315, 360, 420, 435
FatI	CATG	2 cut(s)	54, 313
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	4 cut(s)	147, 156, 217, 397
FokI	GGATG	2 cut(s)	214, 300
FriOI	GRGCYC	2 cut(s)	39, 87
Fsp4HI	GCNGC	4 cut(s)	147, 156, 217, 397
FspBI	CTAG	1 cut(s)	594
GluI	GCNGC	4 cut(s)	147, 156, 217, 397
HaeIII	GGCC	3 cut(s)	261, 323, 518
HapII	CCGG	2 cut(s)	135, 402
HgaI	GACGC	3 cut(s)	86, 127, 138
Hin1I	GRCGYC	3 cut(s)	78, 138, 149
Hin1II	CATG	2 cut(s)	58, 317
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	3 cut(s)	183, 239, 589
HpaII	CCGG	2 cut(s)	135, 402
HphI	GGTGA	2 cut(s)	124, 365
Hpy166II	GTNNAC	2 cut(s)	28, 76
Hpy188I	TCNGA	2 cut(s)	143, 198
Hpy188III	TCNNGA	2 cut(s)	389, 561
Hpy8I	GTNNAC	2 cut(s)	28, 76
Hpy99I	CGWCG	4 cut(s)	77, 80, 143, 582
HpyAV	CCTTC	3 cut(s)	406, 529, 544
HpyCH4III	ACNGT	4 cut(s)	25, 209, 486, 508
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	4 cut(s)	227, 347, 379, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 152, 155, 458
HpyF3I	CTNAG	2 cut(s)	162, 569
HpySE526I	ACGT	1 cut(s)	577
Hsp92I	GRCGYC	3 cut(s)	78, 138, 149
Hsp92II	CATG	2 cut(s)	58, 317
Kzo9I	GATC	5 cut(s)	193, 275, 391, 530, 545
LmnI	GCTCC	2 cut(s)	68, 143
LpnPI	CCDG	8 cut(s)	85, 112, 148, 284, 291, 415, 535, 562
LweI	GCATC	2 cut(s)	236, 334
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	3 cut(s)	209, 301, 486
MalI	GATC	5 cut(s)	195, 277, 393, 532, 547
MbiI	CCGCTC	2 cut(s)	9, 146
MboI	GATC	5 cut(s)	193, 275, 391, 530, 545
MboII	GAAGA	5 cut(s)	53, 178, 203, 329, 565
MflI	RGATCY	3 cut(s)	193, 530, 545
MhlI	GDGCHC	3 cut(s)	39, 87, 106
MluCI	AATT	1 cut(s)	373
MlyI	GAGTC	2 cut(s)	233, 598
MmeI	TCCRAC	2 cut(s)	121, 279
Mph1103I	ATGCAT	1 cut(s)	349
MseI	TTAA	4 cut(s)	383, 444, 503, 607
MspI	CCGG	2 cut(s)	135, 402
MspR9I	CCNGG	3 cut(s)	100, 403, 550
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	2 cut(s)	100, 550
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	4 cut(s)	77, 152, 155, 458
NciI	CCSGG	1 cut(s)	403
NdeII	GATC	5 cut(s)	193, 275, 391, 530, 545
NlaIII	CATG	2 cut(s)	58, 317
NlaIV	GGNNCC	5 cut(s)	70, 105, 311, 532, 547
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	349
PasI	CCCWGGG	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 184
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	183
PfoI	TCCNGGA	1 cut(s)	548
PkrI	GCNGC	4 cut(s)	148, 157, 218, 398
PleI	GAGTC	2 cut(s)	233, 597
PpsI	GAGTC	2 cut(s)	233, 597
Psp6I	CCWGG	2 cut(s)	98, 548
PspGI	CCWGG	2 cut(s)	98, 548
PspN4I	GGNNCC	5 cut(s)	70, 105, 311, 532, 547
PspPI	GGNCC	4 cut(s)	310, 322, 331, 516
PsuI	RGATCY	3 cut(s)	193, 530, 545
SalI	GTCGAC	1 cut(s)	74
SaqAI	TTAA	4 cut(s)	383, 444, 503, 607
SatI	GCNGC	4 cut(s)	147, 156, 217, 397
Sau3AI	GATC	5 cut(s)	193, 275, 391, 530, 545
Sau96I	GGNCC	4 cut(s)	310, 322, 331, 516
SchI	GAGTC	2 cut(s)	233, 598
ScrFI	CCNGG	3 cut(s)	100, 403, 550
SduI	GDGCHC	3 cut(s)	39, 87, 106
SetI	ASST	5 cut(s)	54, 120, 178, 339, 580
SfaNI	GCATC	2 cut(s)	236, 334
SgrAI	CRCCGGYG	1 cut(s)	134
SgrDI	CGTCGACG	1 cut(s)	74
SinI	GGWCC	2 cut(s)	310, 331
SmiI	ATTTAAAT	1 cut(s)	384
SmlI	CTYRAG	3 cut(s)	119, 559, 583
SmoI	CTYRAG	3 cut(s)	119, 559, 583
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	9 cut(s)	9, 90, 126, 146, 156, 180, 217, 397, 566
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	3 cut(s)	98, 401, 548
StyI	CCWWGG	1 cut(s)	593
SwaI	ATTTAAAT	1 cut(s)	384
TaaI	ACNGT	4 cut(s)	25, 209, 486, 508
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	4 cut(s)	33, 75, 237, 264
TasI	AATT	1 cut(s)	373
TauI	GCSGC	4 cut(s)	149, 158, 219, 399
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	4 cut(s)	383, 444, 503, 607
Tru9I	TTAA	4 cut(s)	383, 444, 503, 607
TscAI	CASTG	3 cut(s)	229, 310, 429
TseFI	GTSAC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	330, 488
TspGWI	ACGGA	4 cut(s)	81, 176, 268, 492
TspRI	CASTG	3 cut(s)	229, 310, 429
VpaK11BI	GGWCC	2 cut(s)	310, 331
XagI	CCTNNNNNAGG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	373
XmaJI	CCTAGG	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	1 cut(s)	594
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.