Prupe.7G055300_v2.0.a1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011429
Physical Location & Seq
Reverse (-)
9411293 .. 9415287
3995 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G055300.1

Sequence Viewer

Length: 507 bp
ATGGAAGGCCACGACGACGACGTTTCAATGGAGGACGCAGTCGTTGAGCCCATGCCTAGGAGAACCAAAGGCAGAGGAGGAAGCGGACGTCTCAGATCACAATCCAAAACCCTAGACCACCCAAACAATCCATTTTTCCTCGATGCGAATGAGCCCCCTTCTCAAGGCTACGCTCCTCAACGTTCTATTGAAGGATGGATTGTATTGATCACTGGGATACATGAAGAGGCACAGGAAGATCATATTTTGAATGCATTTGGTTACTATGGGGAAATCAAGAATTTGCATATGAATCTTGACCGTCGCACTGGATTTGCTAAGGGTAATGCGCTGATTGAATATGAGACATTTGAGGAAGCTGATGCAGCAATATCAGCAATGAATGGCACTAAACTTTTTGGTCGGACCATCCTTGTTAACTCGGCTTTCATGACTGGTCCCTTTGGAAGTAATTCAAGAAGATCACCACAATTGAACCGCTCCAGAAGTCCAAGGATGAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 map03013 map03015 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

169

Amino Acids

18.8

Weight (kDa)

6.21

Isoelectric Point (pI)

71.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011429)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51510
fragaria_vesca FvH4_3g28440
malus_domestica MD03G1171900.v1.1 MD11G1189700.v1.1 MD12G1080200.v1.1
prunus_persica Prupe.4G255000_v2.0.a1 Prupe.7G055300_v2.0.a1
pyrus_communis pycom03g12900 pycom11g16600 pycom12g06680
rosa_chinensis RchiOBHm_Chr5g0053031
rosa_laevigata RLG00000034777
rosa_multiflora Rmu_sc0006573.1_g000011
rosa_roxburghii Rroxscaffold_1G00028840
rosa_rugosa Rorug05G0268700
rosa_samantha Rh5AG340900 Rh5BG351500 Rh5CG377700 Rh5DG367900
rosa_wichuraiana Rw5G032140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 91
AccBSI CCGCTC 1 cut(s) 480
AciI CCGC 2 cut(s) 84, 478
AclI AACGTT 1 cut(s) 181
AcsI RAATTY 1 cut(s) 280
AcyI GRCGYC 1 cut(s) 88
AfiI CCNNNNNNNGG 2 cut(s) 57, 164
AgsI TTSAA 6 cut(s) 27, 191, 250, 338, 456, 475
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw26I GTCTC 2 cut(s) 95, 338
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 280
Asp700I GAANNNNTTC 1 cut(s) 451
AspA2I CCTAGG 1 cut(s) 56
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 2 cut(s) 405, 437
AsuHPI GGTGA 1 cut(s) 456
AvaII GGWCC 2 cut(s) 405, 437
AvrII CCTAGG 1 cut(s) 56
BanII GRGCYC 2 cut(s) 51, 156
BbvI GCAGC 1 cut(s) 377
BccI CCATC 2 cut(s) 189, 416
BciVI GTATCC 1 cut(s) 210
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 95, 338
BfaI CTAG 2 cut(s) 57, 113
BfuI GTATCC 1 cut(s) 210
BisI GCNGC 1 cut(s) 366
BlnI CCTAGG 1 cut(s) 56
BlsI GCNGC 1 cut(s) 367
Bme18I GGWCC 2 cut(s) 405, 437
BmgT120I GGNCC 2 cut(s) 405, 437
BmiI GGNNCC 1 cut(s) 439
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 2 cut(s) 133, 352
BmuI ACTGGG 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 466
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 56, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 164
Bse1I ACTGG 3 cut(s) 217, 313, 439
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 100
BseDI CCNNGG 2 cut(s) 56, 491
BseGI GGATG 3 cut(s) 200, 408, 501
BseJI GATNNNNATC 1 cut(s) 100
BseLI CCNNNNNNNGG 2 cut(s) 57, 164
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 106
BseNI ACTGG 3 cut(s) 217, 313, 439
BseRI GAGGAG 2 cut(s) 90, 165
BseXI GCAGC 1 cut(s) 377
BshFI GGCC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 57, 164
BsmAI GTCTC 2 cut(s) 95, 338
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 423
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 1 cut(s) 9
Bsp1286I GDGCHC 2 cut(s) 51, 156
Bsp143I GATC 4 cut(s) 95, 207, 238, 461
BspACI CCGC 2 cut(s) 84, 478
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 105
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 439
BsrBI CCGCTC 1 cut(s) 480
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 3 cut(s) 217, 313, 439
BssECI CCNNGG 2 cut(s) 56, 491
BssMI GATC 4 cut(s) 95, 207, 238, 461
BssNI GRCGYC 1 cut(s) 88
BssT1I CCWWGG 2 cut(s) 56, 491
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 92, 318
BstENI CCTNNNNNAGG 1 cut(s) 162
BstF5I GGATG 3 cut(s) 200, 408, 501
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 4 cut(s) 98, 210, 241, 464
BstMAI GTCTC 2 cut(s) 95, 338
BstMBI GATC 4 cut(s) 95, 207, 238, 461
BstMWI GCNNNNNNNGC 2 cut(s) 365, 374
BstV1I GCAGC 1 cut(s) 377
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 3 cut(s) 200, 408, 501
BtsIMutI CAGTG 2 cut(s) 210, 306
CciI TCATGA 1 cut(s) 429
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 405, 437
CseI GACGC 1 cut(s) 44
CviAII CATG 3 cut(s) 52, 221, 430
CviJI RGCY 6 cut(s) 9, 49, 154, 168, 359, 425
CviKI_1 RGCY 6 cut(s) 9, 49, 154, 168, 359, 425
DdeI CTNAG 2 cut(s) 92, 318
DpnI GATC 4 cut(s) 97, 209, 240, 463
DpnII GATC 4 cut(s) 95, 207, 238, 461
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Eco130I CCWWGG 2 cut(s) 56, 491
Eco24I GRGCYC 2 cut(s) 51, 156
Eco47I GGWCC 2 cut(s) 405, 437
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoT14I CCWWGG 2 cut(s) 56, 491
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 2 cut(s) 51, 156
ErhI CCWWGG 2 cut(s) 56, 491
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 3 cut(s) 55, 224, 433
FaiI YATR 8 cut(s) 53, 222, 243, 267, 288, 290, 342, 431
FaqI GGGAC 1 cut(s) 423
FatI CATG 3 cut(s) 51, 220, 429
FauNDI CATATG 1 cut(s) 288
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 366
FokI GGATG 2 cut(s) 207, 395
FriOI GRGCYC 2 cut(s) 51, 156
Fsp4HI GCNGC 1 cut(s) 366
FspBI CTAG 2 cut(s) 57, 113
GlaI GCGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 1 cut(s) 9
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 331
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 3 cut(s) 55, 224, 433
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 1 cut(s) 292
HpaI GTTAAC 1 cut(s) 418
HphI GGTGA 1 cut(s) 456
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 2 cut(s) 95, 405
Hpy188III TCNNGA 5 cut(s) 277, 296, 430, 456, 483
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 4 cut(s) 17, 20, 23, 306
HpyAV CCTTC 2 cut(s) 168, 185
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 3 cut(s) 21, 88, 181
HpyCH4V TGCA 3 cut(s) 254, 286, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 374
HpyF3I CTNAG 2 cut(s) 92, 318
HpySE526I ACGT 3 cut(s) 21, 88, 181
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 3 cut(s) 55, 224, 433
HspAI GCGC 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 207
KspAI GTTAAC 1 cut(s) 418
Kzo9I GATC 4 cut(s) 95, 207, 238, 461
LmnI GCTCC 2 cut(s) 178, 485
LpnPI CCDG 5 cut(s) 198, 218, 294, 420, 496
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 2 cut(s) 133, 352
MaeI CTAG 2 cut(s) 57, 113
MaeII ACGT 3 cut(s) 21, 88, 181
MaeIII GTNAC 1 cut(s) 260
MalI GATC 4 cut(s) 97, 209, 240, 463
MbiI CCGCTC 1 cut(s) 480
MboI GATC 4 cut(s) 95, 207, 238, 461
MboII GAAGA 3 cut(s) 236, 248, 471
MfeI CAATTG 1 cut(s) 470
MhlI GDGCHC 2 cut(s) 51, 156
MluCI AATT 3 cut(s) 280, 451, 470
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 7 cut(s) 25, 68, 71, 149, 186, 220, 346
Mph1103I ATGCAT 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 451
MseI TTAA 1 cut(s) 417
MunI CAATTG 1 cut(s) 470
Mva1269I GAATGC 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 365, 374
NdeI CATATG 1 cut(s) 288
NdeII GATC 4 cut(s) 95, 207, 238, 461
NlaIII CATG 3 cut(s) 55, 224, 433
NlaIV GGNNCC 1 cut(s) 439
NmeAIII GCCGAG 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 256
PagI TCATGA 1 cut(s) 429
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 451
PfeI GAWTC 1 cut(s) 292
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 367
Psp1406I AACGTT 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 2 cut(s) 405, 437
PsyI GACNNNGTC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 4 cut(s) 95, 207, 238, 461
Sau96I GGNCC 2 cut(s) 405, 437
SduI GDGCHC 2 cut(s) 51, 156
SetI ASST 4 cut(s) 24, 91, 184, 361
SfaNI GCATC 2 cut(s) 133, 352
SinI GGWCC 2 cut(s) 405, 437
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
Sse9I AATT 3 cut(s) 280, 451, 470
SsiI CCGC 2 cut(s) 84, 478
SspMI CTAG 2 cut(s) 57, 113
StyI CCWWGG 2 cut(s) 56, 491
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 3 cut(s) 24, 91, 184
TaqI TCGA 1 cut(s) 141
TasI AATT 3 cut(s) 280, 451, 470
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 2 cut(s) 217, 313
TseI GCWGC 1 cut(s) 365
TspDTI ATGAA 4 cut(s) 237, 305, 395, 418
TspRI CASTG 2 cut(s) 217, 313
Tth111I GACNNNGTC 1 cut(s) 38
VpaK11BI GGWCC 2 cut(s) 405, 437
XagI CCTNNNNNAGG 1 cut(s) 162
XapI RAATTY 1 cut(s) 280
XmaJI CCTAGG 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 451
XspI CTAG 2 cut(s) 57, 113
ZraI GACGTC 1 cut(s) 89
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.