Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011429

Physical Location & Seq

Genomic Coordinates Forward (+)

17686233 .. 17692893

Gene Structure 6661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G255000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCGAGCGCAGACGTAGAGACCGTGGACTTCGATTTTCAAGAAGACGATCTCATGGACGAGGAAGGAGCCGCCGACGCGGAGCCCTCGGCGTCCCCTAGGGCCCCACAACCCAAGCTCAAGTCCGCAATCACCGGCGTCGGCGCGTCCGCCTCACCCGCCGCCCCTAAAAAGACTAAAGGTCGCGGATTTCGTGAAGATCTCAATCCCGACCGTAACAACCGCCTCGCTGCCTCCGACTTCGACTCCCTCAACTCCTCAGACGGCCTCGAACCCCAACGATCTGTTGAGGGATGGATTATTCTGGTCACTGGGGTACATGAGGAAGCCCAAGAGGATCATCTACATAATGCATTTGGTGAATTTGGAGAGATAAAAAATTTGCATTTAAATCTTGATCGCCGCACTGGGTTTGTGAAGGGATATGCGCTGATTGAATATGAGAGTTTTGAAGAGGCACAAGCTGCGATATCTGGAATGAATGAAGCTGCATTACTTACACAGATTCTTAATGTTGATTGGGCCTTCAGCAATGGATCCTTCCTTGATGGATCCAGGAAGAAGACCACAAGACCTCTACGAGAACGTCGTTCGAGGAGTCCCCCTAGGAGGAGATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000381 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035145 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0048024 GO:0048518 GO:0048519 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

207

Amino Acids

22.75

Weight (kDa)

5.04

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51510
fragaria_vesca	FvH4_3g28440
malus_domestica	MD03G1171900.v1.1 MD11G1189700.v1.1 MD12G1080200.v1.1
prunus_persica	Prupe.4G255000_v2.0.a1 Prupe.7G055300_v2.0.a1
pyrus_communis	pycom03g12900 pycom11g16600 pycom12g06680
rosa_chinensis	RchiOBHm_Chr5g0053031
rosa_laevigata	RLG00000034777
rosa_multiflora	Rmu_sc0006573.1_g000011
rosa_roxburghii	Rroxscaffold_1G00028840
rosa_rugosa	Rorug05G0268700
rosa_samantha	Rh5AG340900 Rh5BG351500 Rh5CG377700 Rh5DG367900
rosa_wichuraiana	Rw5G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	80, 146, 186
AciI	CCGC	9 cut(s)	72, 80, 126, 150, 159, 162, 186, 223, 403
AclWI	GGATC	5 cut(s)	345, 531, 544, 546, 559
AcsI	RAATTY	2 cut(s)	362, 379
AcuI	CTGAAG	1 cut(s)	511
AcyI	GRCGYC	2 cut(s)	92, 138
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	609
AgsI	TTSAA	3 cut(s)	41, 437, 452
AhdI	GACNNNNNGTC	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	554
AluBI	AGCT	3 cut(s)	118, 464, 488
AluI	AGCT	3 cut(s)	118, 464, 488
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	5 cut(s)	345, 531, 544, 546, 559
AoxI	GGCC	3 cut(s)	102, 265, 522
ApaI	GGGCCC	1 cut(s)	106
ApeKI	GCWGC	3 cut(s)	230, 464, 488
ApoI	RAATTY	2 cut(s)	362, 379
AspA2I	CCTAGG	2 cut(s)	98, 605
AspLEI	GCGC	3 cut(s)	11, 146, 430
AspS9I	GGNCC	3 cut(s)	102, 103, 522
AsuHPI	GGTGA	3 cut(s)	124, 147, 371
AvrII	CCTAGG	2 cut(s)	98, 605
BaeGI	GKGCMC	1 cut(s)	106
BamHI	GGATCC	2 cut(s)	536, 551
BanII	GRGCYC	2 cut(s)	87, 106
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
BbsI	GAAGAC	2 cut(s)	51, 569
BbvI	GCAGC	3 cut(s)	217, 451, 475
BccI	CCATC	2 cut(s)	288, 542
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	2 cut(s)	99, 606
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	6 cut(s)	72, 162, 231, 403, 465, 489
BlnI	CCTAGG	2 cut(s)	98, 605
BlsI	GCNGC	6 cut(s)	73, 163, 232, 404, 466, 490
Bme1390I	CCNGG	1 cut(s)	556
BmeRI	GACNNNNNGTC	1 cut(s)	180
BmgT120I	GGNCC	3 cut(s)	102, 103, 522
BmiI	GGNNCC	6 cut(s)	70, 84, 104, 105, 538, 553
BmrFI	CCNGG	1 cut(s)	556
BmrI	ACTGGG	2 cut(s)	321, 417
BmuI	ACTGGG	2 cut(s)	321, 417
BpiI	GAAGAC	2 cut(s)	51, 569
BpuEI	CTTGAG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	204
BsaHI	GRCGYC	2 cut(s)	92, 138
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	4 cut(s)	24, 87, 98, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	316, 412
Bse3DI	GCAATG	1 cut(s)	538
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	556
BseDI	CCNNGG	4 cut(s)	24, 87, 98, 605
BseGI	GGATG	1 cut(s)	299
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	316, 412
BseRI	GAGGAG	2 cut(s)	247, 610
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	217, 451, 475
Bsh1236I	CGCG	3 cut(s)	80, 146, 186
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	3 cut(s)	104, 267, 524
BsiEI	CGRYCG	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	79, 585
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	79, 585
BsnI	GGCC	3 cut(s)	104, 267, 524
Bso31I	GGTCTC	1 cut(s)	14
Bsp120I	GGGCCC	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	87, 106
Bsp143I	GATC	7 cut(s)	49, 199, 281, 337, 397, 536, 551
BspACI	CCGC	9 cut(s)	72, 80, 126, 150, 159, 162, 186, 223, 403
BspANI	GGCC	3 cut(s)	104, 267, 524
BspCNI	CTCAG	1 cut(s)	272
BspFNI	CGCG	3 cut(s)	80, 146, 186
BspLI	GGNNCC	6 cut(s)	70, 84, 104, 105, 538, 553
BspPI	GGATC	5 cut(s)	345, 531, 544, 546, 559
BspTNI	GGTCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	316, 412
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	4 cut(s)	24, 87, 98, 605
BssMI	GATC	7 cut(s)	49, 199, 281, 337, 397, 536, 551
BssNI	GRCGYC	2 cut(s)	92, 138
BssT1I	CCWWGG	2 cut(s)	98, 605
Bst2UI	CCWGG	1 cut(s)	556
Bst4CI	ACNGT	2 cut(s)	25, 215
Bst6I	CTCTTC	1 cut(s)	447
BstACI	GRCGYC	2 cut(s)	92, 138
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	259
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	299
BstFNI	CGCG	3 cut(s)	80, 146, 186
BstHHI	GCGC	3 cut(s)	11, 146, 430
BstKTI	GATC	7 cut(s)	52, 202, 284, 340, 400, 539, 554
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	7 cut(s)	49, 199, 281, 337, 397, 536, 551
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 158, 464
BstNI	CCWGG	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	554
BstSLI	GKGCMC	1 cut(s)	106
BstUI	CGCG	3 cut(s)	80, 146, 186
BstV1I	GCAGC	3 cut(s)	217, 451, 475
BstV2I	GAAGAC	2 cut(s)	51, 569
BstX2I	RGATCY	3 cut(s)	199, 536, 551
BstYI	RGATCY	3 cut(s)	199, 536, 551
BsuRI	GGCC	3 cut(s)	104, 267, 524
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	299
BtsIMutI	CAGTG	2 cut(s)	309, 405
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	3 cut(s)	11, 146, 430
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	3 cut(s)	102, 103, 522
CseI	GACGC	4 cut(s)	81, 86, 127, 135
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	2 cut(s)	55, 320
CviJI	RGCY	9 cut(s)	71, 85, 104, 118, 267, 329, 464, 488, 524
CviKI_1	RGCY	9 cut(s)	71, 85, 104, 118, 267, 329, 464, 488, 524
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	7 cut(s)	51, 201, 283, 339, 399, 538, 553
DpnII	GATC	7 cut(s)	49, 199, 281, 337, 397, 536, 551
DraI	TTTAAA	1 cut(s)	390
DriI	GACNNNNNGTC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	447
Eam1105I	GACNNNNNGTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	98, 605
Eco24I	GRGCYC	2 cut(s)	87, 106
Eco31I	GGTCTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	471
Eco57I	CTGAAG	1 cut(s)	511
EcoO109I	RGGNCCY	2 cut(s)	102, 103
EcoRII	CCWGG	1 cut(s)	554
EcoRV	GATATC	1 cut(s)	471
EcoT14I	CCWWGG	2 cut(s)	98, 605
EcoT22I	ATGCAT	1 cut(s)	355
EcoT38I	GRGCYC	2 cut(s)	87, 106
ErhI	CCWWGG	2 cut(s)	98, 605
FaeI	CATG	2 cut(s)	58, 323
FaiI	YATR	5 cut(s)	56, 321, 348, 426, 441
FaqI	GGGAC	2 cut(s)	79, 585
FatI	CATG	2 cut(s)	54, 319
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	6 cut(s)	72, 162, 231, 403, 465, 489
FokI	GGATG	1 cut(s)	306
FriOI	GRGCYC	2 cut(s)	87, 106
Fsp4HI	GCNGC	6 cut(s)	72, 162, 231, 403, 465, 489
FspBI	CTAG	2 cut(s)	99, 606
GlaI	GCGC	3 cut(s)	10, 145, 429
GluI	GCNGC	6 cut(s)	72, 162, 231, 403, 465, 489
HaeIII	GGCC	3 cut(s)	104, 267, 524
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	4 cut(s)	81, 86, 127, 135
HhaI	GCGC	3 cut(s)	11, 146, 430
Hin1I	GRCGYC	2 cut(s)	92, 138
Hin1II	CATG	2 cut(s)	58, 323
Hin6I	GCGC	3 cut(s)	9, 144, 428
HinP1I	GCGC	3 cut(s)	9, 144, 428
HinfI	GANTC	3 cut(s)	245, 505, 598
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	3 cut(s)	124, 147, 371
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	238, 262
Hpy188III	TCNNGA	5 cut(s)	41, 194, 209, 395, 474
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	3 cut(s)	80, 143, 591
HpyAV	CCTTC	4 cut(s)	59, 412, 535, 550
HpyCH4III	ACNGT	2 cut(s)	25, 215
HpyCH4IV	ACGT	2 cut(s)	15, 586
HpyCH4V	TGCA	3 cut(s)	353, 385, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 158, 464
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	2 cut(s)	15, 586
Hsp92I	GRCGYC	2 cut(s)	92, 138
Hsp92II	CATG	2 cut(s)	58, 323
HspAI	GCGC	3 cut(s)	9, 144, 428
Kzo9I	GATC	7 cut(s)	49, 199, 281, 337, 397, 536, 551
LmnI	GCTCC	2 cut(s)	68, 82
LpnPI	CCDG	7 cut(s)	148, 290, 297, 393, 459, 541, 568
Lsp1109I	GCAGC	3 cut(s)	217, 451, 475
MaeI	CTAG	2 cut(s)	99, 606
MaeII	ACGT	2 cut(s)	15, 586
MaeIII	GTNAC	2 cut(s)	215, 307
MalI	GATC	7 cut(s)	51, 201, 283, 339, 399, 538, 553
MboI	GATC	7 cut(s)	49, 199, 281, 337, 397, 536, 551
MboII	GAAGA	5 cut(s)	56, 209, 464, 571, 574
MflI	RGATCY	3 cut(s)	199, 536, 551
MhlI	GDGCHC	2 cut(s)	87, 106
MluCI	AATT	2 cut(s)	362, 379
MlyI	GAGTC	2 cut(s)	239, 607
MmeI	TCCRAC	1 cut(s)	261
Mph1103I	ATGCAT	1 cut(s)	355
MseI	TTAA	2 cut(s)	389, 510
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	556
MvnI	CGCG	3 cut(s)	80, 146, 186
MwoI	GCNNNNNNNGC	3 cut(s)	77, 158, 464
NdeII	GATC	7 cut(s)	49, 199, 281, 337, 397, 536, 551
NlaIII	CATG	2 cut(s)	58, 323
NlaIV	GGNNCC	6 cut(s)	70, 84, 104, 105, 538, 553
NmeAIII	GCCGAG	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	4 cut(s)	21, 190, 234, 586
PfeI	GAWTC	1 cut(s)	505
PfoI	TCCNGGA	1 cut(s)	554
PkrI	GCNGC	6 cut(s)	73, 163, 232, 404, 466, 490
PleI	GAGTC	2 cut(s)	239, 606
PpsI	GAGTC	2 cut(s)	239, 606
Psp6I	CCWGG	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	554
PspN4I	GGNNCC	6 cut(s)	70, 84, 104, 105, 538, 553
PspOMI	GGGCCC	1 cut(s)	102
PspPI	GGNCC	3 cut(s)	102, 103, 522
PsuI	RGATCY	3 cut(s)	199, 536, 551
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	389, 510
SatI	GCNGC	6 cut(s)	72, 162, 231, 403, 465, 489
Sau3AI	GATC	7 cut(s)	49, 199, 281, 337, 397, 536, 551
Sau96I	GGNCC	3 cut(s)	102, 103, 522
SchI	GAGTC	2 cut(s)	239, 607
ScrFI	CCNGG	1 cut(s)	556
SduI	GDGCHC	2 cut(s)	87, 106
SetI	ASST	7 cut(s)	18, 120, 184, 466, 490, 577, 589
SgrAI	CRCCGGYG	1 cut(s)	134
SmiI	ATTTAAAT	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	362, 379
SsiI	CCGC	9 cut(s)	72, 80, 126, 150, 159, 162, 186, 223, 403
SspMI	CTAG	2 cut(s)	99, 606
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	2 cut(s)	98, 605
SwaI	ATTTAAAT	1 cut(s)	390
TaaI	ACNGT	2 cut(s)	25, 215
TaiI	ACGT	2 cut(s)	18, 589
TaqI	TCGA	4 cut(s)	33, 243, 270, 593
TasI	AATT	2 cut(s)	362, 379
TauI	GCSGC	3 cut(s)	74, 164, 405
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	2 cut(s)	389, 510
Tru9I	TTAA	2 cut(s)	389, 510
TscAI	CASTG	2 cut(s)	316, 412
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	3 cut(s)	230, 464, 488
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	494, 498
TspRI	CASTG	2 cut(s)	316, 412
XapI	RAATTY	2 cut(s)	362, 379
XmaJI	CCTAGG	2 cut(s)	98, 605
XspI	CTAG	2 cut(s)	99, 606
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.