Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011429

Physical Location & Seq

Genomic Coordinates Reverse (-)

18274951 .. 18276069

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g16600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTGTGCCCAAAAGCCGAAACCCATAAATCCCAATCGTCCCAATTCCCGAACCCTTGCGCCCTATTTCCTTCCTCATCTAAAACTAGAACCATCGAGAGCTGTGACTGTGAGGGCATCAGCTATGGCGAGCGGAGACGTAGAAACGGTGGACTTCGAGCCCGAAGATGACGACCTCATGGACGAGGACGGAGCCGTCGACGCCGAGCCCTCCGCCTCCCCCAGGGCCCCACTCCCCAAGCTCAAGTCCGCTATCACCGGCGTTGGAGCGGCGTCCGCCGTCCCTAAGAAGACCAAAGGTCGCGGATTCCGTGAAGATCTCAATGCCGACCGTAACAGCCGCCTCGCTGCCTCCGACTTCGACTCTCTCAACTCTTCTGACGGCCTCGAACCCCAACGATTATTCAACTGCTTCTTATGCAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000381 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035145 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046700 GO:0048024 GO:0048518 GO:0048519 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

143

Amino Acids

15.24

Weight (kDa)

5.19

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51510
fragaria_vesca	FvH4_3g28440
malus_domestica	MD03G1171900.v1.1 MD11G1189700.v1.1 MD12G1080200.v1.1
prunus_persica	Prupe.4G255000_v2.0.a1 Prupe.7G055300_v2.0.a1
pyrus_communis	pycom03g12900 pycom11g16600 pycom12g06680
rosa_chinensis	RchiOBHm_Chr5g0053031
rosa_laevigata	RLG00000034777
rosa_multiflora	Rmu_sc0006573.1_g000011
rosa_roxburghii	Rroxscaffold_1G00028840
rosa_rugosa	Rorug05G0268700
rosa_samantha	Rh5AG340900 Rh5BG351500 Rh5CG377700 Rh5DG367900
rosa_wichuraiana	Rw5G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AccBSI	CCGCTC	2 cut(s)	132, 269
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	303
AciI	CCGC	7 cut(s)	132, 213, 249, 269, 276, 303, 340
AcyI	GRCGYC	2 cut(s)	201, 272
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	406
AhdI	GACNNNNNGTC	1 cut(s)	297
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	3 cut(s)	101, 122, 241
AluI	AGCT	3 cut(s)	101, 122, 241
Alw26I	GTCTC	1 cut(s)	129
AoxI	GGCC	2 cut(s)	225, 382
ApaI	GGGCCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	225, 226
AsuHPI	GGTGA	1 cut(s)	247
BaeGI	GKGCMC	2 cut(s)	10, 229
BanII	GRGCYC	3 cut(s)	162, 210, 229
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	3 cut(s)	179, 263, 397
BciT130I	CCWGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	86
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	3 cut(s)	270, 340, 348
BlsI	GCNGC	3 cut(s)	271, 341, 349
Bme1390I	CCNGG	1 cut(s)	223
BmeRI	GACNNNNNGTC	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	225, 226
BmiI	GGNNCC	3 cut(s)	193, 227, 228
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	227
BsaHI	GRCGYC	2 cut(s)	201, 272
BsaJI	CCNNGG	2 cut(s)	221, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse118I	RCCGGY	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	2 cut(s)	221, 222
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	427
BseSI	GKGCMC	2 cut(s)	10, 229
BseXI	GCAGC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	303
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	227, 384
BsiEI	CGRYCG	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	2 cut(s)	24, 266
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	129
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	2 cut(s)	24, 266
BsnI	GGCC	2 cut(s)	227, 384
Bsp120I	GGGCCC	1 cut(s)	225
Bsp1286I	GDGCHC	4 cut(s)	10, 162, 210, 229
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	7 cut(s)	132, 213, 249, 269, 276, 303, 340
BspANI	GGCC	2 cut(s)	227, 384
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	193, 227, 228
BsrBI	CCGCTC	2 cut(s)	132, 269
BsrDI	GCAATG	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	221, 222
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	2 cut(s)	201, 272
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	3 cut(s)	109, 148, 332
Bst6I	CTCTTC	1 cut(s)	379
BstACI	GRCGYC	2 cut(s)	201, 272
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	285
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	316
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 275, 417
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstSLI	GKGCMC	2 cut(s)	10, 229
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	227, 384
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	225, 226
CseI	GACGC	2 cut(s)	209, 261
CviAII	CATG	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DrdI	GACNNNNNNGTC	1 cut(s)	194
DriI	GACNNNNNGTC	1 cut(s)	297
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	379
Eam1105I	GACNNNNNGTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	379
EciI	GGCGGA	2 cut(s)	202, 265
Eco24I	GRGCYC	3 cut(s)	162, 210, 229
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoO109I	RGGNCCY	2 cut(s)	225, 226
EcoRII	CCWGG	1 cut(s)	221
EcoT38I	GRGCYC	3 cut(s)	162, 210, 229
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	1 cut(s)	181
FaiI	YATR	4 cut(s)	26, 125, 179, 418
FaqI	GGGAC	2 cut(s)	24, 266
FatI	CATG	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	270, 340, 348
FriOI	GRGCYC	3 cut(s)	162, 210, 229
Fsp4HI	GCNGC	3 cut(s)	270, 340, 348
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	3 cut(s)	270, 340, 348
HaeIII	GGCC	2 cut(s)	227, 384
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	2 cut(s)	209, 261
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	2 cut(s)	201, 272
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	306, 362
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	2 cut(s)	151, 199
Hpy188I	TCNGA	2 cut(s)	355, 379
Hpy188III	TCNNGA	2 cut(s)	48, 96
Hpy8I	GTNNAC	2 cut(s)	151, 199
Hpy99I	CGWCG	2 cut(s)	200, 203
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	3 cut(s)	109, 148, 332
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 275, 417
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	2 cut(s)	201, 272
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	2 cut(s)	191, 266
LpnPI	CCDG	3 cut(s)	208, 235, 271
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	103, 332
MalI	GATC	1 cut(s)	318
MbiI	CCGCTC	2 cut(s)	132, 269
MboI	GATC	1 cut(s)	316
MboII	GAAGA	4 cut(s)	176, 301, 326, 366
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	4 cut(s)	10, 162, 210, 229
MluCI	AATT	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	2 cut(s)	244, 378
MnlI	CCTC	9 cut(s)	84, 105, 178, 185, 220, 226, 353, 361, 395
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	200, 275, 417
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	3 cut(s)	193, 227, 228
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	103
PasI	CCCWGGG	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	3 cut(s)	195, 307, 351
PfeI	GAWTC	1 cut(s)	306
PkrI	GCNGC	3 cut(s)	271, 341, 349
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspN4I	GGNNCC	3 cut(s)	193, 227, 228
PspOMI	GGGCCC	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	225, 226
PsuI	RGATCY	1 cut(s)	316
SalI	GTCGAC	1 cut(s)	197
SatI	GCNGC	3 cut(s)	270, 340, 348
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	2 cut(s)	225, 226
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	4 cut(s)	10, 162, 210, 229
SetI	ASST	6 cut(s)	103, 124, 141, 177, 243, 301
SfaNI	GCATC	1 cut(s)	125
SgrAI	CRCCGGYG	1 cut(s)	257
SgrDI	CGTCGACG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	7 cut(s)	132, 213, 249, 269, 276, 303, 340
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	3 cut(s)	109, 148, 332
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	5 cut(s)	95, 156, 198, 360, 387
TasI	AATT	1 cut(s)	43
TauI	GCSGC	2 cut(s)	272, 342
TfiI	GAWTC	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	103
TspGWI	ACGGA	2 cut(s)	204, 299
XagI	CCTNNNNNAGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.