AT1G52080

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009965
Physical Location & Seq
Forward (+)
19369089 .. 19372121
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52080.2

Sequence Viewer

Length: 1722 bp
ATGATTATTACCACACACAAAAGAGATATAAACTTGTTGGTGCTTCAATTAGGAGCAGCTCTTGCTGTATCTTTTGCTGGATTTCTCTTTGCCCGATTTAGAAAGAATACAAAAAGAATTGGACCTACTTTGCCTCCTCTTCCACCTCACTCTTCTGATAATGGATACAGAGACTATTCCAACAAATCCATTGATAGACGAGATGAGGGCACGGAGAAGACGGATGAAGAGACTTTAATTGGTGTTTCGCCACGAAGGGAATGTGATCTTGATGAAAAAGATGTGTTTCTTTTACCGGAGTTTGAAGAGGAAGCTAAAAAGTTAGATTTGTTGGTTTGTGATGACTGTGAAACACCGAGGTCAGATATAACTGCTCCTTTAGCATTTCCTAGCGAAGAGGAAGCTGATCATGAGAATGAGATTAACCGGTTGAGAAACACGGTGAGAGCGCTCCGTGAGAGAGAGAGGTGTCTTGAGGATAAGTTGTTAGAATACTACAGCCTTAAGGAGCAGCAAAAGATTGCAATGGAACTGAGAAGTAGATTGAAGCTAAACCAGATGGAGACTAAAGTTTTCAATTTTAAGATCAAGAAGTTGCAAGCAGAGAACGAAAAACTTAAGGCTGAATGTTTTGAGCATTCTAAAGTTTTGTTGGAGCTGGATATGGCTAAGTCTCAGGTTCAAGTGCTTAAGAAGAAACTGAACATCAATACTCAACAACACGTAGCGCAGATCTTGTCGCTTAAACAACGAGTGGCGAGGCTGCAAGAAGAAGAAATCAAGGCTGTGTTACCTGATCTTGAAGCTGATAAGATGATGCAGAGGTTAAGGGATTTGGAAAGTGAGATCAACGAGCTTACGGATACTAACACGAGATTACAGTTTGAGAATTTTGAGCTTTCTGAGAAGCTGGAGTCTGTTCAAATCATAGCAAATTCAAAACTGGAGGAACCAGAGGAGATTGAGACATTACGCGAAGATTGTAACCGATTGAGGAGTGAAAATGAAGAGTTAAAGAAGGATGTCGAGCAGCTTCAAGGGGATCGATGTACTGACCTCGAGCAGCTCGTTTATCTCAGATGGATAAATGCTTGCTTAAGATATGAGCTAAGGACTTACCAGCCTCCTGCTGGTAAAACTGTTGCTAGGGATCTTAGTACTACTCTAAGTCCTACTTCAGAGGAGAAAGCAAAGCAACTGATCCTCGAATACGCACATAGCGAAGATAACACTGATTATGATCGATGGTCATCTTCGCAGGAAGAGTCATCAATGATCACTGACTCAATGTTTTTAGATGATTCTTCTGTTGACACTTTGTTTGCAACTAAAACAAAAAAGACAGGAAAGAAGAAGCTGATGCATAAGTTAATGAAGATCTTACATGGTAAAGATACTAAAGACAGCAAGAAGAGAGCTGGTTCATCGGAACCGAGCAGCTCAAACACTGGTGTTCATTCAACTCCTAGGCAGCTTAGATCAACACATTCAATGGACTTCCAAATGTTGATGCGTGGCAAAGACGAGGAAGAAGACTTCAAGAATCACATTGTGATGCTGCGTCGTAAGAGTGAAGCAGCAGGTTCTTCCACTTATGGAGAAGAACACTGTTTGGAAACAGATCAAAACGGGAAGAAAGAGCTGATTAAATTAGCAGATGCGCTTACGAAATCTCGTTCTACAAAGAAACTGCATAAGAAATCTGTGTCCTTCTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

573

Amino Acids

66.29

Weight (kDa)

5.89

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52080 AT1G52080
fragaria_vesca FvH4_6g32630
malus_domestica MD09G1199900.v1.1
prunus_persica Prupe.3G056400_v2.0.a1 Prupe.3G056400_v2.0.a1
pyrus_communis pycom09g11710 pycom17g18980
rosa_chinensis RchiOBHm_Chr2g0141111
rosa_laevigata RLG00000019915
rosa_multiflora Rmu_sc0006556.1_g000011
rosa_roxburghii Rroxscaffold_2G00104200
rosa_rugosa Rorug02G0367200 Rorug02G0367300 Rorug02G0367400
rosa_samantha Rh2AG418200 Rh2BG428200 Rh2CG404600 Rh2DG438000
rosa_wichuraiana Rw0G019790 Rw2G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1571
AccII CGCG 1 cut(s) 975
AclWI GGATC 3 cut(s) 1050, 1158, 1195
AcsI RAATTY 2 cut(s) 889, 934
AcuI CTGAAG 1 cut(s) 1161
AdeI CACNNNGTG 1 cut(s) 1552
AfaI GTAC 2 cut(s) 1051, 1159
AfeI AGCGCT 1 cut(s) 450
AfiI CCNNNNNNNGG 1 cut(s) 1130
AflII CTTAAG 4 cut(s) 503, 617, 689, 1096
AflIII ACRYGT 1 cut(s) 721
AgeI ACCGGT 1 cut(s) 426
Alw26I GTCTC 5 cut(s) 165, 224, 557, 678, 959
AlwI GGATC 3 cut(s) 1050, 1158, 1195
Ama87I CYCGRG 1 cut(s) 1058
Aor51HI AGCGCT 1 cut(s) 450
ApeKI GCWGC 9 cut(s) 56, 511, 763, 1030, 1063, 1437, 1471, 1558, 1577
ApoI RAATTY 2 cut(s) 889, 934
ArsI GACNNNNNNTTYG 2 cut(s) 1304, 1336
AsiGI ACCGGT 1 cut(s) 426
AspA2I CCTAGG 1 cut(s) 1466
AspLEI GCGC 3 cut(s) 451, 730, 1663
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 454
AvaI CYCGRG 1 cut(s) 1058
AvaII GGWCC 1 cut(s) 122
AvrII CCTAGG 1 cut(s) 1466
BaeGI GKGCMC 1 cut(s) 212
BauI CACGAG 1 cut(s) 871
BbsI GAAGAC 2 cut(s) 224, 1539
BbvI GCAGC 9 cut(s) 68, 523, 750, 1042, 1075, 1449, 1483, 1545, 1589
BccI CCATC 3 cut(s) 553, 1074, 1239
BciVI GTATCC 2 cut(s) 158, 856
BclI TGATCA 2 cut(s) 406, 1275
BcoDI GTCTC 5 cut(s) 165, 224, 557, 678, 959
BfaI CTAG 3 cut(s) 390, 1146, 1467
BfmI CTRYAG 1 cut(s) 496
BfoI RGCGCY 1 cut(s) 452
BfrI CTTAAG 4 cut(s) 503, 617, 689, 1096
BfuAI ACCTGC 1 cut(s) 1571
BfuI GTATCC 2 cut(s) 158, 856
BglII AGATCT 2 cut(s) 732, 1377
BisI GCNGC 9 cut(s) 57, 512, 764, 1031, 1064, 1438, 1472, 1559, 1578
BlnI CCTAGG 1 cut(s) 1466
BlsI GCNGC 9 cut(s) 58, 513, 765, 1032, 1065, 1439, 1473, 1560, 1579
BmcAI AGTACT 1 cut(s) 1159
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 1058
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 951, 1431
BmsI GCATC 5 cut(s) 807, 1350, 1500, 1545, 1648
BpiI GAAGAC 2 cut(s) 224, 1539
BpmI CTGGAG 2 cut(s) 932, 965
Bpu10I CCTNAGC 1 cut(s) 1109
BpuEI CTTGAG 1 cut(s) 494
Bsa29I ATCGAT 2 cut(s) 1045, 1243
BsaAI YACGTR 1 cut(s) 724
BsaBI GATNNNNATC 2 cut(s) 1239, 1249
BsaJI CCNNGG 2 cut(s) 356, 1466
BsaWI WCCGGW 2 cut(s) 295, 426
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 1 cut(s) 1130
Bse118I RCCGGY 1 cut(s) 426
Bse1I ACTGG 2 cut(s) 948, 1453
Bse3DI GCAATG 1 cut(s) 531
Bse8I GATNNNNATC 2 cut(s) 1239, 1249
BseCI ATCGAT 2 cut(s) 1045, 1243
BseDI CCNNGG 2 cut(s) 356, 1466
BseGI GGATG 2 cut(s) 229, 1027
BseJI GATNNNNATC 2 cut(s) 1239, 1249
BseLI CCNNNNNNNGG 1 cut(s) 1130
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 4 cut(s) 524, 689, 894, 1090
BseNI ACTGG 2 cut(s) 948, 1453
BseRI GAGGAG 4 cut(s) 126, 971, 1009, 1196
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 9 cut(s) 68, 523, 750, 1042, 1075, 1449, 1483, 1545, 1589
Bsh1236I CGCG 1 cut(s) 975
BshTI ACCGGT 1 cut(s) 426
BshVI ATCGAT 2 cut(s) 1045, 1243
BsiHKCI CYCGRG 1 cut(s) 1058
BsiSI CCGG 2 cut(s) 296, 427
BslI CCNNNNNNNGG 1 cut(s) 1130
BsmAI GTCTC 5 cut(s) 165, 224, 557, 678, 959
BsmI GAATGC 1 cut(s) 637
BsoBI CYCGRG 1 cut(s) 1058
Bsp1286I GDGCHC 1 cut(s) 212
BspCNI CTCAG 4 cut(s) 525, 688, 895, 1089
BspDI ATCGAT 2 cut(s) 1045, 1243
BspFNI CGCG 1 cut(s) 975
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 951, 1431
BspMI ACCTGC 1 cut(s) 1571
BspPI GGATC 3 cut(s) 1050, 1158, 1195
BspTI CTTAAG 4 cut(s) 503, 617, 689, 1096
BsrDI GCAATG 1 cut(s) 531
BsrFI RCCGGY 1 cut(s) 426
BsrI ACTGG 2 cut(s) 948, 1453
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 2 cut(s) 356, 1466
BssSI CACGAG 1 cut(s) 871
BssT1I CCWWGG 1 cut(s) 1466
Bst2BI CACGAG 1 cut(s) 871
Bst4CI ACNGT 5 cut(s) 347, 442, 882, 1141, 1610
Bst6I CTCTTC 8 cut(s) 144, 157, 222, 300, 390, 1002, 1257, 1406
BstAFI CTTAAG 4 cut(s) 503, 617, 689, 1096
BstAPI GCANNNNNTGC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 724
BstC8I GCNNGC 2 cut(s) 600, 1093
BstDEI CTNAG 9 cut(s) 533, 669, 675, 903, 1076, 1109, 1154, 1166, 1475
BstF5I GGATG 2 cut(s) 229, 1027
BstFNI CGCG 1 cut(s) 975
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 3 cut(s) 451, 730, 1663
BstMAI GTCTC 5 cut(s) 165, 224, 557, 678, 959
BstMWI GCNNNNNNNGC 2 cut(s) 62, 380
BstSFI CTRYAG 1 cut(s) 496
BstSLI GKGCMC 1 cut(s) 212
BstUI CGCG 1 cut(s) 975
BstV1I GCAGC 9 cut(s) 68, 523, 750, 1042, 1075, 1449, 1483, 1545, 1589
BstV2I GAAGAC 2 cut(s) 224, 1539
BstX2I RGATCY 3 cut(s) 732, 1150, 1377
BstYI RGATCY 3 cut(s) 732, 1150, 1377
Bsu15I ATCGAT 2 cut(s) 1045, 1243
BsuI GTATCC 2 cut(s) 158, 856
BsuTUI ATCGAT 2 cut(s) 1045, 1243
BtsCI GGATG 2 cut(s) 229, 1027
BtsIMutI CAGTG 4 cut(s) 1230, 1278, 1446, 1606
BveI ACCTGC 1 cut(s) 1571
Cac8I GCNNGC 2 cut(s) 600, 1093
CciI TCATGA 1 cut(s) 409
CfoI GCGC 3 cut(s) 451, 730, 1663
Cfr10I RCCGGY 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 122
ClaI ATCGAT 2 cut(s) 1045, 1243
CseI GACGC 1 cut(s) 1550
Csp6I GTAC 2 cut(s) 1050, 1158
CspAI ACCGGT 1 cut(s) 426
CviAII CATG 2 cut(s) 410, 1385
CviQI GTAC 2 cut(s) 1050, 1158
DdeI CTNAG 9 cut(s) 533, 669, 675, 903, 1076, 1109, 1154, 1166, 1475
DraIII CACNNNGTG 1 cut(s) 1552
Eam1104I CTCTTC 8 cut(s) 144, 157, 222, 300, 390, 1002, 1257, 1406
EarI CTCTTC 8 cut(s) 144, 157, 222, 300, 390, 1002, 1257, 1406
Eco130I CCWWGG 1 cut(s) 1466
Eco47I GGWCC 1 cut(s) 122
Eco47III AGCGCT 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 1161
Eco88I CYCGRG 1 cut(s) 1058
EcoT14I CCWWGG 1 cut(s) 1466
EcoT22I ATGCAT 1 cut(s) 1365
ErhI CCWWGG 1 cut(s) 1466
FaeI CATG 2 cut(s) 413, 1388
FalI AAGNNNNNCTT 2 cut(s) 1159, 1191
FatI CATG 2 cut(s) 409, 1384
FbaI TGATCA 2 cut(s) 406, 1275
Fnu4HI GCNGC 9 cut(s) 57, 512, 764, 1031, 1064, 1438, 1472, 1559, 1578
FokI GGATG 2 cut(s) 236, 1034
Fsp4HI GCNGC 9 cut(s) 57, 512, 764, 1031, 1064, 1438, 1472, 1559, 1578
FspBI CTAG 3 cut(s) 390, 1146, 1467
GlaI GCGC 3 cut(s) 450, 729, 1662
GluI GCNGC 9 cut(s) 57, 512, 764, 1031, 1064, 1438, 1472, 1559, 1578
GsuI CTGGAG 2 cut(s) 932, 965
HaeII RGCGCY 1 cut(s) 452
HapII CCGG 2 cut(s) 296, 427
HgaI GACGC 1 cut(s) 1550
HhaI GCGC 3 cut(s) 451, 730, 1663
Hin1II CATG 2 cut(s) 413, 1388
Hin6I GCGC 3 cut(s) 449, 728, 1661
HinP1I GCGC 3 cut(s) 449, 728, 1661
HincII GTYRAC 1 cut(s) 1312
HindII GTYRAC 1 cut(s) 1312
HinfI GANTC 5 cut(s) 914, 1265, 1283, 1301, 1543
HpaII CCGG 2 cut(s) 296, 427
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 1 cut(s) 1312
Hpy188I TCNGA 7 cut(s) 157, 364, 904, 1079, 1180, 1429, 1721
Hpy188III TCNNGA 6 cut(s) 269, 410, 473, 589, 800, 1540
Hpy8I GTNNAC 1 cut(s) 1312
Hpy99I CGWCG 1 cut(s) 1566
HpyAV CCTTC 3 cut(s) 249, 1012, 1720
HpyCH4III ACNGT 5 cut(s) 347, 442, 882, 1141, 1610
HpyCH4IV ACGT 1 cut(s) 723
HpyCH4V TGCA 7 cut(s) 524, 598, 766, 820, 1325, 1363, 1693
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 380
HpyF3I CTNAG 9 cut(s) 533, 669, 675, 903, 1076, 1109, 1154, 1166, 1475
HpySE526I ACGT 1 cut(s) 723
Hsp92II CATG 2 cut(s) 413, 1388
HspAI GCGC 3 cut(s) 449, 728, 1661
Ksp22I TGATCA 2 cut(s) 406, 1275
LmnI GCTCC 5 cut(s) 53, 379, 456, 508, 655
Lsp1109I GCAGC 9 cut(s) 68, 523, 750, 1042, 1075, 1449, 1483, 1545, 1589
LweI GCATC 5 cut(s) 807, 1350, 1500, 1545, 1648
MaeI CTAG 3 cut(s) 390, 1146, 1467
MaeII ACGT 1 cut(s) 723
MaeIII GTNAC 2 cut(s) 789, 983
MflI RGATCY 3 cut(s) 732, 1150, 1377
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 7 cut(s) 47, 117, 237, 577, 889, 934, 1649
MlyI GAGTC 3 cut(s) 923, 1274, 1277
MmeI TCCRAC 2 cut(s) 204, 633
Mph1103I ATGCAT 1 cut(s) 1365
MslI CAYNNNNRTG 2 cut(s) 414, 1553
MspCI CTTAAG 4 cut(s) 503, 617, 689, 1096
MspI CCGG 2 cut(s) 296, 427
Mva1269I GAATGC 1 cut(s) 637
MvnI CGCG 1 cut(s) 975
MwoI GCNNNNNNNGC 2 cut(s) 62, 380
NlaIII CATG 2 cut(s) 413, 1388
NlaIV GGNNCC 2 cut(s) 951, 1431
NsiI ATGCAT 1 cut(s) 1365
PaeR7I CTCGAG 1 cut(s) 1058
PagI TCATGA 1 cut(s) 409
PcsI WCGNNNNNNNCGW 2 cut(s) 1065, 1218
PctI GAATGC 1 cut(s) 637
PfeI GAWTC 2 cut(s) 1301, 1543
PinAI ACCGGT 1 cut(s) 426
PkrI GCNGC 9 cut(s) 58, 513, 765, 1032, 1065, 1439, 1473, 1560, 1579
PleI GAGTC 3 cut(s) 922, 1273, 1277
PpsI GAGTC 3 cut(s) 922, 1273, 1277
Ppu21I YACGTR 1 cut(s) 724
PspN4I GGNNCC 2 cut(s) 951, 1431
PspPI GGNCC 1 cut(s) 122
PspXI VCTCGAGB 1 cut(s) 1058
PsuI RGATCY 3 cut(s) 732, 1150, 1377
RsaI GTAC 2 cut(s) 1051, 1159
RsaNI GTAC 2 cut(s) 1050, 1158
RseI CAYNNNNRTG 2 cut(s) 414, 1553
SatI GCNGC 9 cut(s) 57, 512, 764, 1031, 1064, 1438, 1472, 1559, 1578
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 1 cut(s) 1159
SchI GAGTC 3 cut(s) 923, 1274, 1277
SduI GDGCHC 1 cut(s) 212
SfaNI GCATC 5 cut(s) 807, 1350, 1500, 1545, 1648
SfcI CTRYAG 1 cut(s) 496
Sfr274I CTCGAG 1 cut(s) 1058
SinI GGWCC 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 1058
SmiMI CAYNNNNRTG 2 cut(s) 414, 1553
SmlI CTYRAG 6 cut(s) 473, 503, 617, 689, 1058, 1096
SmoI CTYRAG 6 cut(s) 473, 503, 617, 689, 1058, 1096
Sse9I AATT 7 cut(s) 47, 117, 237, 577, 889, 934, 1649
SspMI CTAG 3 cut(s) 390, 1146, 1467
StyI CCWWGG 1 cut(s) 1466
TaaI ACNGT 5 cut(s) 347, 442, 882, 1141, 1610
TaiI ACGT 1 cut(s) 726
TaqI TCGA 5 cut(s) 1026, 1045, 1059, 1206, 1243
TasI AATT 7 cut(s) 47, 117, 237, 577, 889, 934, 1649
TatI WGTACW 2 cut(s) 1049, 1157
TfiI GAWTC 2 cut(s) 1301, 1543
TscAI CASTG 4 cut(s) 1237, 1285, 1453, 1613
TseI GCWGC 9 cut(s) 56, 511, 763, 1030, 1063, 1437, 1471, 1558, 1577
TspDTI ATGAA 6 cut(s) 240, 288, 1020, 1388, 1413, 1445
TspGWI ACGGA 4 cut(s) 227, 236, 443, 875
TspRI CASTG 4 cut(s) 1237, 1285, 1453, 1613
Vha464I CTTAAG 4 cut(s) 503, 617, 689, 1096
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 2 cut(s) 889, 934
XcmI CCANNNNNNNNNTGG 1 cut(s) 1127
XhoI CTCGAG 1 cut(s) 1058
XmaJI CCTAGG 1 cut(s) 1466
XspI CTAG 3 cut(s) 390, 1146, 1467
ZrmI AGTACT 1 cut(s) 1159
Zsp2I ATGCAT 1 cut(s) 1365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.