Rorug02G0367300

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009965
Physical Location & Seq
Reverse (-)
46771066 .. 46774530
3465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0367300.1

Sequence Viewer

Length: 543 bp
ATGGCCTCACTGCTATTGCTGCCAATTGTAGGTAAGTTCATTCTTCAAATGCTAAAATATAATTTCATAGTCCCACCGTTGTTCCTTCTTCAAAAAGATGAACGCTTGTATGTGTCTGATGCTTATGTTGTGATTGGAAATAAGTTATTTTGTATGTTTGCTTTTCACAATCATGATGCTAGTAATTTGGATAAACATGAGATAAATGGTCCGGATGATTGTCCTTTTGACATGAAATTGCCTGTTGCTGCAGAGATATCTCACCCTGCTAGAAAGCCTTATTGTTTGGCAGAGTTGACTGGGCAGCCTTCTTGTTCAACAGAGTTGACTGTGACTCGGGATGTGATAAACCATTCAGGATACTCTAATGGAAAGCTGCCTCACAAAGCTTGTCAAAGGAATGAGAAAGTTGCTATATCCCTAGGCCATGATAGTAAGGTGATGAACTTGATTGGCGATGTAAAAGGAAAAGTTGCTGTGATGGTAGATGATATGATCGACATTGCTGGATGGTGTGCATTACATGGTTTATACACCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.97

Weight (kDa)

6.43

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyl_synth PF14572 119 - 167 5.5e-06 Phosphoribosyl synthetase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52080 AT1G52080
fragaria_vesca FvH4_6g32630
malus_domestica MD09G1199900.v1.1
prunus_persica Prupe.3G056400_v2.0.a1 Prupe.3G056400_v2.0.a1
pyrus_communis pycom09g11710 pycom17g18980
rosa_chinensis RchiOBHm_Chr2g0141111
rosa_laevigata RLG00000019915
rosa_multiflora Rmu_sc0006556.1_g000011
rosa_roxburghii Rroxscaffold_2G00104200
rosa_rugosa Rorug02G0367200 Rorug02G0367300 Rorug02G0367400
rosa_samantha Rh2AG418200 Rh2BG428200 Rh2CG404600 Rh2DG438000
rosa_wichuraiana Rw0G019790 Rw2G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 3 cut(s) 47, 92, 318
AluBI AGCT 2 cut(s) 376, 389
AluI AGCT 2 cut(s) 376, 389
Ama87I CYCGRG 1 cut(s) 336
Aor13HI TCCGGA 1 cut(s) 211
AoxI GGCC 2 cut(s) 3, 424
ApeKI GCWGC 4 cut(s) 19, 248, 304, 376
AspA2I CCTAGG 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 254, 451
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 1 cut(s) 209
AvrII CCTAGG 1 cut(s) 421
BbvI GCAGC 4 cut(s) 6, 235, 316, 363
BccI CCATC 2 cut(s) 475, 504
BciVI GTATCC 1 cut(s) 353
BfaI CTAG 3 cut(s) 180, 270, 422
BfmI CTRYAG 1 cut(s) 249
BfuI GTATCC 1 cut(s) 353
BisI GCNGC 4 cut(s) 20, 249, 305, 377
BlnI CCTAGG 1 cut(s) 421
BlsI GCNGC 4 cut(s) 21, 250, 306, 378
Bme18I GGWCC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 209
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 109, 166
BmuI ACTGGG 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 421
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 3 cut(s) 220, 346, 515
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 501
BseNI ACTGG 1 cut(s) 304
BseXI GCAGC 4 cut(s) 6, 235, 316, 363
BshFI GGCC 2 cut(s) 5, 426
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 2 cut(s) 5, 426
BsoBI CYCGRG 1 cut(s) 336
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 1 cut(s) 495
BspANI GGCC 2 cut(s) 5, 426
BspEI TCCGGA 1 cut(s) 211
BspHI TCATGA 1 cut(s) 172
BspMAI CTGCAG 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 501
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 421
BssMI GATC 1 cut(s) 495
BssT1I CCWWGG 1 cut(s) 421
Bst4CI ACNGT 2 cut(s) 78, 331
BstF5I GGATG 3 cut(s) 220, 346, 515
BstKTI GATC 1 cut(s) 498
BstMBI GATC 1 cut(s) 495
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 4 cut(s) 6, 235, 316, 363
BsuI GTATCC 1 cut(s) 353
BsuRI GGCC 2 cut(s) 5, 426
BtgZI GCGATG 1 cut(s) 471
BtsCI GGATG 3 cut(s) 220, 346, 515
BtsI GCAGTG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 8
CciI TCATGA 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 209
CviAII CATG 5 cut(s) 173, 197, 232, 428, 524
CviJI RGCY 6 cut(s) 5, 277, 307, 376, 389, 426
CviKI_1 RGCY 6 cut(s) 5, 277, 307, 376, 389, 426
DpnI GATC 1 cut(s) 497
DpnII GATC 1 cut(s) 495
Eco130I CCWWGG 1 cut(s) 421
Eco32I GATATC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 336
EcoRV GATATC 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 5 cut(s) 176, 200, 235, 431, 527
FaqI GGGAC 1 cut(s) 56
FatI CATG 5 cut(s) 172, 196, 231, 427, 523
Fnu4HI GCNGC 4 cut(s) 20, 249, 305, 377
FokI GGATG 3 cut(s) 227, 353, 522
Fsp4HI GCNGC 4 cut(s) 20, 249, 305, 377
FspBI CTAG 3 cut(s) 180, 270, 422
GluI GCNGC 4 cut(s) 20, 249, 305, 377
HaeIII GGCC 2 cut(s) 5, 426
HapII CCGG 1 cut(s) 212
Hin1II CATG 5 cut(s) 176, 200, 235, 431, 527
HincII GTYRAC 2 cut(s) 297, 327
HindII GTYRAC 2 cut(s) 297, 327
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 1 cut(s) 334
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 254, 451
Hpy166II GTNNAC 2 cut(s) 297, 327
Hpy188I TCNGA 2 cut(s) 118, 542
Hpy188III TCNNGA 4 cut(s) 173, 212, 338, 357
Hpy8I GTNNAC 2 cut(s) 297, 327
HpyAV CCTTC 2 cut(s) 95, 318
HpyCH4III ACNGT 2 cut(s) 78, 331
HpyCH4V TGCA 2 cut(s) 251, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
Hsp92II CATG 5 cut(s) 176, 200, 235, 431, 527
Kpn2I TCCGGA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 495
LpnPI CCDG 6 cut(s) 225, 255, 279, 285, 342, 492
Lsp1109I GCAGC 4 cut(s) 6, 235, 316, 363
LweI GCATC 2 cut(s) 109, 166
MaeI CTAG 3 cut(s) 180, 270, 422
MaeIII GTNAC 1 cut(s) 331
MalI GATC 1 cut(s) 497
MboI GATC 1 cut(s) 495
MboII GAAGA 2 cut(s) 35, 80
MfeI CAATTG 1 cut(s) 24
MluCI AATT 4 cut(s) 24, 61, 184, 236
MlyI GAGTC 1 cut(s) 328
MnlI CCTC 2 cut(s) 16, 390
MroI TCCGGA 1 cut(s) 211
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeII GATC 1 cut(s) 495
NlaIII CATG 5 cut(s) 176, 200, 235, 431, 527
NmuCI GTSAC 1 cut(s) 331
PagI TCATGA 1 cut(s) 172
PkrI GCNGC 4 cut(s) 21, 250, 306, 378
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 209
PstI CTGCAG 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 171
SatI GCNGC 4 cut(s) 20, 249, 305, 377
Sau3AI GATC 1 cut(s) 495
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 1 cut(s) 328
SetI ASST 4 cut(s) 34, 378, 391, 441
SfaNI GCATC 2 cut(s) 109, 166
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 4 cut(s) 24, 61, 184, 236
SspMI CTAG 3 cut(s) 180, 270, 422
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 2 cut(s) 78, 331
TaqI TCGA 1 cut(s) 498
TasI AATT 4 cut(s) 24, 61, 184, 236
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 4 cut(s) 19, 248, 304, 376
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 5 cut(s) 28, 55, 114, 248, 458
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 421
XspI CTAG 3 cut(s) 180, 270, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.