Rorug02G0367200

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009965
Physical Location & Seq
Forward (+)
46746478 .. 46748448
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0367200.1

Sequence Viewer

Length: 1677 bp
ATGTCTTCTCTCCAACCAACATTCTCTTCCAAATCCAGTTCCAACTTCAATGAGCTTCAATGGGTGATTCAAATACGAAAAACCCTAGAGGAGGAGCTCGAGGAAGATGGTGAAATCCTTGTCTCCATTTTCAACGTCCCCAAATCCCTCTTGGCTAGTGACCCGGAATCGTACACCCCTCAAGAGGTTGCAATCGGTCCTTACCATTATTGGCGTTCGGAGCTGTATGAGATGGAGAGGTACAAAGTGGCCGCGGCTAAACGAACCCAAAAGCAGCTCCAAACCCTCAAATTCCAGCACCTTGTTAACCAATTGACGAGGTTCGAGCCGAGGATTCGTGCTTGTTACCACAAGTACTTGGAGTTTAATGGTGAGACTTTGGGGTGGATGATGGCCATTGATGCTTCGTTTTTCCTCGAAATCCTCCAAGTCTATGCGGTCCAAGATGGGAAGACTTTGACAAGAGTTTCTTCAAGGATGGCGCATTTGGTTGACCATGCAGGAAAGAAGTCGGCGCATCACGCAATCCTTAGGGACTTGGTGATGCTTGAGAATCAAATCCCATTGTTTGTGTTGAGAAAAGTGTTGGAATTTCAGTTTCCCACGTTGGAATGCGCCGACGAGATGCTTCTTTCCATGTTTATGGGATTGTGCAAAGAGCTCTCACCATTCAAGATGAATGATGAGGACTTGCAGAAGATCCAAGTCTCCAGTTGTTGTCACTTGCTAGACTTTTTGTACCACATGATCACCCCCAAGTTAGAAGCTGGGCCGTCGGAAATCACAGAAGCCGAGGGTGGGGAGGCCACACCACACAAGGGAAAATCATCAGATAACTCGAATTTCGTCAAACAATTTCTGGAGGAGGTATGGAAGCTGCTTTCGAAGTTGAATAAAGGTCCAATACGTCTTCTGAAAAAAATTCTAATATCTGGACCCGTAAAGGTGATATTCAAATTGCCTTGGACTATCCTCTCCAACCTTCCTGGATTTGCAATTTTGAAAAAACCTCTCGAGTCCTTATTTTCCTCCCAAGACAAAGAAGCAGTCAAACCCGAAGATGAAAATTCGAGCAGTGGCATTAGTAAACCGCCCTTGATAGAGGAGATCACTATTCCATCTGTCTCTGGTCTGTCAAAATCCGGTGTCAAGTTCTTGCCTGCAAATAGCATTTCGAGCATCTCTTTCGATGCTAAGACTTGCTCATTTTACCTCCCGAGTACTAGCTTAGATGGGAACACAGAGGTGATCCTGAGAAACTTGGTGGCCTACGAAGCATCAACTGCATCGGGGCCATTGGTTTTTACTCGCTACACCGAGTTGATGAACGGGATCATAGACACCGAGGAGGACGCCAAGTTGCTTAGAGAGAAAGGTATCATCTTGAACCGTTTGAAGAGTGATGAAGAAGTGGCAAAGCTGTTCAATGGCATGAGCAAGTCCATTAGATTGACCAAAGTGCCCTTCTTGGATAAGGCAATAGAAGATGCCAACAAGTATTACAATGGTAGATGGAAGGTGAAGATGAGGAAGTTTTTTAAAACTTATGTGATTGGTTGCTGGCCAGTTCTGGCTTTGCTCGCTGCCATTTTGCTCCTGCTCTTGATGACATTGCAAGCATTTTGCTCAGTATACAGCTGCAGTCGCATATTTCATATCAACACTACCACAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

558

Amino Acids

63.22

Weight (kDa)

7.93

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 43 - 535 3.3e-104 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52080 AT1G52080
fragaria_vesca FvH4_6g32630
malus_domestica MD09G1199900.v1.1
prunus_persica Prupe.3G056400_v2.0.a1 Prupe.3G056400_v2.0.a1
pyrus_communis pycom09g11710 pycom17g18980
rosa_chinensis RchiOBHm_Chr2g0141111
rosa_laevigata RLG00000019915
rosa_multiflora Rmu_sc0006556.1_g000011
rosa_roxburghii Rroxscaffold_2G00104200
rosa_rugosa Rorug02G0367200 Rorug02G0367300 Rorug02G0367400
rosa_samantha Rh2AG418200 Rh2BG428200 Rh2CG404600 Rh2DG438000
rosa_wichuraiana Rw0G019790 Rw2G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1632
AccII CGCG 1 cut(s) 254
AciI CCGC 4 cut(s) 252, 254, 437, 1091
AclWI GGATC 3 cut(s) 694, 1243, 1340
AcoI YGGCCR 3 cut(s) 249, 393, 1562
AcsI RAATTY 5 cut(s) 290, 590, 841, 921, 1066
AcyI GRCGYC 1 cut(s) 1353
AfaI GTAC 5 cut(s) 173, 242, 356, 740, 1222
AfiI CCNNNNNNNGG 4 cut(s) 91, 184, 798, 818
AjnI CCWGG 1 cut(s) 985
AjuI GAANNNNNNNTTGG 4 cut(s) 10, 42, 1448, 1480
AleI CACNNNNGTG 1 cut(s) 1244
Alw21I GWGCWC 2 cut(s) 99, 663
Alw26I GTCTC 4 cut(s) 127, 368, 712, 1129
AlwI GGATC 3 cut(s) 694, 1243, 1340
Ama87I CYCGRG 3 cut(s) 98, 1013, 1216
AoxI GGCC 7 cut(s) 249, 393, 770, 804, 1266, 1292, 1562
ApeKI GCWGC 4 cut(s) 274, 877, 1583, 1638
ApoI RAATTY 5 cut(s) 290, 590, 841, 921, 1066
ArsI GACNNNNNNTTYG 2 cut(s) 1032, 1064
AspLEI GCGC 3 cut(s) 484, 517, 617
AspS9I GGNCC 6 cut(s) 197, 439, 770, 899, 935, 1292
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 9 cut(s) 76, 122, 383, 553, 657, 742, 958, 1258, 1531
AsuII TTCGAA 1 cut(s) 884
AvaI CYCGRG 3 cut(s) 98, 1013, 1216
AvaII GGWCC 4 cut(s) 197, 439, 899, 935
AxyI CCTNAGG 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 1464
BalI TGGCCA 2 cut(s) 395, 1564
BanII GRGCYC 2 cut(s) 99, 663
BbsI GAAGAC 2 cut(s) 458, 902
Bbv12I GWGCWC 2 cut(s) 99, 663
BbvI GCAGC 4 cut(s) 286, 864, 1570, 1625
BccI CCATC 8 cut(s) 101, 226, 385, 440, 472, 1126, 1226, 1506
BceAI ACGGC 1 cut(s) 757
BcgI CGANNNNNNTGC 2 cut(s) 1168, 1202
BciT130I CCWGG 1 cut(s) 987
BclI TGATCA 1 cut(s) 747
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 4 cut(s) 127, 368, 712, 1129
BfaI CTAG 4 cut(s) 86, 156, 728, 1224
BfmI CTRYAG 1 cut(s) 1639
BisI GCNGC 6 cut(s) 252, 255, 275, 878, 1584, 1639
BlsI GCNGC 6 cut(s) 253, 256, 276, 879, 1585, 1640
BmcAI AGTACT 2 cut(s) 356, 1222
Bme1390I CCNGG 2 cut(s) 164, 987
Bme18I GGWCC 4 cut(s) 197, 439, 899, 935
BmeT110I CYCGRG 3 cut(s) 98, 1013, 1216
BmgT120I GGNCC 6 cut(s) 197, 439, 770, 899, 935, 1292
BmiI GGNNCC 2 cut(s) 937, 1293
BmrFI CCNGG 2 cut(s) 164, 987
BmsI GCATC 9 cut(s) 391, 526, 534, 615, 1180, 1188, 1286, 1295, 1477
BpiI GAAGAC 2 cut(s) 458, 902
BpmI CTGGAG 2 cut(s) 694, 881
Bpu14I TTCGAA 1 cut(s) 884
BpuEI CTTGAG 2 cut(s) 165, 569
BpuMI CCSGG 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 1353
BsaJI CCNNGG 5 cut(s) 252, 329, 792, 962, 1344
BsaWI WCCGGW 1 cut(s) 1142
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 184, 798, 818
Bse1I ACTGG 3 cut(s) 36, 711, 1565
Bse21I CCTNAGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 1610
BseBI CCWGG 1 cut(s) 987
BseDI CCNNGG 5 cut(s) 252, 329, 792, 962, 1344
BseGI GGATG 2 cut(s) 393, 483
BseLI CCNNNNNNNGG 4 cut(s) 91, 184, 798, 818
BseMI GCAATG 1 cut(s) 1610
BseMII CTCAG 2 cut(s) 1244, 1641
BseNI ACTGG 3 cut(s) 36, 711, 1565
BseRI GAGGAG 5 cut(s) 104, 107, 878, 1118, 1361
BseSI GKGCMC 1 cut(s) 1464
BseXI GCAGC 4 cut(s) 286, 864, 1570, 1625
BseYI CCCAGC 1 cut(s) 767
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 7 cut(s) 251, 395, 772, 806, 1268, 1294, 1564
BsiHKAI GWGCWC 2 cut(s) 99, 663
BsiHKCI CYCGRG 3 cut(s) 98, 1013, 1216
BsiSI CCGG 2 cut(s) 164, 1143
BslFI GGGAC 2 cut(s) 122, 548
BslI CCNNNNNNNGG 4 cut(s) 91, 184, 798, 818
BsmAI GTCTC 4 cut(s) 127, 368, 712, 1129
BsmFI GGGAC 2 cut(s) 122, 548
BsmI GAATGC 1 cut(s) 617
BsnI GGCC 7 cut(s) 251, 395, 772, 806, 1268, 1294, 1564
BsoBI CYCGRG 3 cut(s) 98, 1013, 1216
Bsp119I TTCGAA 1 cut(s) 884
Bsp1286I GDGCHC 3 cut(s) 99, 663, 1464
Bsp143I GATC 5 cut(s) 699, 747, 1107, 1248, 1332
BspACI CCGC 4 cut(s) 252, 254, 437, 1091
BspANI GGCC 7 cut(s) 251, 395, 772, 806, 1268, 1294, 1564
BspCNI CTCAG 2 cut(s) 1245, 1640
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 2 cut(s) 937, 1293
BspMAI CTGCAG 1 cut(s) 1643
BspPI GGATC 3 cut(s) 694, 1243, 1340
BspT104I TTCGAA 1 cut(s) 884
BsrDI GCAATG 1 cut(s) 1610
BsrI ACTGG 3 cut(s) 36, 711, 1565
BssECI CCNNGG 5 cut(s) 252, 329, 792, 962, 1344
BssMI GATC 5 cut(s) 699, 747, 1107, 1248, 1332
BssNAI GTATAC 1 cut(s) 1633
BssNI GRCGYC 1 cut(s) 1353
BssT1I CCWWGG 1 cut(s) 962
Bst1107I GTATAC 1 cut(s) 1633
Bst2UI CCWGG 1 cut(s) 987
Bst4CI ACNGT 1 cut(s) 1391
Bst6I CTCTTC 2 cut(s) 31, 1391
BstACI GRCGYC 1 cut(s) 1353
BstAPI GCANNNNNTGC 1 cut(s) 1283
BstBI TTCGAA 1 cut(s) 884
BstC8I GCNNGC 4 cut(s) 1161, 1562, 1581, 1617
BstDEI CTNAG 7 cut(s) 530, 1194, 1228, 1253, 1364, 1627, 1674
BstDSI CCRYGG 1 cut(s) 252
BstENI CCTNNNNNAGG 1 cut(s) 89
BstF5I GGATG 2 cut(s) 393, 483
BstFNI CGCG 1 cut(s) 254
BstHHI GCGC 3 cut(s) 484, 517, 617
BstKTI GATC 5 cut(s) 702, 750, 1110, 1251, 1335
BstMAI GTCTC 4 cut(s) 127, 368, 712, 1129
BstMBI GATC 5 cut(s) 699, 747, 1107, 1248, 1332
BstMWI GCNNNNNNNGC 8 cut(s) 220, 401, 521, 1176, 1274, 1283, 1580, 1644
BstNI CCWGG 1 cut(s) 987
BstSCI CCNGG 2 cut(s) 162, 985
BstSFI CTRYAG 1 cut(s) 1639
BstSLI GKGCMC 1 cut(s) 1464
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 4 cut(s) 286, 864, 1570, 1625
BstV2I GAAGAC 2 cut(s) 458, 902
BstX2I RGATCY 1 cut(s) 699
BstXI CCANNNNNNTGG 1 cut(s) 643
BstYI RGATCY 1 cut(s) 699
BstZ17I GTATAC 1 cut(s) 1633
Bsu36I CCTNAGG 1 cut(s) 530
BsuRI GGCC 7 cut(s) 251, 395, 772, 806, 1268, 1294, 1564
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 393, 483
BtsI GCAGTG 1 cut(s) 1081
BtsIMutI CAGTG 1 cut(s) 1081
Cac8I GCNNGC 4 cut(s) 1161, 1562, 1581, 1617
CfoI GCGC 3 cut(s) 484, 517, 617
Cfr13I GGNCC 6 cut(s) 197, 439, 770, 899, 935, 1292
Cfr42I CCGCGG 1 cut(s) 255
CseI GACGC 1 cut(s) 1361
Csp6I GTAC 5 cut(s) 172, 241, 355, 739, 1221
CviAII CATG 4 cut(s) 497, 637, 745, 1432
CviQI GTAC 5 cut(s) 172, 241, 355, 739, 1221
DdeI CTNAG 7 cut(s) 530, 1194, 1228, 1253, 1364, 1627, 1674
DpnI GATC 5 cut(s) 701, 749, 1109, 1250, 1334
DpnII GATC 5 cut(s) 699, 747, 1107, 1248, 1332
DraI TTTAAA 1 cut(s) 1540
EaeI YGGCCR 3 cut(s) 249, 393, 1562
Eam1104I CTCTTC 2 cut(s) 31, 1391
EarI CTCTTC 2 cut(s) 31, 1391
Ecl136II GAGCTC 2 cut(s) 97, 661
Eco130I CCWWGG 1 cut(s) 962
Eco24I GRGCYC 2 cut(s) 99, 663
Eco47I GGWCC 4 cut(s) 197, 439, 899, 935
Eco53kI GAGCTC 2 cut(s) 97, 661
Eco81I CCTNAGG 1 cut(s) 530
Eco88I CYCGRG 3 cut(s) 98, 1013, 1216
EcoICRI GAGCTC 2 cut(s) 97, 661
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 985
EcoT14I CCWWGG 1 cut(s) 962
EcoT38I GRGCYC 2 cut(s) 99, 663
ErhI CCWWGG 1 cut(s) 962
FaeI CATG 4 cut(s) 500, 640, 748, 1435
FalI AAGNNNNNCTT 2 cut(s) 454, 486
FaqI GGGAC 2 cut(s) 122, 548
FatI CATG 4 cut(s) 496, 636, 744, 1431
FbaI TGATCA 1 cut(s) 747
FblI GTMKAC 1 cut(s) 1632
Fnu4HI GCNGC 6 cut(s) 252, 255, 275, 878, 1584, 1639
FokI GGATG 2 cut(s) 400, 490
FriOI GRGCYC 2 cut(s) 99, 663
Fsp4HI GCNGC 6 cut(s) 252, 255, 275, 878, 1584, 1639
FspBI CTAG 4 cut(s) 86, 156, 728, 1224
GlaI GCGC 3 cut(s) 483, 516, 616
GluI GCNGC 6 cut(s) 252, 255, 275, 878, 1584, 1639
GsaI CCCAGC 1 cut(s) 771
GsuI CTGGAG 2 cut(s) 694, 881
HaeIII GGCC 7 cut(s) 251, 395, 772, 806, 1268, 1294, 1564
HapII CCGG 2 cut(s) 164, 1143
HgaI GACGC 1 cut(s) 1361
HhaI GCGC 3 cut(s) 484, 517, 617
Hin1I GRCGYC 1 cut(s) 1353
Hin1II CATG 4 cut(s) 500, 640, 748, 1435
Hin6I GCGC 3 cut(s) 482, 515, 615
HinP1I GCGC 3 cut(s) 482, 515, 615
HincII GTYRAC 2 cut(s) 307, 493
HindII GTYRAC 2 cut(s) 307, 493
HinfI GANTC 5 cut(s) 67, 167, 334, 553, 1016
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 2 cut(s) 164, 1143
HphI GGTGA 9 cut(s) 76, 122, 383, 553, 657, 742, 958, 1258, 1531
Hpy166II GTNNAC 5 cut(s) 174, 307, 493, 1088, 1633
Hpy188I TCNGA 4 cut(s) 220, 778, 832, 915
Hpy188III TCNNGA 9 cut(s) 182, 673, 860, 933, 1013, 1216, 1252, 1384, 1603
Hpy8I GTNNAC 5 cut(s) 174, 307, 493, 1088, 1633
Hpy99I CGWCG 2 cut(s) 623, 778
HpyAV CCTTC 3 cut(s) 992, 1474, 1510
HpyCH4III ACNGT 1 cut(s) 1391
HpyCH4IV ACGT 3 cut(s) 135, 605, 907
HpyCH4V TGCA 9 cut(s) 191, 500, 654, 694, 995, 1163, 1286, 1615, 1641
HpyF10VI GCNNNNNNNGC 8 cut(s) 220, 401, 521, 1176, 1274, 1283, 1580, 1644
HpyF3I CTNAG 7 cut(s) 530, 1194, 1228, 1253, 1364, 1627, 1674
HpySE526I ACGT 3 cut(s) 135, 605, 907
Hsp92I GRCGYC 1 cut(s) 1353
Hsp92II CATG 4 cut(s) 500, 640, 748, 1435
HspAI GCGC 3 cut(s) 482, 515, 615
Ksp22I TGATCA 1 cut(s) 747
KspAI GTTAAC 1 cut(s) 307
KspI CCGCGG 1 cut(s) 255
Kzo9I GATC 5 cut(s) 699, 747, 1107, 1248, 1332
LmnI GCTCC 4 cut(s) 94, 220, 282, 1599
Lsp1109I GCAGC 4 cut(s) 286, 864, 1570, 1625
LweI GCATC 9 cut(s) 391, 526, 534, 615, 1180, 1188, 1286, 1295, 1477
MaeI CTAG 4 cut(s) 86, 156, 728, 1224
MaeII ACGT 3 cut(s) 135, 605, 907
MaeIII GTNAC 3 cut(s) 158, 344, 719
MalI GATC 5 cut(s) 701, 749, 1109, 1250, 1334
MboI GATC 5 cut(s) 699, 747, 1107, 1248, 1332
MfeI CAATTG 1 cut(s) 311
MflI RGATCY 1 cut(s) 699
MhlI GDGCHC 3 cut(s) 99, 663, 1464
MlsI TGGCCA 2 cut(s) 395, 1564
MluCI AATT 9 cut(s) 290, 311, 590, 841, 854, 921, 956, 996, 1066
MluNI TGGCCA 2 cut(s) 395, 1564
MlyI GAGTC 1 cut(s) 1025
MmeI TCCRAC 6 cut(s) 37, 66, 567, 588, 756, 1002
Mox20I TGGCCA 2 cut(s) 395, 1564
MscI TGGCCA 2 cut(s) 395, 1564
MseI TTAA 3 cut(s) 306, 366, 1539
MslI CAYNNNNRTG 2 cut(s) 641, 1244
Msp20I TGGCCA 2 cut(s) 395, 1564
MspA1I CMGCKG 2 cut(s) 254, 1638
MspI CCGG 2 cut(s) 164, 1143
MspR9I CCNGG 2 cut(s) 164, 987
MunI CAATTG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 617
MvaI CCWGG 1 cut(s) 987
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 8 cut(s) 220, 401, 521, 1176, 1274, 1283, 1580, 1644
NciI CCSGG 1 cut(s) 164
NdeII GATC 5 cut(s) 699, 747, 1107, 1248, 1332
NlaIII CATG 4 cut(s) 500, 640, 748, 1435
NlaIV GGNNCC 2 cut(s) 937, 1293
NmeAIII GCCGAG 2 cut(s) 354, 817
NmuCI GTSAC 2 cut(s) 158, 719
NspV TTCGAA 1 cut(s) 884
OliI CACNNNNGTG 1 cut(s) 1244
PaeR7I CTCGAG 2 cut(s) 98, 1013
PctI GAATGC 1 cut(s) 617
PfeI GAWTC 4 cut(s) 67, 167, 334, 553
PfoI TCCNGGA 1 cut(s) 985
PkrI GCNGC 6 cut(s) 253, 256, 276, 879, 1585, 1640
PleI GAGTC 1 cut(s) 1024
PpsI GAGTC 1 cut(s) 1024
Psp124BI GAGCTC 2 cut(s) 99, 663
Psp6I CCWGG 1 cut(s) 985
PspFI CCCAGC 1 cut(s) 767
PspGI CCWGG 1 cut(s) 985
PspN4I GGNNCC 2 cut(s) 937, 1293
PspPI GGNCC 6 cut(s) 197, 439, 770, 899, 935, 1292
PspXI VCTCGAGB 1 cut(s) 98
PstI CTGCAG 1 cut(s) 1643
PsuI RGATCY 1 cut(s) 699
PvuII CAGCTG 1 cut(s) 1638
RsaI GTAC 5 cut(s) 173, 242, 356, 740, 1222
RsaNI GTAC 5 cut(s) 172, 241, 355, 739, 1221
RseI CAYNNNNRTG 2 cut(s) 641, 1244
SacI GAGCTC 2 cut(s) 99, 663
SacII CCGCGG 1 cut(s) 255
SaqAI TTAA 3 cut(s) 306, 366, 1539
SatI GCNGC 6 cut(s) 252, 255, 275, 878, 1584, 1639
Sau3AI GATC 5 cut(s) 699, 747, 1107, 1248, 1332
Sau96I GGNCC 6 cut(s) 197, 439, 770, 899, 935, 1292
ScaI AGTACT 2 cut(s) 356, 1222
SchI GAGTC 1 cut(s) 1025
ScrFI CCNGG 2 cut(s) 164, 987
SduI GDGCHC 3 cut(s) 99, 663, 1464
SfaNI GCATC 9 cut(s) 391, 526, 534, 615, 1180, 1188, 1286, 1295, 1477
SfcI CTRYAG 1 cut(s) 1639
Sfr274I CTCGAG 2 cut(s) 98, 1013
Sfr303I CCGCGG 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 884
SgrBI CCGCGG 1 cut(s) 255
SinI GGWCC 4 cut(s) 197, 439, 899, 935
SlaI CTCGAG 2 cut(s) 98, 1013
SmiMI CAYNNNNRTG 2 cut(s) 641, 1244
SmlI CTYRAG 4 cut(s) 98, 180, 548, 1013
SmoI CTYRAG 4 cut(s) 98, 180, 548, 1013
Sse9I AATT 9 cut(s) 290, 311, 590, 841, 854, 921, 956, 996, 1066
SsiI CCGC 4 cut(s) 252, 254, 437, 1091
SspMI CTAG 4 cut(s) 86, 156, 728, 1224
SstI GAGCTC 2 cut(s) 99, 663
StyD4I CCNGG 2 cut(s) 162, 985
StyI CCWWGG 1 cut(s) 962
TaaI ACNGT 1 cut(s) 1391
TaiI ACGT 3 cut(s) 138, 608, 910
TaqI TCGA 9 cut(s) 99, 324, 417, 839, 884, 1014, 1070, 1175, 1188
TaqII GACCGA 1 cut(s) 185
TasI AATT 9 cut(s) 290, 311, 590, 841, 854, 921, 956, 996, 1066
TatI WGTACW 2 cut(s) 354, 1220
TauI GCSGC 2 cut(s) 254, 257
TfiI GAWTC 4 cut(s) 67, 167, 334, 553
Tru1I TTAA 3 cut(s) 306, 366, 1539
Tru9I TTAA 3 cut(s) 306, 366, 1539
TscAI CASTG 1 cut(s) 1081
TseFI GTSAC 2 cut(s) 158, 719
TseI GCWGC 4 cut(s) 274, 877, 1583, 1638
Tsp45I GTSAC 2 cut(s) 158, 719
TspDTI ATGAA 5 cut(s) 692, 1077, 1340, 1419, 1643
TspRI CASTG 1 cut(s) 1081
VpaK11BI GGWCC 4 cut(s) 197, 439, 899, 935
XagI CCTNNNNNAGG 1 cut(s) 89
XapI RAATTY 5 cut(s) 290, 590, 841, 921, 1066
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XhoI CTCGAG 2 cut(s) 98, 1013
XmiI GTMKAC 1 cut(s) 1632
XspI CTAG 4 cut(s) 86, 156, 728, 1224
ZrmI AGTACT 2 cut(s) 356, 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.