pycom17g18980

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0009965
Physical Location & Seq
Reverse (-)
16504305 .. 16505983
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g18980.5

Sequence Viewer

Length: 1236 bp
ATGTGCACGCCGAAGGTCTGTAATGGTAATTGCACAACCAGTGTTTCTCTGTGCAGCAAACACGGTGGAGACAAAGATGGGTTACTCTTACCATTGTTCAATGAGCTTGTGGAGGAATTTGACTTTGGTGCTGCAAATCCTGGGTTTCCTCCAAGGAAAAATGTCGAAACTCCTAGGTCAGATGTAGACACTCCCAAAGCATATAGATCAGATTTGCTCGAGTACTATGGCCTTAAAGAGCAGGAAACTGCTGTTATGGAGCTCCAAAACCAGTTGAAGATCAATAGTATGGAGACTAAGCTTTTCTGTCTTAAGATTGAGTCCTTAGAGGCAGATAACCGAAGACTGGAGTCACAAGTGGCTGATCATGCAAAAGTGGTGGCTAAGCTTGAGGCTAATAGGGCAAAAATTAAGATACCGAAAAAAAAACTCAGATTCGAAAAGTTTCACGATACCGAAACTGCTGATAGTAATTCAGATATTCAATTGAAGCTGAGAAGGATGAAAGATTTGGAAGGTGAAGCTGAAGCGTTGAGAAAGTCTAATCTGAATTTGCAACTCCATAACTCTGAATTAACTTTGTTGCAGGCAAAAGCAATGAAGGAAATGAGTAAGTGTTTAAGACAAGAAAATGATGATTTGATAAAGGAAATTCAGCAACTCCAAGTTGATCGATGTTCTGATGTCGAAGAATTAGTTTACCTCTGGTGGATAAATGCTTGCTTACGCTACGAGCTGCGGAATTATCAGCCTCCAACTGGTAAAACAGTGGCAAGGGACTTGAGTAAATCATTAAGCCCGACATCAGAGGAGAAAGCCAAGCAACTAATAGTTGAATATGCAAACACAGAAGGATTCGGGGATAAGAACATTGATTTTGACTCTGATCAATGGTCATCCTCCCAAGCTTCCTTGTTCACAGATTCCCCCGAGTTTGATGACTTTTCTGTCGACAATTCATCTGCTACAAAAACAAACACGTCGAGTAAAACCAAATTCTTCAGCAAGCTTAGGAGACTCGTATGGGGAAAAGACACATTCTCACAACCAAGCTGCGATACCGAGGATGTACGCAGCATTCAAAGGCACAGTGACGTGGGATACCCCTCCGGGTATAAGACCTTATGCAGGGAAGGTTCTGTGGAGAAAGCTGAGTTGGTGAAGTATGCAGAAGCTTTGGTAAACTCCCGTGGCGTCACGCCCAAGGTACACAGAAAATCTGCATCATCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

412

Amino Acids

46.54

Weight (kDa)

6.18

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52080 AT1G52080
fragaria_vesca FvH4_6g32630
malus_domestica MD09G1199900.v1.1
prunus_persica Prupe.3G056400_v2.0.a1 Prupe.3G056400_v2.0.a1
pyrus_communis pycom09g11710 pycom17g18980
rosa_chinensis RchiOBHm_Chr2g0141111
rosa_laevigata RLG00000019915
rosa_multiflora Rmu_sc0006556.1_g000011
rosa_roxburghii Rroxscaffold_2G00104200
rosa_rugosa Rorug02G0367200 Rorug02G0367300 Rorug02G0367400
rosa_samantha Rh2AG418200 Rh2BG428200 Rh2CG404600 Rh2DG438000
rosa_wichuraiana Rw0G019790 Rw2G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 947
AccI GTMKAC 2 cut(s) 186, 951
AciI CCGC 1 cut(s) 739
AcsI RAATTY 4 cut(s) 116, 550, 651, 995
AcuI CTGAAG 2 cut(s) 546, 985
AcyI GRCGYC 1 cut(s) 1194
AfaI GTAC 3 cut(s) 224, 1071, 1209
AfiI CCNNNNNNNGG 3 cut(s) 346, 758, 1128
AflII CTTAAG 1 cut(s) 311
AflIII ACRYGT 1 cut(s) 978
AgsI TTSAA 6 cut(s) 100, 277, 485, 490, 836, 1082
AjiI CACGTC 2 cut(s) 981, 1096
AjnI CCWGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 4 cut(s) 108, 140, 1139, 1171
Alw21I GWGCWC 2 cut(s) 8, 264
Alw26I GTCTC 3 cut(s) 63, 287, 1009
Alw44I GTGCAC 1 cut(s) 4
Ama87I CYCGRG 2 cut(s) 218, 929
AoxI GGCC 1 cut(s) 229
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 5 cut(s) 54, 131, 736, 1053, 1074
ApoI RAATTY 4 cut(s) 116, 550, 651, 995
Asp700I GAANNNNTTC 1 cut(s) 444
AspA2I CCTAGG 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 1111
AsuHPI GGTGA 2 cut(s) 530, 1171
AsuII TTCGAA 1 cut(s) 438
AvaI CYCGRG 2 cut(s) 218, 929
AvrII CCTAGG 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 349
Bbv12I GWGCWC 2 cut(s) 8, 264
BbvI GCAGC 5 cut(s) 66, 118, 723, 1040, 1086
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 141
BciVI GTATCC 1 cut(s) 1094
BclI TGATCA 2 cut(s) 364, 886
BcnI CCSGG 1 cut(s) 1111
BcoDI GTCTC 3 cut(s) 63, 287, 1009
BfaI CTAG 1 cut(s) 174
BfrI CTTAAG 1 cut(s) 311
BfuI GTATCC 1 cut(s) 1094
BisI GCNGC 5 cut(s) 55, 132, 737, 1054, 1075
BlnI CCTAGG 1 cut(s) 173
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 5 cut(s) 56, 133, 738, 1055, 1076
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 141, 1111
BmeT110I CYCGRG 2 cut(s) 218, 929
BmgBI CACGTC 2 cut(s) 981, 1096
BmrFI CCNGG 2 cut(s) 141, 1111
BmsI GCATC 1 cut(s) 1232
BoxI GACNNNNGTC 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 349
BpmI CTGGAG 1 cut(s) 368
Bpu10I CCTNAGC 1 cut(s) 1010
Bpu1102I GCTNAGC 1 cut(s) 384
Bpu14I TTCGAA 1 cut(s) 438
BpuEI CTTGAG 2 cut(s) 410, 802
BpuMI CCSGG 1 cut(s) 1111
Bsa29I ATCGAT 1 cut(s) 673
BsaHI GRCGYC 1 cut(s) 1194
BsaJI CCNNGG 6 cut(s) 140, 152, 173, 1062, 1189, 1203
Bsc4I CCNNNNNNNGG 3 cut(s) 346, 758, 1128
Bse1I ACTGG 4 cut(s) 39, 271, 351, 763
Bse3DI GCAATG 1 cut(s) 603
BseBI CCWGG 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 673
BseDI CCNNGG 6 cut(s) 140, 152, 173, 1062, 1189, 1203
BseGI GGATG 3 cut(s) 507, 896, 1072
BseLI CCNNNNNNNGG 3 cut(s) 346, 758, 1128
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 3 cut(s) 445, 485, 1143
BseNI ACTGG 4 cut(s) 39, 271, 351, 763
BseRI GAGGAG 1 cut(s) 824
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 5 cut(s) 66, 118, 723, 1040, 1086
BsgI GTGCAG 1 cut(s) 73
BshFI GGCC 1 cut(s) 231
BshVI ATCGAT 1 cut(s) 673
BsiHKAI GWGCWC 2 cut(s) 8, 264
BsiHKCI CYCGRG 2 cut(s) 218, 929
BsiSI CCGG 1 cut(s) 1110
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 3 cut(s) 346, 758, 1128
BsmAI GTCTC 3 cut(s) 63, 287, 1009
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 1 cut(s) 1077
BsnI GGCC 1 cut(s) 231
BsoBI CYCGRG 2 cut(s) 218, 929
Bsp119I TTCGAA 1 cut(s) 438
Bsp1286I GDGCHC 2 cut(s) 8, 264
Bsp143I GATC 5 cut(s) 206, 279, 364, 670, 886
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 1 cut(s) 739
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 3 cut(s) 444, 486, 1144
BspDI ATCGAT 1 cut(s) 673
BspT104I TTCGAA 1 cut(s) 438
BspTI CTTAAG 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 4 cut(s) 39, 271, 351, 763
BssECI CCNNGG 6 cut(s) 140, 152, 173, 1062, 1189, 1203
BssMI GATC 5 cut(s) 206, 279, 364, 670, 886
BssNI GRCGYC 1 cut(s) 1194
BssT1I CCWWGG 3 cut(s) 152, 173, 1203
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 3 cut(s) 65, 769, 1091
BstACI GRCGYC 1 cut(s) 1194
BstAFI CTTAAG 1 cut(s) 311
BstBI TTCGAA 1 cut(s) 438
BstC8I GCNNGC 4 cut(s) 8, 588, 721, 1007
BstDEI CTNAG 8 cut(s) 297, 325, 384, 431, 494, 1010, 1152, 1233
BstDSI CCRYGG 1 cut(s) 1189
BstENI CCTNNNNNAGG 1 cut(s) 1126
BstF5I GGATG 3 cut(s) 507, 896, 1072
BstKTI GATC 5 cut(s) 209, 282, 367, 673, 889
BstMAI GTCTC 3 cut(s) 63, 287, 1009
BstMBI GATC 5 cut(s) 206, 279, 364, 670, 886
BstMWI GCNNNNNNNGC 2 cut(s) 368, 401
BstNI CCWGG 1 cut(s) 141
BstPAI GACNNNNGTC 1 cut(s) 349
BstSCI CCNGG 2 cut(s) 139, 1109
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 5 cut(s) 66, 118, 723, 1040, 1086
BstV2I GAAGAC 1 cut(s) 349
Bsu15I ATCGAT 1 cut(s) 673
BsuI GTATCC 1 cut(s) 1094
BsuRI GGCC 1 cut(s) 231
BsuTUI ATCGAT 1 cut(s) 673
BtgI CCRYGG 1 cut(s) 1189
BtrI CACGTC 2 cut(s) 981, 1096
BtsCI GGATG 3 cut(s) 507, 896, 1072
BtsIMutI CAGTG 3 cut(s) 46, 774, 1096
Cac8I GCNNGC 4 cut(s) 8, 588, 721, 1007
ClaI ATCGAT 1 cut(s) 673
CseI GACGC 1 cut(s) 1183
Csp6I GTAC 3 cut(s) 223, 1070, 1208
CspCI CAANNNNNGTGG 4 cut(s) 46, 81, 360, 395
CviAII CATG 1 cut(s) 368
CviQI GTAC 3 cut(s) 223, 1070, 1208
DdeI CTNAG 8 cut(s) 297, 325, 384, 431, 494, 1010, 1152, 1233
DpnI GATC 5 cut(s) 208, 281, 366, 672, 888
DpnII GATC 5 cut(s) 206, 279, 364, 670, 886
DrdI GACNNNNNNGTC 1 cut(s) 947
DseDI GACNNNNNNGTC 1 cut(s) 947
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 3 cut(s) 152, 173, 1203
Eco24I GRGCYC 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 262
Eco57I CTGAAG 2 cut(s) 546, 985
Eco88I CYCGRG 2 cut(s) 218, 929
EcoICRI GAGCTC 1 cut(s) 262
EcoNI CCTNNNNNAGG 1 cut(s) 1126
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 3 cut(s) 152, 173, 1203
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 3 cut(s) 152, 173, 1203
FaeI CATG 1 cut(s) 371
FaqI GGGAC 1 cut(s) 791
FatI CATG 1 cut(s) 367
FbaI TGATCA 2 cut(s) 364, 886
FblI GTMKAC 2 cut(s) 186, 951
Fnu4HI GCNGC 5 cut(s) 55, 132, 737, 1054, 1075
FokI GGATG 3 cut(s) 514, 883, 1079
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 5 cut(s) 55, 132, 737, 1054, 1075
FspBI CTAG 1 cut(s) 174
GluI GCNGC 5 cut(s) 55, 132, 737, 1054, 1075
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 1110
HgaI GACGC 1 cut(s) 1183
Hin1I GRCGYC 1 cut(s) 1194
Hin1II CATG 1 cut(s) 371
HincII GTYRAC 1 cut(s) 952
HindII GTYRAC 1 cut(s) 952
HindIII AAGCTT 5 cut(s) 299, 386, 906, 1007, 1173
HinfI GANTC 7 cut(s) 320, 350, 435, 855, 881, 923, 1017
HpaII CCGG 1 cut(s) 1110
HphI GGTGA 2 cut(s) 530, 1171
Hpy166II GTNNAC 7 cut(s) 6, 187, 700, 918, 952, 1183, 1210
Hpy188I TCNGA 9 cut(s) 181, 211, 434, 478, 549, 571, 682, 808, 886
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 7 cut(s) 6, 187, 700, 918, 952, 1183, 1210
Hpy99I CGWCG 1 cut(s) 985
HpyAV CCTTC 6 cut(s) 7, 492, 509, 595, 845, 1127
HpyCH4III ACNGT 3 cut(s) 65, 769, 1091
HpyCH4IV ACGT 2 cut(s) 980, 1095
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 401
HpyF3I CTNAG 8 cut(s) 297, 325, 384, 431, 494, 1010, 1152, 1233
HpySE526I ACGT 2 cut(s) 980, 1095
Hsp92I GRCGYC 1 cut(s) 1194
Hsp92II CATG 1 cut(s) 371
Ksp22I TGATCA 2 cut(s) 364, 886
Kzo9I GATC 5 cut(s) 206, 279, 364, 670, 886
LmnI GCTCC 2 cut(s) 259, 267
Lsp1109I GCAGC 5 cut(s) 66, 118, 723, 1040, 1086
LweI GCATC 1 cut(s) 1232
MaeI CTAG 1 cut(s) 174
MaeII ACGT 2 cut(s) 980, 1095
MaeIII GTNAC 4 cut(s) 81, 351, 1091, 1195
MalI GATC 5 cut(s) 208, 281, 366, 672, 888
MboI GATC 5 cut(s) 206, 279, 364, 670, 886
MboII GAAGA 4 cut(s) 289, 354, 701, 991
MfeI CAATTG 1 cut(s) 485
MhlI GDGCHC 2 cut(s) 8, 264
MlyI GAGTC 4 cut(s) 329, 359, 875, 1011
MmeI TCCRAC 1 cut(s) 779
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 6 cut(s) 234, 312, 411, 575, 620, 794
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 1 cut(s) 1110
MspR9I CCNGG 2 cut(s) 141, 1111
MunI CAATTG 1 cut(s) 485
Mva1269I GAATGC 1 cut(s) 1077
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 368, 401
NciI CCSGG 1 cut(s) 1111
NdeII GATC 5 cut(s) 206, 279, 364, 670, 886
NlaIII CATG 1 cut(s) 371
NmuCI GTSAC 3 cut(s) 351, 1091, 1195
NspV TTCGAA 1 cut(s) 438
PaeR7I CTCGAG 1 cut(s) 218
PctI GAATGC 1 cut(s) 1077
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 3 cut(s) 435, 855, 923
PkrI GCNGC 5 cut(s) 56, 133, 738, 1055, 1076
PleI GAGTC 4 cut(s) 328, 358, 875, 1011
PpsI GAGTC 4 cut(s) 328, 358, 875, 1011
PshAI GACNNNNGTC 1 cut(s) 349
Psp124BI GAGCTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspXI VCTCGAGB 1 cut(s) 218
RsaI GTAC 3 cut(s) 224, 1071, 1209
RsaNI GTAC 3 cut(s) 223, 1070, 1208
SacI GAGCTC 1 cut(s) 264
SalI GTCGAC 1 cut(s) 950
SaqAI TTAA 6 cut(s) 234, 312, 411, 575, 620, 794
SatI GCNGC 5 cut(s) 55, 132, 737, 1054, 1075
Sau3AI GATC 5 cut(s) 206, 279, 364, 670, 886
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 4 cut(s) 329, 359, 875, 1011
ScrFI CCNGG 2 cut(s) 141, 1111
SduI GDGCHC 2 cut(s) 8, 264
SfaNI GCATC 1 cut(s) 1232
Sfr274I CTCGAG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 438
SlaI CTCGAG 1 cut(s) 218
SmlI CTYRAG 4 cut(s) 218, 311, 389, 781
SmoI CTYRAG 4 cut(s) 218, 311, 389, 781
SsiI CCGC 1 cut(s) 739
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 139, 1109
StyI CCWWGG 3 cut(s) 152, 173, 1203
TaaI ACNGT 3 cut(s) 65, 769, 1091
TaiI ACGT 2 cut(s) 983, 1098
TaqI TCGA 7 cut(s) 165, 219, 438, 673, 687, 951, 983
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 3 cut(s) 435, 855, 923
Tru1I TTAA 6 cut(s) 234, 312, 411, 575, 620, 794
Tru9I TTAA 6 cut(s) 234, 312, 411, 575, 620, 794
TscAI CASTG 3 cut(s) 46, 774, 1096
TseFI GTSAC 3 cut(s) 351, 1091, 1195
TseI GCWGC 5 cut(s) 54, 131, 736, 1053, 1074
Tsp45I GTSAC 3 cut(s) 351, 1091, 1195
TspDTI ATGAA 3 cut(s) 518, 614, 948
TspRI CASTG 3 cut(s) 46, 774, 1096
Vha464I CTTAAG 1 cut(s) 311
VneI GTGCAC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 1126
XapI RAATTY 4 cut(s) 116, 550, 651, 995
XhoI CTCGAG 1 cut(s) 218
XmaJI CCTAGG 1 cut(s) 173
XmiI GTMKAC 2 cut(s) 186, 951
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 1 cut(s) 174
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.