Rh2DG438000

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009965
Physical Location & Seq
Forward (+)
63347230 .. 63351632
4403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG438000.1

Sequence Viewer

Length: 1734 bp
ATGAGTTTACAGCCTAGTATGAAGAATCAAATCAATGGTCATGTTGCTACTGGATTCAATTTCAGTGGACTATTCATTAATTTGTTTAATTTTTTTTACCAGGAAGACACATACATGCCAAAGGTCAGTGTTGATGATTGCACATCCAGTATTTCTCCAAGCAATAAACATATTAGGGTTAAAGATAGTTTGCTGTTGCCAGAGTTCAATGATCTTGTGAATGAATTTGACTTTGCTGGCCCCAAGTCTGGATTTTCTCCAATGAAGAATGTTGAAATTCCTATGTCAGATGTGGAGACTCCAAGGGCATTTAGAACTTTAGAAAAGGACGATTATGAGCTAGAAATCAGACACCTCAGAGACATGGTTAGAAAGCTTCGAGAGAGGGAGCGGCATCTTGAGGTCCAGTTGCTAGAGTATTATGGCCTTAAAGAGCAGGAGACTGCTGTAATGGAGCTCCAAAATCGGTTGAAGATAAGCAGTATGGAGGCTAACCTTTTTAGTCTCAAGATCGAGTCCTTACAGGCAGAAAACCATAGACTAGAGGGACAAGCTTCTAATCATGCAAAAGTGGTGGCTGAGCTTGAGGCTACTAGGGCAAAAATTCAGATGCTTAAAAAGAAACTCAGATCCGAAGCTGAACACAACAAAGAACAGATCTTAAGTCTTAAGAAAAGAGTTGAAAATTTGCAAGACAATGAAGCTGCCGCCGTTAATTTAGAGATTCAATTAAAGCTGAGAAGGCTAAAAGATTTGGAGGGTGAAACAGAAGAGTTGAGAGCATCTAATTTGAGGTTGCAACTGCAAAATTCTGAGTTGGCTCGGAGGTTGGAATCCACACAAATCCTAGCAAATTCTATTCTGGAAGTGCCAGAGGCAGAAGCATTGAAAAAAGAGAGGGAGCGCTTTAGACAAGAAAATGAAGATTTGGCAAAGGAAATTGAGCAACTTCGTGTTGATCGAAGTTCTGATGTTGAAGAATTAGTTTACCTCAGGTGGATAAATGCTTGCTTACGTTATGAGTTGCGGAATTATCAGCCCCCAACTGGTAAAACTGTGGCAAGGGACTTGAGTAAATCACTAAGCCATAAATCTGAAGAGAAAGCCAAGCAGCTAATACTTGAATATGCAAACACTGAAGGGGCAGGGGATAAGGGGAGTCACATTGATTTTGAATCTGATAGATGGACATCCCCAACTTCCCTTCTTACAGACTCGGGAGAGTATGATGACTTTTCCGCTGATCATTCATCTGCTACAAAAACTCATACCTCAAGTAAGCATAAGTTGTTCAGCAAGCTTAGGAGGATTATACGGGGTAAAGACACCCATGATCAACACCATTCAGAAGATAACTATTCTCCATATGGCAGTTCAAGTAAATCAGTAGCAGCTTATGGTGGACCTGAGGGTCAGAGTAACATATTTTCATCTCATAGTTCTTCTCGAGCTTCTTTAGATCTTCCCAGATGGAGGAGTCCAAAGGAACATGATTCTAAGGATACACGCAGTGTTCAGAGACATAGTGATGTGGGAGTTTTCCCAGGGTATAAGAGATTTATCTTGGGTGGGGAAGGTTCTACTGATTCCCCTCCAAAAGATCAATTTGATCATGACTCTGATTCTGCAGAGAAATCTGAGTTGGTGAAATATGCAGAAGCTTTGAAGACCTCTCGCACTGGGACGCCAGCTCTCAAACCCAACGTACATAGGAAATCAGCATCAGCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

577

Amino Acids

65.78

Weight (kDa)

6.32

Isoelectric Point (pI)

58.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52080 AT1G52080
fragaria_vesca FvH4_6g32630
malus_domestica MD09G1199900.v1.1
prunus_persica Prupe.3G056400_v2.0.a1 Prupe.3G056400_v2.0.a1
pyrus_communis pycom09g11710 pycom17g18980
rosa_chinensis RchiOBHm_Chr2g0141111
rosa_laevigata RLG00000019915
rosa_multiflora Rmu_sc0006556.1_g000011
rosa_roxburghii Rroxscaffold_2G00104200
rosa_rugosa Rorug02G0367200 Rorug02G0367300 Rorug02G0367400
rosa_samantha Rh2AG418200 Rh2BG428200 Rh2CG404600 Rh2DG438000
rosa_wichuraiana Rw0G019790 Rw2G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1410
AccBSI CCGCTC 1 cut(s) 391
AciI CCGC 4 cut(s) 391, 708, 1027, 1239
AclWI GGATC 1 cut(s) 624
AcsI RAATTY 6 cut(s) 224, 276, 603, 685, 808, 853
AcuI CTGAAG 2 cut(s) 1116, 1158
AcyI GRCGYC 1 cut(s) 1685
AdeI CACNNNGTG 1 cut(s) 1511
AfaI GTAC 1 cut(s) 1707
AfeI AGCGCT 1 cut(s) 905
AfiI CCNNNNNNNGG 3 cut(s) 248, 1046, 1473
AflII CTTAAG 2 cut(s) 661, 668
AjnI CCWGG 2 cut(s) 99, 1543
AjuI GAANNNNNNNTTGG 2 cut(s) 1625, 1657
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 5 cut(s) 290, 354, 434, 509, 1513
AlwI GGATC 1 cut(s) 624
Ama87I CYCGRG 2 cut(s) 1216, 1446
Aor51HI AGCGCT 1 cut(s) 905
AoxI GGCC 2 cut(s) 238, 424
ApeKI GCWGC 3 cut(s) 704, 1111, 1391
ApoI RAATTY 6 cut(s) 224, 276, 603, 685, 808, 853
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
AseI ATTAAT 1 cut(s) 78
AspLEI GCGC 1 cut(s) 906
AspS9I GGNCC 3 cut(s) 239, 403, 1403
AsuHPI GGTGA 2 cut(s) 773, 1657
AvaI CYCGRG 2 cut(s) 1216, 1446
AvaII GGWCC 2 cut(s) 403, 1403
AxyI CCTNAGG 2 cut(s) 992, 1407
BanII GRGCYC 1 cut(s) 459
BbsI GAAGAC 2 cut(s) 111, 1673
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 3 cut(s) 691, 1123, 1403
BccI CCATC 2 cut(s) 1179, 1464
BceAI ACGGC 1 cut(s) 695
BciT130I CCWGG 2 cut(s) 101, 1545
BciVI GTATCC 1 cut(s) 1495
BclI TGATCA 3 cut(s) 1243, 1333, 1609
BcoDI GTCTC 5 cut(s) 290, 354, 434, 509, 1513
BfaI CTAG 6 cut(s) 15, 341, 413, 542, 594, 848
BfmI CTRYAG 1 cut(s) 1626
BfoI RGCGCY 1 cut(s) 907
BfrI CTTAAG 2 cut(s) 661, 668
BfuI GTATCC 1 cut(s) 1495
BglII AGATCT 2 cut(s) 657, 1459
BisI GCNGC 5 cut(s) 392, 705, 708, 1112, 1392
BlpI GCTNAGC 1 cut(s) 579
BlsI GCNGC 5 cut(s) 393, 706, 709, 1113, 1393
Bme1390I CCNGG 2 cut(s) 101, 1545
Bme18I GGWCC 2 cut(s) 403, 1403
BmeT110I CYCGRG 2 cut(s) 1216, 1446
BmgT120I GGNCC 3 cut(s) 239, 403, 1403
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 101, 1545
BmrI ACTGGG 1 cut(s) 1689
BmsI GCATC 4 cut(s) 403, 600, 791, 1730
BmuI ACTGGG 1 cut(s) 1689
BpiI GAAGAC 2 cut(s) 111, 1673
Bpu10I CCTNAGC 1 cut(s) 1301
Bpu1102I GCTNAGC 1 cut(s) 579
BpuEI CTTGAG 5 cut(s) 419, 491, 605, 1090, 1258
BsaBI GATNNNNATC 1 cut(s) 1189
BsaHI GRCGYC 1 cut(s) 1685
BsaJI CCNNGG 3 cut(s) 302, 1543, 1544
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 1046, 1473
Bse1I ACTGG 5 cut(s) 55, 147, 406, 1051, 1684
Bse21I CCTNAGG 2 cut(s) 992, 1407
Bse8I GATNNNNATC 1 cut(s) 1189
BseBI CCWGG 2 cut(s) 101, 1545
BseDI CCNNGG 3 cut(s) 302, 1543, 1544
BseGI GGATG 2 cut(s) 143, 1190
BseJI GATNNNNATC 1 cut(s) 1189
BseLI CCNNNNNNNGG 3 cut(s) 248, 1046, 1473
BseMII CTCAG 8 cut(s) 370, 570, 640, 728, 804, 1006, 1398, 1629
BseNI ACTGG 5 cut(s) 55, 147, 406, 1051, 1684
BseRI GAGGAG 1 cut(s) 1489
BseXI GCAGC 3 cut(s) 691, 1123, 1403
BshFI GGCC 2 cut(s) 240, 426
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 2 cut(s) 1216, 1446
BslFI GGGAC 3 cut(s) 561, 1079, 1696
BslI CCNNNNNNNGG 3 cut(s) 248, 1046, 1473
BsmAI GTCTC 5 cut(s) 290, 354, 434, 509, 1513
BsmFI GGGAC 3 cut(s) 561, 1079, 1696
BsnI GGCC 2 cut(s) 240, 426
BsoBI CYCGRG 2 cut(s) 1216, 1446
Bsp1286I GDGCHC 1 cut(s) 459
Bsp1720I GCTNAGC 1 cut(s) 579
BspACI CCGC 4 cut(s) 391, 708, 1027, 1239
BspANI GGCC 2 cut(s) 240, 426
BspCNI CTCAG 8 cut(s) 369, 571, 639, 729, 805, 1005, 1399, 1630
BspHI TCATGA 1 cut(s) 1612
BspLI GGNNCC 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 1630
BspPI GGATC 1 cut(s) 624
BspTI CTTAAG 2 cut(s) 661, 668
BsrBI CCGCTC 1 cut(s) 391
BsrI ACTGG 5 cut(s) 55, 147, 406, 1051, 1684
BssECI CCNNGG 3 cut(s) 302, 1543, 1544
BssNI GRCGYC 1 cut(s) 1685
BssT1I CCWWGG 1 cut(s) 302
Bst2UI CCWGG 2 cut(s) 101, 1545
Bst4CI ACNGT 1 cut(s) 1057
Bst6I CTCTTC 2 cut(s) 765, 1092
BstACI GRCGYC 1 cut(s) 1685
BstAFI CTTAAG 2 cut(s) 661, 668
BstC8I GCNNGC 4 cut(s) 238, 1009, 1298, 1689
BstF5I GGATG 2 cut(s) 143, 1190
BstH2I RGCGCY 1 cut(s) 907
BstHHI GCGC 1 cut(s) 906
BstMAI GTCTC 5 cut(s) 290, 354, 434, 509, 1513
BstMWI GCNNNNNNNGC 2 cut(s) 596, 742
BstNI CCWGG 2 cut(s) 101, 1545
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 2 cut(s) 99, 1543
BstSFI CTRYAG 1 cut(s) 1626
BstV1I GCAGC 3 cut(s) 691, 1123, 1403
BstV2I GAAGAC 2 cut(s) 111, 1673
BstX2I RGATCY 3 cut(s) 629, 657, 1459
BstYI RGATCY 3 cut(s) 629, 657, 1459
Bsu36I CCTNAGG 2 cut(s) 992, 1407
BsuI GTATCC 1 cut(s) 1495
BsuRI GGCC 2 cut(s) 240, 426
BtsCI GGATG 2 cut(s) 143, 1190
BtsI GCAGTG 1 cut(s) 1516
BtsIMutI CAGTG 5 cut(s) 70, 133, 1134, 1516, 1677
Cac8I GCNNGC 4 cut(s) 238, 1009, 1298, 1689
CciI TCATGA 1 cut(s) 1612
CfoI GCGC 1 cut(s) 906
Cfr13I GGNCC 3 cut(s) 239, 403, 1403
CseI GACGC 1 cut(s) 1693
Csp6I GTAC 1 cut(s) 1706
CspCI CAANNNNNGTGG 4 cut(s) 46, 81, 555, 590
CviAII CATG 7 cut(s) 41, 115, 364, 563, 1331, 1490, 1613
CviQI GTAC 1 cut(s) 1706
DraIII CACNNNGTG 1 cut(s) 1511
DrdI GACNNNNNNGTC 1 cut(s) 1410
DseDI GACNNNNNNGTC 1 cut(s) 1410
Eam1104I CTCTTC 2 cut(s) 765, 1092
EarI CTCTTC 2 cut(s) 765, 1092
Ecl136II GAGCTC 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 459
Eco47I GGWCC 2 cut(s) 403, 1403
Eco47III AGCGCT 1 cut(s) 905
Eco53kI GAGCTC 1 cut(s) 457
Eco57I CTGAAG 2 cut(s) 1116, 1158
Eco81I CCTNAGG 2 cut(s) 992, 1407
Eco88I CYCGRG 2 cut(s) 1216, 1446
EcoICRI GAGCTC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 99, 1543
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 7 cut(s) 44, 118, 367, 566, 1334, 1493, 1616
FaqI GGGAC 3 cut(s) 561, 1079, 1696
FatI CATG 7 cut(s) 40, 114, 363, 562, 1330, 1489, 1612
FauNDI CATATG 1 cut(s) 1366
FbaI TGATCA 3 cut(s) 1243, 1333, 1609
Fnu4HI GCNGC 5 cut(s) 392, 705, 708, 1112, 1392
FokI GGATG 2 cut(s) 130, 1177
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 5 cut(s) 392, 705, 708, 1112, 1392
FspBI CTAG 6 cut(s) 15, 341, 413, 542, 594, 848
GlaI GCGC 1 cut(s) 905
GluI GCNGC 5 cut(s) 392, 705, 708, 1112, 1392
HaeII RGCGCY 1 cut(s) 907
HaeIII GGCC 2 cut(s) 240, 426
HgaI GACGC 1 cut(s) 1693
HhaI GCGC 1 cut(s) 906
Hin1I GRCGYC 1 cut(s) 1685
Hin1II CATG 7 cut(s) 44, 118, 367, 566, 1334, 1493, 1616
Hin6I GCGC 1 cut(s) 904
HinP1I GCGC 1 cut(s) 904
HindIII AAGCTT 4 cut(s) 374, 552, 1298, 1659
HphI GGTGA 2 cut(s) 773, 1657
Hpy166II GTNNAC 4 cut(s) 8, 68, 988, 1403
Hpy188III TCNNGA 8 cut(s) 249, 380, 398, 508, 863, 1218, 1446, 1613
Hpy8I GTNNAC 4 cut(s) 8, 68, 988, 1403
HpyAV CCTTC 4 cut(s) 735, 1133, 1214, 1568
HpyCH4III ACNGT 1 cut(s) 1057
HpyCH4IV ACGT 2 cut(s) 1015, 1704
HpyCH4V TGCA 8 cut(s) 141, 566, 691, 799, 805, 1130, 1628, 1655
HpyF10VI GCNNNNNNNGC 2 cut(s) 596, 742
HpySE526I ACGT 2 cut(s) 1015, 1704
Hsp92I GRCGYC 1 cut(s) 1685
Hsp92II CATG 7 cut(s) 44, 118, 367, 566, 1334, 1493, 1616
HspAI GCGC 1 cut(s) 904
Ksp22I TGATCA 3 cut(s) 1243, 1333, 1609
LmnI GCTCC 4 cut(s) 388, 454, 462, 901
Lsp1109I GCAGC 3 cut(s) 691, 1123, 1403
LweI GCATC 4 cut(s) 403, 600, 791, 1730
MaeI CTAG 6 cut(s) 15, 341, 413, 542, 594, 848
MaeII ACGT 2 cut(s) 1015, 1704
MaeIII GTNAC 2 cut(s) 1160, 1418
MbiI CCGCTC 1 cut(s) 391
MflI RGATCY 3 cut(s) 629, 657, 1459
MhlI GDGCHC 1 cut(s) 459
MlyI GAGTC 6 cut(s) 292, 524, 1168, 1208, 1486, 1610
MmeI TCCRAC 1 cut(s) 810
MseI TTAA 9 cut(s) 78, 87, 180, 429, 615, 662, 669, 714, 731
MslI CAYNNNNRTG 2 cut(s) 113, 1527
MspA1I CMGCKG 1 cut(s) 1241
MspCI CTTAAG 2 cut(s) 661, 668
MspR9I CCNGG 2 cut(s) 101, 1545
MvaI CCWGG 2 cut(s) 101, 1545
MwoI GCNNNNNNNGC 2 cut(s) 596, 742
NdeI CATATG 1 cut(s) 1366
NlaIII CATG 7 cut(s) 44, 118, 367, 566, 1334, 1493, 1616
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 1160
NspI RCATGY 1 cut(s) 118
PaeR7I CTCGAG 1 cut(s) 1446
PagI TCATGA 1 cut(s) 1612
PasI CCCWGGG 1 cut(s) 1544
PcsI WCGNNNNNNNCGW 1 cut(s) 958
PfeI GAWTC 8 cut(s) 25, 54, 724, 833, 1175, 1493, 1586, 1622
PkrI GCNGC 5 cut(s) 393, 706, 709, 1113, 1393
PleI GAGTC 6 cut(s) 292, 523, 1167, 1208, 1485, 1610
PpsI GAGTC 6 cut(s) 292, 523, 1167, 1208, 1485, 1610
PshBI ATTAAT 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 99, 1543
PspGI CCWGG 2 cut(s) 99, 1543
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 3 cut(s) 239, 403, 1403
PstI CTGCAG 1 cut(s) 1630
PsuI RGATCY 3 cut(s) 629, 657, 1459
RsaI GTAC 1 cut(s) 1707
RsaNI GTAC 1 cut(s) 1706
RseI CAYNNNNRTG 2 cut(s) 113, 1527
SacI GAGCTC 1 cut(s) 459
SaqAI TTAA 9 cut(s) 78, 87, 180, 429, 615, 662, 669, 714, 731
SatI GCNGC 5 cut(s) 392, 705, 708, 1112, 1392
Sau96I GGNCC 3 cut(s) 239, 403, 1403
SchI GAGTC 6 cut(s) 292, 524, 1168, 1208, 1486, 1610
ScrFI CCNGG 2 cut(s) 101, 1545
SduI GDGCHC 1 cut(s) 459
SfaNI GCATC 4 cut(s) 403, 600, 791, 1730
SfcI CTRYAG 1 cut(s) 1626
Sfr274I CTCGAG 1 cut(s) 1446
SinI GGWCC 2 cut(s) 403, 1403
SlaI CTCGAG 1 cut(s) 1446
SmiMI CAYNNNNRTG 2 cut(s) 113, 1527
SmlI CTYRAG 8 cut(s) 398, 506, 584, 661, 668, 1069, 1273, 1446
SmoI CTYRAG 8 cut(s) 398, 506, 584, 661, 668, 1069, 1273, 1446
SsiI CCGC 4 cut(s) 391, 708, 1027, 1239
SspMI CTAG 6 cut(s) 15, 341, 413, 542, 594, 848
SstI GAGCTC 1 cut(s) 459
StyD4I CCNGG 2 cut(s) 99, 1543
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 1057
TaiI ACGT 2 cut(s) 1018, 1707
TaqI TCGA 4 cut(s) 379, 513, 961, 1447
TauI GCSGC 2 cut(s) 394, 710
TfiI GAWTC 8 cut(s) 25, 54, 724, 833, 1175, 1493, 1586, 1622
Tru1I TTAA 9 cut(s) 78, 87, 180, 429, 615, 662, 669, 714, 731
Tru9I TTAA 9 cut(s) 78, 87, 180, 429, 615, 662, 669, 714, 731
TscAI CASTG 5 cut(s) 70, 133, 1141, 1516, 1684
TseFI GTSAC 1 cut(s) 1160
TseI GCWGC 3 cut(s) 704, 1111, 1391
Tsp45I GTSAC 1 cut(s) 1160
TspDTI ATGAA 8 cut(s) 35, 64, 237, 278, 714, 936, 1239, 1419
TspRI CASTG 5 cut(s) 70, 133, 1141, 1516, 1684
Vha464I CTTAAG 2 cut(s) 661, 668
VpaK11BI GGWCC 2 cut(s) 403, 1403
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 6 cut(s) 224, 276, 603, 685, 808, 853
XceI RCATGY 1 cut(s) 118
XhoI CTCGAG 1 cut(s) 1446
XspI CTAG 6 cut(s) 15, 341, 413, 542, 594, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.