Rorug02G0367400

Protein CHUP1, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009965
Physical Location & Seq
Reverse (-)
46777687 .. 46778938
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0367400.1

Sequence Viewer

Length: 516 bp
ATGGTCGCTGTGGTGGAGATGCTCTCTGTACTTATCCCTGAAATTTTGGTGGTTGGGTACATCAAAATCAGCATGGGTCTTTCTTCCGATCTTTCGATTTGGTTGGATTTTGATGCAGGCTACTTTGCGGTGGTGCGGTTGCTTTGTTCTTCCAGTCGAAGTATTGGATTCGAACATTGGAGATATGGATGTGGGTTCCATCTCACCGAGTTCTCTCGCATGGCCGACCCTTCCTTTGAGCTTGGCCGCCCTGGCGAGTCAGTCATCGAGCTTGGCTGCGTTATTGACCGTGGTCTCAGGGAGAGCCGGGCAGTTGATACAGAGTCGCTTTGTATTATTTCTAGCAAGTTGGTGTGGGCTATACGTGATGACCTCCACATTCTAGATAATGGAGGGAATCTTATTGATGCTGCTAATATTGCTGCACTGGCTGGTATGTTGACGTTCCGGAGGCCTGAGTGCTCATTAGGGGGAGAAAATGGTCAGGGAGTCATCATACATCCACATGAGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.65

Weight (kDa)

4.9

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 69 - 152 1.5e-09 3' exoribonuclease family, domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52080 AT1G52080
fragaria_vesca FvH4_6g32630
malus_domestica MD09G1199900.v1.1
prunus_persica Prupe.3G056400_v2.0.a1 Prupe.3G056400_v2.0.a1
pyrus_communis pycom09g11710 pycom17g18980
rosa_chinensis RchiOBHm_Chr2g0141111
rosa_laevigata RLG00000019915
rosa_multiflora Rmu_sc0006556.1_g000011
rosa_roxburghii Rroxscaffold_2G00104200
rosa_rugosa Rorug02G0367200 Rorug02G0367300 Rorug02G0367400
rosa_samantha Rh2AG418200 Rh2BG428200 Rh2CG404600 Rh2DG438000
rosa_wichuraiana Rw0G019790 Rw2G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 447
AciI CCGC 3 cut(s) 128, 136, 247
AcoI YGGCCR 2 cut(s) 222, 244
AcsI RAATTY 1 cut(s) 42
AfaI GTAC 2 cut(s) 30, 59
AfiI CCNNNNNNNGG 1 cut(s) 509
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 2 cut(s) 241, 271
AluI AGCT 2 cut(s) 241, 271
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 1 cut(s) 299
Aor13HI TCCGGA 1 cut(s) 447
AoxI GGCC 3 cut(s) 222, 244, 452
ApeKI GCWGC 3 cut(s) 276, 410, 422
ApoI RAATTY 1 cut(s) 42
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 196
AsuII TTCGAA 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 464
BbvI GCAGC 3 cut(s) 263, 397, 409
BccI CCATC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 2 cut(s) 342, 383
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 4 cut(s) 247, 277, 411, 423
BlsI GCNGC 4 cut(s) 248, 278, 412, 424
Bme1390I CCNGG 2 cut(s) 252, 308
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 2 cut(s) 252, 308
BmsI GCATC 3 cut(s) 9, 103, 397
BoxI GACNNNNGTC 1 cut(s) 291
BplI GAGNNNNNCTC 2 cut(s) 8, 40
Bpu14I TTCGAA 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 365
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 250, 289
BsaWI WCCGGW 1 cut(s) 447
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 2 cut(s) 153, 432
BseAI TCCGGA 1 cut(s) 447
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 250, 289
BseGI GGATG 2 cut(s) 194, 499
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMII CTCAG 2 cut(s) 310, 447
BseNI ACTGG 2 cut(s) 153, 432
BseXI GCAGC 3 cut(s) 263, 397, 409
BsgI GTGCAG 1 cut(s) 408
BshFI GGCC 3 cut(s) 224, 246, 454
BsiHKAI GWGCWC 1 cut(s) 464
BsiSI CCGG 2 cut(s) 307, 448
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 1 cut(s) 299
BsnI GGCC 3 cut(s) 224, 246, 454
Bso31I GGTCTC 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 464
Bsp13I TCCGGA 1 cut(s) 447
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 3 cut(s) 128, 136, 247
BspANI GGCC 3 cut(s) 224, 246, 454
BspCNI CTCAG 2 cut(s) 309, 448
BspEI TCCGGA 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 197
BspT104I TTCGAA 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 299
BsrI ACTGG 2 cut(s) 153, 432
BssECI CCNNGG 2 cut(s) 250, 289
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 365
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 296, 456
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 2 cut(s) 194, 499
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 3 cut(s) 252, 419, 428
BstNI CCWGG 1 cut(s) 252
BstPAI GACNNNNGTC 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 250, 306
BstV1I GCAGC 3 cut(s) 263, 397, 409
BsuRI GGCC 3 cut(s) 224, 246, 454
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 2 cut(s) 194, 499
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 29, 58
CviAII CATG 3 cut(s) 73, 220, 506
CviQI GTAC 2 cut(s) 29, 58
DdeI CTNAG 2 cut(s) 296, 456
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
EaeI YGGCCR 2 cut(s) 222, 244
Eco147I AGGCCT 1 cut(s) 454
Eco31I GGTCTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 76, 223, 509
FaiI YATR 7 cut(s) 74, 186, 221, 362, 437, 497, 507
FatI CATG 3 cut(s) 72, 219, 505
Fnu4HI GCNGC 4 cut(s) 247, 277, 411, 423
FokI GGATG 2 cut(s) 201, 486
Fsp4HI GCNGC 4 cut(s) 247, 277, 411, 423
FspBI CTAG 2 cut(s) 342, 383
GluI GCNGC 4 cut(s) 247, 277, 411, 423
HaeIII GGCC 3 cut(s) 224, 246, 454
HapII CCGG 2 cut(s) 307, 448
Hin1II CATG 3 cut(s) 76, 223, 509
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HinfI GANTC 5 cut(s) 168, 257, 323, 397, 489
HpaII CCGG 2 cut(s) 307, 448
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 383, 448
Hpy8I GTNNAC 1 cut(s) 441
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 2 cut(s) 364, 443
HpyCH4V TGCA 2 cut(s) 116, 425
HpyF10VI GCNNNNNNNGC 3 cut(s) 252, 419, 428
HpyF3I CTNAG 2 cut(s) 296, 456
HpySE526I ACGT 2 cut(s) 364, 443
Hsp92II CATG 3 cut(s) 76, 223, 509
Kpn2I TCCGGA 1 cut(s) 447
Kzo9I GATC 1 cut(s) 88
Lsp1109I GCAGC 3 cut(s) 263, 397, 409
LweI GCATC 3 cut(s) 9, 103, 397
MaeI CTAG 2 cut(s) 342, 383
MaeII ACGT 2 cut(s) 364, 443
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 75, 141
MhlI GDGCHC 1 cut(s) 464
MluCI AATT 1 cut(s) 42
MlyI GAGTC 3 cut(s) 266, 332, 498
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 4 cut(s) 383, 386, 444, 502
MroI TCCGGA 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 504
MspI CCGG 2 cut(s) 307, 448
MspR9I CCNGG 2 cut(s) 252, 308
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 3 cut(s) 252, 419, 428
NciI CCSGG 1 cut(s) 308
NdeII GATC 1 cut(s) 88
NlaIII CATG 3 cut(s) 76, 223, 509
NlaIV GGNNCC 1 cut(s) 197
NspV TTCGAA 1 cut(s) 171
PceI AGGCCT 1 cut(s) 454
PfeI GAWTC 2 cut(s) 168, 397
PkrI GCNGC 4 cut(s) 248, 278, 412, 424
PleI GAGTC 3 cut(s) 265, 331, 497
PpsI GAGTC 3 cut(s) 265, 331, 497
Ppu21I YACGTR 1 cut(s) 365
PshAI GACNNNNGTC 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 197
RsaI GTAC 2 cut(s) 30, 59
RsaNI GTAC 2 cut(s) 29, 58
RseI CAYNNNNRTG 1 cut(s) 504
SatI GCNGC 4 cut(s) 247, 277, 411, 423
Sau3AI GATC 1 cut(s) 88
SchI GAGTC 3 cut(s) 266, 332, 498
ScrFI CCNGG 2 cut(s) 252, 308
SduI GDGCHC 1 cut(s) 464
SetI ASST 5 cut(s) 243, 273, 367, 375, 446
SfaNI GCATC 3 cut(s) 9, 103, 397
SfuI TTCGAA 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 504
Sse9I AATT 1 cut(s) 42
SseBI AGGCCT 1 cut(s) 454
SsiI CCGC 3 cut(s) 128, 136, 247
SspI AATATT 1 cut(s) 418
SspMI CTAG 2 cut(s) 342, 383
StuI AGGCCT 1 cut(s) 454
StyD4I CCNGG 2 cut(s) 250, 306
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 2 cut(s) 367, 446
TaqI TCGA 4 cut(s) 95, 157, 171, 267
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 28
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 2 cut(s) 168, 397
TscAI CASTG 1 cut(s) 432
TseI GCWGC 3 cut(s) 276, 410, 422
TspRI CASTG 1 cut(s) 432
XapI RAATTY 1 cut(s) 42
XbaI TCTAGA 1 cut(s) 382
XspI CTAG 2 cut(s) 342, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.