Protein CHUP1, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G52080 AT1G52080 |
| fragaria_vesca | FvH4_6g32630 |
| malus_domestica | MD09G1199900.v1.1 |
| prunus_persica | Prupe.3G056400_v2.0.a1 Prupe.3G056400_v2.0.a1 |
| pyrus_communis | pycom09g11710 pycom17g18980 |
| rosa_chinensis | RchiOBHm_Chr2g0141111 |
| rosa_laevigata | RLG00000019915 |
| rosa_multiflora | Rmu_sc0006556.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00104200 |
| rosa_rugosa | Rorug02G0367200 Rorug02G0367300 Rorug02G0367400 |
| rosa_samantha | Rh2AG418200 Rh2BG428200 Rh2CG404600 Rh2DG438000 |
| rosa_wichuraiana | Rw0G019790 Rw2G034300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1566 |
| AccBSI | CCGCTC | 1 cut(s) | 547 |
| AccI | GTMKAC | 1 cut(s) | 694 |
| AciI | CCGC | 6 cut(s) | 11, 547, 864, 1183, 1395, 1471 |
| AclWI | GGATC | 3 cut(s) | 119, 780, 1019 |
| AcsI | RAATTY | 6 cut(s) | 47, 380, 759, 841, 964, 1009 |
| AcuI | CTGAAG | 2 cut(s) | 1272, 1314 |
| AcyI | GRCGYC | 1 cut(s) | 1841 |
| AdeI | CACNNNGTG | 1 cut(s) | 1667 |
| AfeI | AGCGCT | 1 cut(s) | 1061 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 237, 404, 1202, 1629 |
| AflII | CTTAAG | 3 cut(s) | 817, 824, 1063 |
| AjnI | CCWGG | 2 cut(s) | 209, 1699 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1781, 1813 |
| Alw21I | GWGCWC | 2 cut(s) | 615, 801 |
| Alw26I | GTCTC | 6 cut(s) | 101, 446, 510, 590, 665, 1669 |
| AlwI | GGATC | 3 cut(s) | 119, 780, 1019 |
| Ama87I | CYCGRG | 2 cut(s) | 1372, 1602 |
| Aor51HI | AGCGCT | 1 cut(s) | 1061 |
| AoxI | GGCC | 3 cut(s) | 57, 394, 580 |
| ApeKI | GCWGC | 3 cut(s) | 860, 1267, 1547 |
| ApoI | RAATTY | 6 cut(s) | 47, 380, 759, 841, 964, 1009 |
| AseI | ATTAAT | 1 cut(s) | 870 |
| AspLEI | GCGC | 1 cut(s) | 1062 |
| AspS9I | GGNCC | 3 cut(s) | 395, 559, 1559 |
| AsuHPI | GGTGA | 2 cut(s) | 929, 1813 |
| AvaI | CYCGRG | 2 cut(s) | 1372, 1602 |
| AvaII | GGWCC | 2 cut(s) | 559, 1559 |
| AxyI | CCTNAGG | 2 cut(s) | 1148, 1563 |
| BanII | GRGCYC | 1 cut(s) | 615 |
| BbsI | GAAGAC | 2 cut(s) | 267, 1829 |
| Bbv12I | GWGCWC | 2 cut(s) | 615, 801 |
| BbvI | GCAGC | 3 cut(s) | 847, 1279, 1559 |
| BccI | CCATC | 2 cut(s) | 1335, 1620 |
| BciT130I | CCWGG | 2 cut(s) | 211, 1701 |
| BciVI | GTATCC | 2 cut(s) | 139, 1651 |
| BclI | TGATCA | 3 cut(s) | 1399, 1489, 1765 |
| BcoDI | GTCTC | 6 cut(s) | 101, 446, 510, 590, 665, 1669 |
| BfaI | CTAG | 6 cut(s) | 237, 497, 569, 698, 750, 1004 |
| BfmI | CTRYAG | 1 cut(s) | 1782 |
| BfoI | RGCGCY | 1 cut(s) | 1063 |
| BfrI | CTTAAG | 3 cut(s) | 817, 824, 1063 |
| BfuI | GTATCC | 2 cut(s) | 139, 1651 |
| BglII | AGATCT | 2 cut(s) | 813, 1615 |
| BisI | GCNGC | 5 cut(s) | 548, 861, 864, 1268, 1548 |
| BlpI | GCTNAGC | 3 cut(s) | 648, 735, 795 |
| BlsI | GCNGC | 5 cut(s) | 549, 862, 865, 1269, 1549 |
| Bme1390I | CCNGG | 2 cut(s) | 211, 1701 |
| Bme18I | GGWCC | 2 cut(s) | 559, 1559 |
| BmeT110I | CYCGRG | 2 cut(s) | 1372, 1602 |
| BmgT120I | GGNCC | 3 cut(s) | 395, 559, 1559 |
| BmiI | GGNNCC | 1 cut(s) | 397 |
| BmrFI | CCNGG | 2 cut(s) | 211, 1701 |
| BmrI | ACTGGG | 1 cut(s) | 1845 |
| BmsI | GCATC | 5 cut(s) | 254, 559, 756, 947, 1886 |
| BmuI | ACTGGG | 1 cut(s) | 1845 |
| BpiI | GAAGAC | 2 cut(s) | 267, 1829 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1457 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 648, 735, 795 |
| BpuEI | CTTGAG | 5 cut(s) | 575, 647, 761, 1246, 1450 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1345 |
| BsaHI | GRCGYC | 1 cut(s) | 1841 |
| BsaJI | CCNNGG | 6 cut(s) | 60, 179, 231, 458, 1699, 1700 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 112, 142 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 237, 404, 1202, 1629 |
| Bse1I | ACTGG | 4 cut(s) | 303, 562, 1207, 1840 |
| Bse21I | CCTNAGG | 2 cut(s) | 1148, 1563 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1345 |
| BseBI | CCWGG | 2 cut(s) | 211, 1701 |
| BseDI | CCNNGG | 6 cut(s) | 60, 179, 231, 458, 1699, 1700 |
| BseGI | GGATG | 3 cut(s) | 196, 299, 1346 |
| BseJI | GATNNNNATC | 1 cut(s) | 1345 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 237, 404, 1202, 1629 |
| BseNI | ACTGG | 4 cut(s) | 303, 562, 1207, 1840 |
| BseRI | GAGGAG | 2 cut(s) | 120, 1645 |
| BseXI | GCAGC | 3 cut(s) | 847, 1279, 1559 |
| BshFI | GGCC | 3 cut(s) | 59, 396, 582 |
| BsiHKAI | GWGCWC | 2 cut(s) | 615, 801 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1372, 1602 |
| BslFI | GGGAC | 3 cut(s) | 717, 1235, 1852 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 237, 404, 1202, 1629 |
| BsmAI | GTCTC | 6 cut(s) | 101, 446, 510, 590, 665, 1669 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsmFI | GGGAC | 3 cut(s) | 717, 1235, 1852 |
| BsnI | GGCC | 3 cut(s) | 59, 396, 582 |
| BsoBI | CYCGRG | 2 cut(s) | 1372, 1602 |
| Bsp1286I | GDGCHC | 2 cut(s) | 615, 801 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 648, 735, 795 |
| BspACI | CCGC | 6 cut(s) | 11, 547, 864, 1183, 1395, 1471 |
| BspANI | GGCC | 3 cut(s) | 59, 396, 582 |
| BspHI | TCATGA | 2 cut(s) | 490, 1768 |
| BspLI | GGNNCC | 1 cut(s) | 397 |
| BspMAI | CTGCAG | 1 cut(s) | 1786 |
| BspPI | GGATC | 3 cut(s) | 119, 780, 1019 |
| BspQI | GCTCTTC | 1 cut(s) | 145 |
| BspTI | CTTAAG | 3 cut(s) | 817, 824, 1063 |
| BsrBI | CCGCTC | 1 cut(s) | 547 |
| BsrI | ACTGG | 4 cut(s) | 303, 562, 1207, 1840 |
| BssECI | CCNNGG | 6 cut(s) | 60, 179, 231, 458, 1699, 1700 |
| BssNI | GRCGYC | 1 cut(s) | 1841 |
| BssT1I | CCWWGG | 3 cut(s) | 60, 231, 458 |
| Bst2UI | CCWGG | 2 cut(s) | 211, 1701 |
| Bst4CI | ACNGT | 3 cut(s) | 224, 692, 1213 |
| Bst6I | CTCTTC | 4 cut(s) | 42, 145, 921, 1248 |
| BstACI | GRCGYC | 1 cut(s) | 1841 |
| BstAFI | CTTAAG | 3 cut(s) | 817, 824, 1063 |
| BstC8I | GCNNGC | 5 cut(s) | 394, 936, 1165, 1454, 1845 |
| BstF5I | GGATG | 3 cut(s) | 196, 299, 1346 |
| BstH2I | RGCGCY | 1 cut(s) | 1063 |
| BstHHI | GCGC | 1 cut(s) | 1062 |
| BstMAI | GTCTC | 6 cut(s) | 101, 446, 510, 590, 665, 1669 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 242, 752, 898 |
| BstNI | CCWGG | 2 cut(s) | 211, 1701 |
| BstSCI | CCNGG | 2 cut(s) | 209, 1699 |
| BstSFI | CTRYAG | 1 cut(s) | 1782 |
| BstV1I | GCAGC | 3 cut(s) | 847, 1279, 1559 |
| BstV2I | GAAGAC | 2 cut(s) | 267, 1829 |
| BstX2I | RGATCY | 4 cut(s) | 785, 813, 1024, 1615 |
| BstYI | RGATCY | 4 cut(s) | 785, 813, 1024, 1615 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1148, 1563 |
| BsuI | GTATCC | 2 cut(s) | 139, 1651 |
| BsuRI | GGCC | 3 cut(s) | 59, 396, 582 |
| BtsCI | GGATG | 3 cut(s) | 196, 299, 1346 |
| BtsI | GCAGTG | 1 cut(s) | 1672 |
| BtsIMutI | CAGTG | 4 cut(s) | 289, 1290, 1672, 1833 |
| Cac8I | GCNNGC | 5 cut(s) | 394, 936, 1165, 1454, 1845 |
| CciI | TCATGA | 2 cut(s) | 490, 1768 |
| CfoI | GCGC | 1 cut(s) | 1062 |
| Cfr13I | GGNCC | 3 cut(s) | 395, 559, 1559 |
| CseI | GACGC | 1 cut(s) | 1849 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 711, 746 |
| CviAII | CATG | 6 cut(s) | 491, 520, 719, 1487, 1646, 1769 |
| DraIII | CACNNNGTG | 1 cut(s) | 1667 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1566 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1566 |
| Eam1104I | CTCTTC | 4 cut(s) | 42, 145, 921, 1248 |
| EarI | CTCTTC | 4 cut(s) | 42, 145, 921, 1248 |
| Ecl136II | GAGCTC | 1 cut(s) | 613 |
| Eco130I | CCWWGG | 3 cut(s) | 60, 231, 458 |
| Eco24I | GRGCYC | 1 cut(s) | 615 |
| Eco47I | GGWCC | 2 cut(s) | 559, 1559 |
| Eco47III | AGCGCT | 1 cut(s) | 1061 |
| Eco53kI | GAGCTC | 1 cut(s) | 613 |
| Eco57I | CTGAAG | 2 cut(s) | 1272, 1314 |
| Eco81I | CCTNAGG | 2 cut(s) | 1148, 1563 |
| Eco88I | CYCGRG | 2 cut(s) | 1372, 1602 |
| EcoICRI | GAGCTC | 1 cut(s) | 613 |
| EcoRII | CCWGG | 2 cut(s) | 209, 1699 |
| EcoT14I | CCWWGG | 3 cut(s) | 60, 231, 458 |
| EcoT38I | GRGCYC | 1 cut(s) | 615 |
| ErhI | CCWWGG | 3 cut(s) | 60, 231, 458 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FaeI | CATG | 6 cut(s) | 494, 523, 722, 1490, 1649, 1772 |
| FaqI | GGGAC | 3 cut(s) | 717, 1235, 1852 |
| FatI | CATG | 6 cut(s) | 490, 519, 718, 1486, 1645, 1768 |
| FauI | CCCGC | 1 cut(s) | 1464 |
| FauNDI | CATATG | 1 cut(s) | 1522 |
| FbaI | TGATCA | 3 cut(s) | 1399, 1489, 1765 |
| FblI | GTMKAC | 1 cut(s) | 694 |
| Fnu4HI | GCNGC | 5 cut(s) | 548, 861, 864, 1268, 1548 |
| FokI | GGATG | 3 cut(s) | 203, 286, 1333 |
| FriOI | GRGCYC | 1 cut(s) | 615 |
| Fsp4HI | GCNGC | 5 cut(s) | 548, 861, 864, 1268, 1548 |
| FspBI | CTAG | 6 cut(s) | 237, 497, 569, 698, 750, 1004 |
| GlaI | GCGC | 1 cut(s) | 1061 |
| GluI | GCNGC | 5 cut(s) | 548, 861, 864, 1268, 1548 |
| HaeII | RGCGCY | 1 cut(s) | 1063 |
| HaeIII | GGCC | 3 cut(s) | 59, 396, 582 |
| HgaI | GACGC | 1 cut(s) | 1849 |
| HhaI | GCGC | 1 cut(s) | 1062 |
| Hin1I | GRCGYC | 1 cut(s) | 1841 |
| Hin1II | CATG | 6 cut(s) | 494, 523, 722, 1490, 1649, 1772 |
| Hin6I | GCGC | 1 cut(s) | 1060 |
| HinP1I | GCGC | 1 cut(s) | 1060 |
| HindIII | AAGCTT | 5 cut(s) | 530, 650, 708, 1454, 1815 |
| HphI | GGTGA | 2 cut(s) | 929, 1813 |
| Hpy166II | GTNNAC | 3 cut(s) | 695, 1144, 1559 |
| Hpy8I | GTNNAC | 3 cut(s) | 695, 1144, 1559 |
| HpyAV | CCTTC | 6 cut(s) | 102, 181, 891, 1289, 1370, 1724 |
| HpyCH4III | ACNGT | 3 cut(s) | 224, 692, 1213 |
| HpyCH4IV | ACGT | 2 cut(s) | 1128, 1171 |
| HpyCH4V | TGCA | 7 cut(s) | 245, 297, 722, 847, 955, 1784, 1811 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 242, 752, 898 |
| HpySE526I | ACGT | 2 cut(s) | 1128, 1171 |
| Hsp92I | GRCGYC | 1 cut(s) | 1841 |
| Hsp92II | CATG | 6 cut(s) | 494, 523, 722, 1490, 1649, 1772 |
| HspAI | GCGC | 1 cut(s) | 1060 |
| Ksp22I | TGATCA | 3 cut(s) | 1399, 1489, 1765 |
| LguI | GCTCTTC | 1 cut(s) | 145 |
| LmnI | GCTCC | 4 cut(s) | 544, 610, 618, 1057 |
| Lsp1109I | GCAGC | 3 cut(s) | 847, 1279, 1559 |
| LweI | GCATC | 5 cut(s) | 254, 559, 756, 947, 1886 |
| MaeI | CTAG | 6 cut(s) | 237, 497, 569, 698, 750, 1004 |
| MaeII | ACGT | 2 cut(s) | 1128, 1171 |
| MaeIII | GTNAC | 2 cut(s) | 1316, 1574 |
| MbiI | CCGCTC | 1 cut(s) | 547 |
| MflI | RGATCY | 4 cut(s) | 785, 813, 1024, 1615 |
| MhlI | GDGCHC | 2 cut(s) | 615, 801 |
| MlyI | GAGTC | 6 cut(s) | 448, 680, 1324, 1364, 1642, 1766 |
| MmeI | TCCRAC | 1 cut(s) | 966 |
| MseI | TTAA | 9 cut(s) | 195, 336, 585, 771, 818, 825, 870, 887, 1064 |
| MslI | CAYNNNNRTG | 2 cut(s) | 269, 1683 |
| MspA1I | CMGCKG | 1 cut(s) | 1397 |
| MspCI | CTTAAG | 3 cut(s) | 817, 824, 1063 |
| MspR9I | CCNGG | 2 cut(s) | 211, 1701 |
| MvaI | CCWGG | 2 cut(s) | 211, 1701 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 242, 752, 898 |
| NdeI | CATATG | 1 cut(s) | 1522 |
| NlaIII | CATG | 6 cut(s) | 494, 523, 722, 1490, 1649, 1772 |
| NlaIV | GGNNCC | 1 cut(s) | 397 |
| NmeAIII | GCCGAG | 1 cut(s) | 160 |
| NmuCI | GTSAC | 1 cut(s) | 1316 |
| PaeR7I | CTCGAG | 1 cut(s) | 1602 |
| PagI | TCATGA | 2 cut(s) | 490, 1768 |
| PasI | CCCWGGG | 1 cut(s) | 1700 |
| PciSI | GCTCTTC | 1 cut(s) | 145 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1114 |
| PfeI | GAWTC | 6 cut(s) | 880, 989, 1331, 1649, 1742, 1778 |
| PkrI | GCNGC | 5 cut(s) | 549, 862, 865, 1269, 1549 |
| PleI | GAGTC | 6 cut(s) | 448, 679, 1323, 1364, 1641, 1766 |
| PpsI | GAGTC | 6 cut(s) | 448, 679, 1323, 1364, 1641, 1766 |
| PshBI | ATTAAT | 1 cut(s) | 870 |
| Psp124BI | GAGCTC | 1 cut(s) | 615 |
| Psp6I | CCWGG | 2 cut(s) | 209, 1699 |
| PspGI | CCWGG | 2 cut(s) | 209, 1699 |
| PspN4I | GGNNCC | 1 cut(s) | 397 |
| PspPI | GGNCC | 3 cut(s) | 395, 559, 1559 |
| PstI | CTGCAG | 1 cut(s) | 1786 |
| PsuI | RGATCY | 4 cut(s) | 785, 813, 1024, 1615 |
| RseI | CAYNNNNRTG | 2 cut(s) | 269, 1683 |
| SacI | GAGCTC | 1 cut(s) | 615 |
| SapI | GCTCTTC | 1 cut(s) | 145 |
| SaqAI | TTAA | 9 cut(s) | 195, 336, 585, 771, 818, 825, 870, 887, 1064 |
| SatI | GCNGC | 5 cut(s) | 548, 861, 864, 1268, 1548 |
| Sau96I | GGNCC | 3 cut(s) | 395, 559, 1559 |
| SchI | GAGTC | 6 cut(s) | 448, 680, 1324, 1364, 1642, 1766 |
| ScrFI | CCNGG | 2 cut(s) | 211, 1701 |
| SduI | GDGCHC | 2 cut(s) | 615, 801 |
| SfaNI | GCATC | 5 cut(s) | 254, 559, 756, 947, 1886 |
| SfcI | CTRYAG | 1 cut(s) | 1782 |
| Sfr274I | CTCGAG | 1 cut(s) | 1602 |
| SinI | GGWCC | 2 cut(s) | 559, 1559 |
| SlaI | CTCGAG | 1 cut(s) | 1602 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 269, 1683 |
| SmlI | CTYRAG | 9 cut(s) | 554, 662, 740, 817, 824, 1063, 1225, 1429, 1602 |
| SmoI | CTYRAG | 9 cut(s) | 554, 662, 740, 817, 824, 1063, 1225, 1429, 1602 |
| SsiI | CCGC | 6 cut(s) | 11, 547, 864, 1183, 1395, 1471 |
| SspI | AATATT | 1 cut(s) | 1283 |
| SspMI | CTAG | 6 cut(s) | 237, 497, 569, 698, 750, 1004 |
| SstI | GAGCTC | 1 cut(s) | 615 |
| StyD4I | CCNGG | 2 cut(s) | 209, 1699 |
| StyI | CCWWGG | 3 cut(s) | 60, 231, 458 |
| TaaI | ACNGT | 3 cut(s) | 224, 692, 1213 |
| TaiI | ACGT | 2 cut(s) | 1131, 1174 |
| TaqI | TCGA | 4 cut(s) | 535, 669, 1117, 1603 |
| TauI | GCSGC | 2 cut(s) | 550, 866 |
| TfiI | GAWTC | 6 cut(s) | 880, 989, 1331, 1649, 1742, 1778 |
| Tru1I | TTAA | 9 cut(s) | 195, 336, 585, 771, 818, 825, 870, 887, 1064 |
| Tru9I | TTAA | 9 cut(s) | 195, 336, 585, 771, 818, 825, 870, 887, 1064 |
| TscAI | CASTG | 4 cut(s) | 289, 1297, 1672, 1840 |
| TseFI | GTSAC | 1 cut(s) | 1316 |
| TseI | GCWGC | 3 cut(s) | 860, 1267, 1547 |
| Tsp45I | GTSAC | 1 cut(s) | 1316 |
| TspDTI | ATGAA | 8 cut(s) | 171, 273, 393, 434, 870, 1092, 1395, 1575 |
| TspRI | CASTG | 4 cut(s) | 289, 1297, 1672, 1840 |
| Vha464I | CTTAAG | 3 cut(s) | 817, 824, 1063 |
| VpaK11BI | GGWCC | 2 cut(s) | 559, 1559 |
| VspI | ATTAAT | 1 cut(s) | 870 |
| XapI | RAATTY | 6 cut(s) | 47, 380, 759, 841, 964, 1009 |
| XhoI | CTCGAG | 1 cut(s) | 1602 |
| XmiI | GTMKAC | 1 cut(s) | 694 |
| XspI | CTAG | 6 cut(s) | 237, 497, 569, 698, 750, 1004 |