AT1G52140

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012844
Physical Location & Seq
Reverse (-)
19407259 .. 19408319
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52140.1

Sequence Viewer

Length: 627 bp
ATGGATCAAAACGTACCAATAAGCAAGAAGCTATGGAACATCGTACGTTTTCTCTTGTACATGATCCGCAAAGGCGTCTCAAAAAACAAACTCATCGCTGACTTCAACGCCACTCTCAAACGTGGCAAGAACCTCATGTTCCACCAACGTCGTCGTGTCCACGCCGGTTCCACCGCCTCAGCCGCTCTAAACGCTACTTCAGCCACCGCGTCATCGCGACAAGAGTACGAGTTTAGCTGCAGCAACACTCCAAACTATTCATTCCCTTTCTCTAATATGGCTTTCATGAGGAAAAAGAGTCACAATAATCTCTTCACGTGTGGTCAAACGCCTCAGACGCTTGACGACGACGTAGCCGCCGCTAGAGCCGTTCTTGAGCTTCTTAACGGCGTTGGAGAGAAAGGAAACGTCACGCCGGCAGATTTAACGGTGGCTTTGTCTCCTTATTTCCCCGGTTTTGGACAGACTCCATTGGTTAGACCGTTAAGAGTAACGGACTCACCGTTTCCGTTAACGCCGGAAAATGGTGATGTGGCTAATGGACACGTTGACAAAGCAGCTGATGATTTTATAAAGAAGTTTTATAAGAACTTGAATCAGCAGAAAAAAATGATTGAGTTCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

208

Amino Acids

23.17

Weight (kDa)

9.72

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52140 AT3G16330
fragaria_vesca FvH4_6g32270
malus_domestica MD09G1205200.v1.1 MD17G1185000.v1.1
prunus_persica Prupe.3G060500_v2.0.a1
pyrus_communis pycom09g12180 pycom17g19490
rosa_chinensis RchiOBHm_Chr2g0140151
rosa_laevigata RLG00000019856
rosa_multiflora Rmu_sc0003244.1_g000017
rosa_roxburghii Rroxscaffold_2G00105000
rosa_rugosa Rorug02G0361400
rosa_samantha Rh2AG412200 Rh2BG422600 Rh2CG398300 Rh2DG431900
rosa_wichuraiana Rw2G033780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 572, 585
AccBSI CCGCTC 1 cut(s) 185
AccII CGCG 2 cut(s) 209, 217
AciI CCGC 6 cut(s) 67, 174, 183, 207, 357, 360
AclWI GGATC 2 cut(s) 12, 58
AcuI CTGAAG 1 cut(s) 183
AcvI CACGTG 1 cut(s) 318
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 4 cut(s) 15, 45, 59, 227
AfiI CCNNNNNNNGG 2 cut(s) 458, 524
AflIII ACRYGT 2 cut(s) 317, 544
AgsI TTSAA 2 cut(s) 106, 595
AluBI AGCT 5 cut(s) 31, 237, 379, 560, 624
AluI AGCT 5 cut(s) 31, 237, 379, 560, 624
Alw26I GTCTC 2 cut(s) 82, 444
AlwI GGATC 2 cut(s) 12, 58
ApeKI GCWGC 3 cut(s) 237, 240, 557
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 2 cut(s) 492, 539
BbrPI CACGTG 1 cut(s) 318
BbvCI CCTCAGC 1 cut(s) 178
BbvI GCAGC 3 cut(s) 224, 252, 569
BceAI ACGGC 2 cut(s) 353, 403
BcnI CCSGG 1 cut(s) 453
BcoDI GTCTC 2 cut(s) 82, 444
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 6 cut(s) 183, 238, 241, 357, 360, 558
BlsI GCNGC 6 cut(s) 184, 239, 242, 358, 361, 559
Bme1390I CCNGG 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 453
Bpu10I CCTNAGC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 453
BsaAI YACGTR 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 451
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 524
Bse118I RCCGGY 2 cut(s) 164, 415
BseDI CCNNGG 1 cut(s) 451
BseLI CCNNNNNNNGG 2 cut(s) 458, 524
BseMII CTCAG 2 cut(s) 192, 347
BseXI GCAGC 3 cut(s) 224, 252, 569
Bsh1236I CGCG 2 cut(s) 209, 217
BsiSI CCGG 4 cut(s) 165, 416, 453, 518
BsiWI CGTACG 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 458, 524
BsmAI GTCTC 2 cut(s) 82, 444
BsmBI CGTCTC 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 2 cut(s) 4, 63
Bsp68I TCGCGA 1 cut(s) 217
BspACI CCGC 6 cut(s) 67, 174, 183, 207, 357, 360
BspCNI CTCAG 2 cut(s) 191, 346
BspFNI CGCG 2 cut(s) 209, 217
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 242
BspPI GGATC 2 cut(s) 12, 58
BsrBI CCGCTC 1 cut(s) 185
BsrFI RCCGGY 2 cut(s) 164, 415
BsrGI TGTACA 1 cut(s) 57
BssAI RCCGGY 2 cut(s) 164, 415
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 2 cut(s) 4, 63
BssNI GRCGYC 1 cut(s) 75
Bst4CI ACNGT 3 cut(s) 430, 483, 504
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 75
BstAUI TGTACA 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 2 cut(s) 178, 333
BstFNI CGCG 2 cut(s) 209, 217
BstKTI GATC 2 cut(s) 7, 66
BstMAI GTCTC 2 cut(s) 82, 444
BstMBI GATC 2 cut(s) 4, 63
BstMWI GCNNNNNNNGC 5 cut(s) 182, 191, 200, 337, 365
BstSCI CCNGG 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 238
BstUI CGCG 2 cut(s) 209, 217
BstV1I GCAGC 3 cut(s) 224, 252, 569
BtgZI GCGATG 2 cut(s) 79, 198
BtuMI TCGCGA 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 417
CciI TCATGA 1 cut(s) 285
Cfr10I RCCGGY 2 cut(s) 164, 415
CseI GACGC 3 cut(s) 64, 198, 346
Csp6I GTAC 4 cut(s) 14, 44, 58, 226
CviAII CATG 3 cut(s) 61, 136, 286
CviQI GTAC 4 cut(s) 14, 44, 58, 226
DdeI CTNAG 2 cut(s) 178, 333
DpnI GATC 2 cut(s) 6, 65
DpnII GATC 2 cut(s) 4, 63
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 183
Eco72I CACGTG 1 cut(s) 318
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 3 cut(s) 64, 139, 289
FaiI YATR 7 cut(s) 34, 62, 137, 278, 287, 572, 585
FatI CATG 3 cut(s) 60, 135, 285
Fnu4HI GCNGC 6 cut(s) 183, 238, 241, 357, 360, 558
Fsp4HI GCNGC 6 cut(s) 183, 238, 241, 357, 360, 558
FspBI CTAG 1 cut(s) 363
GluI GCNGC 6 cut(s) 183, 238, 241, 357, 360, 558
HapII CCGG 4 cut(s) 165, 416, 453, 518
HgaI GACGC 3 cut(s) 64, 198, 346
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 3 cut(s) 64, 139, 289
HincII GTYRAC 2 cut(s) 513, 550
HindII GTYRAC 2 cut(s) 513, 550
HinfI GANTC 4 cut(s) 298, 466, 497, 595
HpaI GTTAAC 1 cut(s) 513
HpaII CCGG 4 cut(s) 165, 416, 453, 518
HphI GGTGA 2 cut(s) 492, 539
Hpy166II GTNNAC 3 cut(s) 160, 513, 550
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 3 cut(s) 216, 286, 374
Hpy8I GTNNAC 3 cut(s) 160, 513, 550
Hpy99I CGWCG 4 cut(s) 153, 156, 350, 353
HpyCH4III ACNGT 3 cut(s) 430, 483, 504
HpyCH4IV ACGT 8 cut(s) 12, 46, 121, 148, 317, 351, 408, 546
HpyCH4V TGCA 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 5 cut(s) 182, 191, 200, 337, 365
HpyF3I CTNAG 2 cut(s) 178, 333
HpySE526I ACGT 8 cut(s) 12, 46, 121, 148, 317, 351, 408, 546
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 3 cut(s) 64, 139, 289
KroI GCCGGC 1 cut(s) 415
KroNI GCCGGC 1 cut(s) 417
KspAI GTTAAC 1 cut(s) 513
Kzo9I GATC 2 cut(s) 4, 63
LpnPI CCDG 4 cut(s) 178, 429, 466, 531
Lsp1109I GCAGC 3 cut(s) 224, 252, 569
MaeI CTAG 1 cut(s) 363
MaeII ACGT 8 cut(s) 12, 46, 121, 148, 317, 351, 408, 546
MaeIII GTNAC 3 cut(s) 299, 409, 490
MalI GATC 2 cut(s) 6, 65
MbiI CCGCTC 1 cut(s) 185
MboI GATC 2 cut(s) 4, 63
MboII GAAGA 1 cut(s) 304
MlyI GAGTC 3 cut(s) 307, 460, 491
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 4 cut(s) 143, 187, 282, 342
MroNI GCCGGC 1 cut(s) 415
MseI TTAA 4 cut(s) 384, 425, 485, 512
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 4 cut(s) 165, 416, 453, 518
MspR9I CCNGG 1 cut(s) 453
MvnI CGCG 2 cut(s) 209, 217
MwoI GCNNNNNNNGC 5 cut(s) 182, 191, 200, 337, 365
NaeI GCCGGC 1 cut(s) 417
NciI CCSGG 1 cut(s) 453
NdeII GATC 2 cut(s) 4, 63
NgoMIV GCCGGC 1 cut(s) 415
NlaIII CATG 3 cut(s) 64, 139, 289
NlaIV GGNNCC 1 cut(s) 169
NmuCI GTSAC 2 cut(s) 299, 409
NruI TCGCGA 1 cut(s) 217
PagI TCATGA 1 cut(s) 285
PcsI WCGNNNNNNNCGW 1 cut(s) 500
PdiI GCCGGC 1 cut(s) 417
PfeI GAWTC 1 cut(s) 595
Pfl23II CGTACG 1 cut(s) 43
PkrI GCNGC 6 cut(s) 184, 239, 242, 358, 361, 559
PleI GAGTC 3 cut(s) 306, 460, 491
PmaCI CACGTG 1 cut(s) 318
PmlI CACGTG 1 cut(s) 318
PpsI GAGTC 3 cut(s) 306, 460, 491
Ppu21I YACGTR 1 cut(s) 318
PsiI TTATAA 2 cut(s) 572, 585
PspCI CACGTG 1 cut(s) 318
PspLI CGTACG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 169
PstI CTGCAG 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 560
RruI TCGCGA 1 cut(s) 217
RsaI GTAC 4 cut(s) 15, 45, 59, 227
RsaNI GTAC 4 cut(s) 14, 44, 58, 226
SaqAI TTAA 4 cut(s) 384, 425, 485, 512
SatI GCNGC 6 cut(s) 183, 238, 241, 357, 360, 558
Sau3AI GATC 2 cut(s) 4, 63
SchI GAGTC 3 cut(s) 307, 460, 491
ScrFI CCNGG 1 cut(s) 453
SfcI CTRYAG 1 cut(s) 238
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
SsiI CCGC 6 cut(s) 67, 174, 183, 207, 357, 360
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 451
TaaI ACNGT 3 cut(s) 430, 483, 504
TaiI ACGT 8 cut(s) 15, 49, 124, 151, 320, 354, 411, 549
TatI WGTACW 1 cut(s) 57
TauI GCSGC 3 cut(s) 185, 359, 362
TfiI GAWTC 1 cut(s) 595
Tru1I TTAA 4 cut(s) 384, 425, 485, 512
Tru9I TTAA 4 cut(s) 384, 425, 485, 512
TseFI GTSAC 2 cut(s) 299, 409
TseI GCWGC 3 cut(s) 237, 240, 557
Tsp45I GTSAC 2 cut(s) 299, 409
TspDTI ATGAA 2 cut(s) 249, 274
TspGWI ACGGA 2 cut(s) 498, 509
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.