AT3G16330

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012844
Physical Location & Seq
Forward (+)
5535124 .. 5536237
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16330.1

Sequence Viewer

Length: 618 bp
ATGGAGAAGAATATATCAATAAGCAAGAAGCTAGGGAACATTGTACGTTTTGTCTTGTACATGTTACACAAAGGCATTTCTAAGCAAAAGCTCCTAGCCGACTTTAATGCCACTCTCAAACGCGGCAAGAATCTCATGTTCCACAACCGCCGCCGTGTCCCAGGCTCGGCTGTTGCGTCCCATCCACAGAACGAGTACGAGTTTAGCTGCAGCGACACTCCTAACTACACGTTCCCCTTCAACATGGCTGCCTTCAAGAAGAAGAGCCACCACAACAGCCTCTTCTCCTGTGGTCAAGCGCCACCGACCCTTGATGACGACACTTCCGTCTCCAGAGCCGTTCTAGAGCTGCTCAACAGCGGTGGAGATCATGATCAGGGAAGTAACACGCCGGCTTTTTCCATTGAGGCCTTGACGGCGTTATCTCCCTACCTGCCGGGATTTGGACGGAGTACTTCGTCCGTGAGGCCTTTACGGGTAACGGACTCACCATTCCCGTTAAGAGAAGAGGGTGACGTGGCTAACGGACATGTGGACAAGGCAGCGGATGAGTTTATAAAGAAGTTTTACAAGAACTTGTATCAGCAAAAGAAGATGATTGAGTCCTCACCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

205

Amino Acids

22.86

Weight (kDa)

9.39

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52140 AT3G16330
fragaria_vesca FvH4_6g32270
malus_domestica MD09G1205200.v1.1 MD17G1185000.v1.1
prunus_persica Prupe.3G060500_v2.0.a1
pyrus_communis pycom09g12180 pycom17g19490
rosa_chinensis RchiOBHm_Chr2g0140151
rosa_laevigata RLG00000019856
rosa_multiflora Rmu_sc0003244.1_g000017
rosa_roxburghii Rroxscaffold_2G00105000
rosa_rugosa Rorug02G0361400
rosa_samantha Rh2AG412200 Rh2BG422600 Rh2CG398300 Rh2DG431900
rosa_wichuraiana Rw2G033780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 557
AasI GACNNNNNNGTC 1 cut(s) 326
Acc36I ACCTGC 1 cut(s) 441
AccII CGCG 1 cut(s) 123
AciI CCGC 5 cut(s) 123, 148, 151, 360, 545
AfaI GTAC 4 cut(s) 45, 59, 197, 454
AfiI CCNNNNNNNGG 2 cut(s) 166, 443
AflIII ACRYGT 3 cut(s) 60, 228, 529
AgsI TTSAA 2 cut(s) 241, 256
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 4 cut(s) 31, 91, 207, 349
AluI AGCT 4 cut(s) 31, 91, 207, 349
Alw26I GTCTC 1 cut(s) 334
AoxI GGCC 2 cut(s) 408, 467
ApeKI GCWGC 5 cut(s) 207, 210, 248, 349, 542
AspLEI GCGC 1 cut(s) 301
AsuC2I CCSGG 1 cut(s) 438
AsuHPI GGTGA 3 cut(s) 480, 524, 600
BbvI GCAGC 5 cut(s) 194, 222, 235, 336, 554
BccI CCATC 1 cut(s) 189
BceAI ACGGC 3 cut(s) 138, 323, 432
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 373
BcnI CCSGG 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 3 cut(s) 32, 95, 344
BfmI CTRYAG 1 cut(s) 208
BfoI RGCGCY 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 441
BglI GCCNNNNNGGC 1 cut(s) 416
BisI GCNGC 7 cut(s) 124, 151, 208, 211, 249, 350, 543
BlsI GCNGC 7 cut(s) 125, 152, 209, 212, 250, 351, 544
BmcAI AGTACT 1 cut(s) 454
Bme1390I CCNGG 2 cut(s) 162, 438
BmgBI CACGTC 1 cut(s) 517
BmrFI CCNGG 2 cut(s) 162, 438
BpmI CTGGAG 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 438
BsaBI GATNNNNATC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 443
Bse118I RCCGGY 1 cut(s) 391
Bse8I GATNNNNATC 1 cut(s) 372
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 181, 553
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 2 cut(s) 166, 443
BseXI GCAGC 5 cut(s) 194, 222, 235, 336, 554
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 410, 469
BsiSI CCGG 2 cut(s) 392, 437
BslFI GGGAC 2 cut(s) 143, 163
BslI CCNNNNNNNGG 2 cut(s) 166, 443
BsmAI GTCTC 1 cut(s) 334
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 2 cut(s) 143, 163
BsnI GGCC 2 cut(s) 410, 469
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 2 cut(s) 367, 373
BspACI CCGC 5 cut(s) 123, 148, 151, 360, 545
BspANI GGCC 2 cut(s) 410, 469
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 370
BspMAI CTGCAG 1 cut(s) 212
BspMI ACCTGC 1 cut(s) 441
BspQI GCTCTTC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 391
BsrGI TGTACA 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 367, 373
Bst2UI CCWGG 1 cut(s) 162
Bst6I CTCTTC 3 cut(s) 257, 287, 501
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 2 cut(s) 181, 553
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 2 cut(s) 370, 376
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 2 cut(s) 367, 373
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 2 cut(s) 64, 533
BstSCI CCNGG 2 cut(s) 160, 436
BstSFI CTRYAG 1 cut(s) 208
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 5 cut(s) 194, 222, 235, 336, 554
BsuRI GGCC 2 cut(s) 410, 469
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 2 cut(s) 181, 553
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 1 cut(s) 393
CciI TCATGA 1 cut(s) 370
CfoI GCGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 391
CseI GACGC 1 cut(s) 165
Csp6I GTAC 4 cut(s) 44, 58, 196, 453
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 5 cut(s) 61, 136, 244, 371, 530
CviQI GTAC 4 cut(s) 44, 58, 196, 453
DdeI CTNAG 1 cut(s) 81
DpnI GATC 2 cut(s) 369, 375
DpnII GATC 2 cut(s) 367, 373
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
Eam1104I CTCTTC 3 cut(s) 257, 287, 501
EarI CTCTTC 3 cut(s) 257, 287, 501
Eco147I AGGCCT 2 cut(s) 410, 469
EcoRII CCWGG 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 5 cut(s) 64, 139, 247, 374, 533
FaiI YATR 7 cut(s) 14, 62, 137, 245, 372, 531, 557
FaqI GGGAC 2 cut(s) 143, 163
FatI CATG 5 cut(s) 60, 135, 243, 370, 529
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 7 cut(s) 124, 151, 208, 211, 249, 350, 543
FokI GGATG 2 cut(s) 168, 560
Fsp4HI GCNGC 7 cut(s) 124, 151, 208, 211, 249, 350, 543
FspBI CTAG 3 cut(s) 32, 95, 344
GlaI GCGC 1 cut(s) 300
GluI GCNGC 7 cut(s) 124, 151, 208, 211, 249, 350, 543
GsuI CTGGAG 1 cut(s) 316
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 2 cut(s) 410, 469
HapII CCGG 2 cut(s) 392, 437
HgaI GACGC 1 cut(s) 165
HhaI GCGC 1 cut(s) 301
Hin1II CATG 5 cut(s) 64, 139, 247, 374, 533
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 3 cut(s) 130, 485, 602
HpaII CCGG 2 cut(s) 392, 437
HphI GGTGA 3 cut(s) 480, 524, 600
Hpy166II GTNNAC 1 cut(s) 535
Hpy188III TCNNGA 4 cut(s) 256, 333, 344, 371
Hpy8I GTNNAC 1 cut(s) 535
HpyAV CCTTC 2 cut(s) 247, 262
HpyCH4IV ACGT 3 cut(s) 46, 230, 516
HpyCH4V TGCA 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 3 cut(s) 46, 230, 516
Hsp92II CATG 5 cut(s) 64, 139, 247, 374, 533
HspAI GCGC 1 cut(s) 299
KroI GCCGGC 1 cut(s) 391
KroNI GCCGGC 1 cut(s) 393
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 367, 373
LguI GCTCTTC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 8 cut(s) 147, 174, 301, 346, 362, 405, 446, 450
Lsp1109I GCAGC 5 cut(s) 194, 222, 235, 336, 554
MaeI CTAG 3 cut(s) 32, 95, 344
MaeII ACGT 3 cut(s) 46, 230, 516
MaeIII GTNAC 4 cut(s) 63, 383, 478, 512
MalI GATC 2 cut(s) 369, 375
MboI GATC 2 cut(s) 367, 373
MboII GAAGA 6 cut(s) 19, 271, 274, 274, 518, 604
MluCI AATT 1 cut(s) 613
MlyI GAGTC 2 cut(s) 479, 611
MnlI CCTC 5 cut(s) 290, 400, 459, 502, 616
MroNI GCCGGC 1 cut(s) 391
MseI TTAA 3 cut(s) 105, 500, 616
MspA1I CMGCKG 2 cut(s) 360, 545
MspI CCGG 2 cut(s) 392, 437
MspR9I CCNGG 2 cut(s) 162, 438
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 416
NaeI GCCGGC 1 cut(s) 393
NciI CCSGG 1 cut(s) 438
NdeII GATC 2 cut(s) 367, 373
NgoMIV GCCGGC 1 cut(s) 391
NlaIII CATG 5 cut(s) 64, 139, 247, 374, 533
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 512
NspI RCATGY 2 cut(s) 64, 533
PagI TCATGA 1 cut(s) 370
PceI AGGCCT 2 cut(s) 410, 469
PciI ACATGT 2 cut(s) 60, 529
PciSI GCTCTTC 1 cut(s) 257
PcsI WCGNNNNNNNCGW 2 cut(s) 173, 324
PdiI GCCGGC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 7 cut(s) 125, 152, 209, 212, 250, 351, 544
PleI GAGTC 2 cut(s) 479, 610
PpsI GAGTC 2 cut(s) 479, 610
PscI ACATGT 2 cut(s) 60, 529
PsiI TTATAA 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PstI CTGCAG 1 cut(s) 212
RsaI GTAC 4 cut(s) 45, 59, 197, 454
RsaNI GTAC 4 cut(s) 44, 58, 196, 453
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 3 cut(s) 105, 500, 616
SatI GCNGC 7 cut(s) 124, 151, 208, 211, 249, 350, 543
Sau3AI GATC 2 cut(s) 367, 373
ScaI AGTACT 1 cut(s) 454
SchI GAGTC 2 cut(s) 479, 611
ScrFI CCNGG 2 cut(s) 162, 438
SetI ASST 9 cut(s) 33, 49, 93, 209, 233, 351, 435, 519, 613
SfcI CTRYAG 1 cut(s) 208
Sse9I AATT 1 cut(s) 613
SseBI AGGCCT 2 cut(s) 410, 469
SsiI CCGC 5 cut(s) 123, 148, 151, 360, 545
SspMI CTAG 3 cut(s) 32, 95, 344
StuI AGGCCT 2 cut(s) 410, 469
StyD4I CCNGG 2 cut(s) 160, 436
TaiI ACGT 3 cut(s) 49, 233, 519
TasI AATT 1 cut(s) 613
TatI WGTACW 2 cut(s) 57, 452
TauI GCSGC 2 cut(s) 126, 153
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 3 cut(s) 105, 500, 616
Tru9I TTAA 3 cut(s) 105, 500, 616
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 5 cut(s) 207, 210, 248, 349, 542
Tsp45I GTSAC 1 cut(s) 512
TspGWI ACGGA 5 cut(s) 316, 451, 463, 497, 540
XbaI TCTAGA 1 cut(s) 343
XceI RCATGY 2 cut(s) 64, 533
XspI CTAG 3 cut(s) 32, 95, 344
ZrmI AGTACT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.