Prupe.3G060500_v2.0.a1

Avr9 Cf-9 rapidly elicited protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012844
Physical Location & Seq
Reverse (-)
4357105 .. 4358154
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G060500.1

Sequence Viewer

Length: 624 bp
ATGGAACAAAATAATCTGCCGGTAGTGGCCAAGAAAATATGGAGCTTAGTACGTGTAGCTTTCTTCATGTTAAGAAAGGGCATTTCAAAGCGGAAGCTCCTCCTCGACCTCAACATGATGATGAAGCGTGGCAAGCTCGCCAGCAAAGCCCTAAGCAACCTCATGTTCCACCACCACCACCACCACCACAGCCAAAGCCACTCCCACCACTGCAGCGCCGCCTCCTCCGCCGCCCCTCGGGAGTACGAGTTCAGCTGCAGCAACACCCCCAACTACACCTTCCACCTCATGGGCAAGCGCCGCCACCAGAGCCACCACCACAACTTCTTTGCGTGTGCTCACGCGCCGCCCACTCAGGATGACGAGGTGGCAGCCGCTGGCGTCGTGAAGGCGGTGCTGGAGATGTTGAATAACGAAGTGATGGCTGCGGAGGCGGTGGCTTCGGTGGCAGCGTCACCGCTTCCCGGGTTCGGGAAGAGCCCCATGGTCCGCCAGCTGAGGATAACGGACTCTCCGTTTCCGTTGAGGGAGGCGGACGAGGACAGCCACGTGGACAAAGCGGCGGAGGAGTTTATAGAGAAGTTCTACAAGAATTTGTGGCAGCAGAACAGAATGCAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

208

Amino Acids

23.5

Weight (kDa)

9.17

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52140 AT3G16330
fragaria_vesca FvH4_6g32270
malus_domestica MD09G1205200.v1.1 MD17G1185000.v1.1
prunus_persica Prupe.3G060500_v2.0.a1
pyrus_communis pycom09g12180 pycom17g19490
rosa_chinensis RchiOBHm_Chr2g0140151
rosa_laevigata RLG00000019856
rosa_multiflora Rmu_sc0003244.1_g000017
rosa_roxburghii Rroxscaffold_2G00105000
rosa_rugosa Rorug02G0361400
rosa_samantha Rh2AG412200 Rh2BG422600 Rh2CG398300 Rh2DG431900
rosa_wichuraiana Rw2G033780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 289
AccII CGCG 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 592
AcvI CACGTG 1 cut(s) 550
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 2 cut(s) 51, 245
AfiI CCNNNNNNNGG 5 cut(s) 237, 289, 464, 470, 471
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 2 cut(s) 87, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 6 cut(s) 45, 59, 97, 136, 255, 496
AluI AGCT 6 cut(s) 45, 59, 97, 136, 255, 496
Alw21I GWGCWC 1 cut(s) 340
AlwNI CAGNNNCTG 1 cut(s) 377
Ama87I CYCGRG 2 cut(s) 237, 464
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 7 cut(s) 213, 255, 258, 371, 425, 449, 601
ApoI RAATTY 1 cut(s) 592
AspLEI GCGC 3 cut(s) 218, 300, 346
AspS9I GGNCC 1 cut(s) 487
AsuC2I CCSGG 2 cut(s) 465, 466
AsuHPI GGTGA 1 cut(s) 447
AvaI CYCGRG 2 cut(s) 237, 464
AvaII GGWCC 1 cut(s) 487
BalI TGGCCA 1 cut(s) 29
BanII GRGCYC 1 cut(s) 482
BbrPI CACGTG 1 cut(s) 550
Bbv12I GWGCWC 1 cut(s) 340
BbvCI CCTCAGC 1 cut(s) 497
BbvI GCAGC 7 cut(s) 225, 242, 270, 383, 412, 461, 613
BccI CCATC 1 cut(s) 415
BcnI CCSGG 2 cut(s) 465, 466
BfmI CTRYAG 2 cut(s) 211, 256
BfoI RGCGCY 2 cut(s) 219, 301
Bme1390I CCNGG 2 cut(s) 465, 466
Bme18I GGWCC 1 cut(s) 487
BmeT110I CYCGRG 2 cut(s) 237, 464
BmgT120I GGNCC 1 cut(s) 487
BmrFI CCNGG 2 cut(s) 465, 466
BpmI CTGGAG 1 cut(s) 419
Bpu10I CCTNAGC 2 cut(s) 152, 497
BpuMI CCSGG 2 cut(s) 465, 466
BsaAI YACGTR 2 cut(s) 53, 550
BsaHI GRCGYC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 236, 464, 483
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 496, 526
Bsc4I CCNNNNNNNGG 5 cut(s) 237, 289, 464, 470, 471
Bse118I RCCGGY 1 cut(s) 19
BseDI CCNNGG 3 cut(s) 236, 464, 483
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 5 cut(s) 237, 289, 464, 470, 471
BseMII CTCAG 2 cut(s) 368, 488
BseRI GAGGAG 4 cut(s) 89, 92, 214, 581
BseXI GCAGC 7 cut(s) 225, 242, 270, 383, 412, 461, 613
Bsh1236I CGCG 1 cut(s) 344
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 340
BsiHKCI CYCGRG 2 cut(s) 237, 464
BsiSI CCGG 2 cut(s) 20, 465
BslI CCNNNNNNNGG 5 cut(s) 237, 289, 464, 470, 471
BsmI GAATGC 1 cut(s) 618
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 2 cut(s) 237, 464
Bsp1286I GDGCHC 2 cut(s) 340, 482
Bsp19I CCATGG 1 cut(s) 483
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 367, 489
BspFNI CGCG 1 cut(s) 344
BspMAI CTGCAG 2 cut(s) 215, 260
BspQI GCTCTTC 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 3 cut(s) 236, 464, 483
BssNI GRCGYC 1 cut(s) 381
BssT1I CCWWGG 1 cut(s) 483
Bst6I CTCTTC 1 cut(s) 470
BstACI GRCGYC 1 cut(s) 381
BstBAI YACGTR 2 cut(s) 53, 550
BstC8I GCNNGC 6 cut(s) 134, 138, 142, 296, 379, 494
BstDEI CTNAG 4 cut(s) 46, 152, 354, 497
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 1 cut(s) 344
BstH2I RGCGCY 2 cut(s) 219, 301
BstHHI GCGC 3 cut(s) 218, 300, 346
BstMWI GCNNNNNNNGC 7 cut(s) 133, 146, 227, 300, 309, 431, 446
BstSCI CCNGG 2 cut(s) 463, 464
BstSFI CTRYAG 2 cut(s) 211, 256
BstUI CGCG 1 cut(s) 344
BstV1I GCAGC 7 cut(s) 225, 242, 270, 383, 412, 461, 613
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 483
BtsCI GGATG 1 cut(s) 364
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 6 cut(s) 134, 138, 142, 296, 379, 494
CaiI CAGNNNCTG 1 cut(s) 377
CfoI GCGC 3 cut(s) 218, 300, 346
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 487
Cfr9I CCCGGG 1 cut(s) 464
CseI GACGC 2 cut(s) 370, 441
Csp6I GTAC 2 cut(s) 50, 244
CviAII CATG 5 cut(s) 67, 115, 163, 289, 484
CviQI GTAC 2 cut(s) 50, 244
DdeI CTNAG 4 cut(s) 46, 152, 354, 497
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
EciI GGCGGA 4 cut(s) 217, 479, 548, 578
Eco130I CCWWGG 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 487
Eco72I CACGTG 1 cut(s) 550
Eco88I CYCGRG 2 cut(s) 237, 464
EcoT14I CCWWGG 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 5 cut(s) 70, 118, 166, 292, 487
FaiI YATR 7 cut(s) 40, 68, 116, 164, 290, 485, 575
FatI CATG 5 cut(s) 66, 114, 162, 288, 483
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 1 cut(s) 482
GlaI GCGC 3 cut(s) 217, 299, 345
GsuI CTGGAG 1 cut(s) 419
HaeII RGCGCY 2 cut(s) 219, 301
HaeIII GGCC 1 cut(s) 29
HapII CCGG 2 cut(s) 20, 465
HgaI GACGC 2 cut(s) 370, 441
HhaI GCGC 3 cut(s) 218, 300, 346
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 5 cut(s) 70, 118, 166, 292, 487
Hin6I GCGC 3 cut(s) 216, 298, 344
HinP1I GCGC 3 cut(s) 216, 298, 344
HinfI GANTC 1 cut(s) 509
HpaII CCGG 2 cut(s) 20, 465
HphI GGTGA 1 cut(s) 447
Hpy166II GTNNAC 1 cut(s) 553
Hpy188III TCNNGA 4 cut(s) 239, 356, 385, 472
Hpy8I GTNNAC 1 cut(s) 553
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 2 cut(s) 289, 382
HpyCH4IV ACGT 2 cut(s) 52, 549
HpyCH4V TGCA 3 cut(s) 213, 258, 616
HpyF10VI GCNNNNNNNGC 7 cut(s) 133, 146, 227, 300, 309, 431, 446
HpyF3I CTNAG 4 cut(s) 46, 152, 354, 497
HpySE526I ACGT 2 cut(s) 52, 549
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 5 cut(s) 70, 118, 166, 292, 487
HspAI GCGC 3 cut(s) 216, 298, 344
LguI GCTCTTC 1 cut(s) 470
LmnI GCTCC 2 cut(s) 42, 102
LpnPI CCDG 9 cut(s) 33, 154, 320, 341, 363, 383, 478, 506, 602
Lsp1109I GCAGC 7 cut(s) 225, 242, 270, 383, 412, 461, 613
MaeII ACGT 2 cut(s) 52, 549
MaeIII GTNAC 1 cut(s) 453
MboII GAAGA 2 cut(s) 55, 487
MhlI GDGCHC 2 cut(s) 340, 482
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 1 cut(s) 592
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 1 cut(s) 503
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 3 cut(s) 255, 377, 496
MspI CCGG 2 cut(s) 20, 465
MspR9I CCNGG 2 cut(s) 465, 466
Mva1269I GAATGC 1 cut(s) 618
MvnI CGCG 1 cut(s) 344
MwoI GCNNNNNNNGC 7 cut(s) 133, 146, 227, 300, 309, 431, 446
NciI CCSGG 2 cut(s) 465, 466
NcoI CCATGG 1 cut(s) 483
NlaIII CATG 5 cut(s) 70, 118, 166, 292, 487
NmuCI GTSAC 1 cut(s) 453
PciSI GCTCTTC 1 cut(s) 470
PcsI WCGNNNNNNNCGW 2 cut(s) 449, 512
PctI GAATGC 1 cut(s) 618
PflMI CCANNNNNTGG 1 cut(s) 289
PleI GAGTC 1 cut(s) 503
PmaCI CACGTG 1 cut(s) 550
PmlI CACGTG 1 cut(s) 550
PpsI GAGTC 1 cut(s) 503
Ppu21I YACGTR 2 cut(s) 53, 550
PspCI CACGTG 1 cut(s) 550
PspPI GGNCC 1 cut(s) 487
PstI CTGCAG 2 cut(s) 215, 260
PstNI CAGNNNCTG 1 cut(s) 377
PvuII CAGCTG 2 cut(s) 255, 496
RsaI GTAC 2 cut(s) 51, 245
RsaNI GTAC 2 cut(s) 50, 244
RseI CAYNNNNRTG 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 470
SaqAI TTAA 1 cut(s) 71
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 2 cut(s) 465, 466
SduI GDGCHC 2 cut(s) 340, 482
SfcI CTRYAG 2 cut(s) 211, 256
SinI GGWCC 1 cut(s) 487
SmaI CCCGGG 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 1 cut(s) 592
StyD4I CCNGG 2 cut(s) 463, 464
StyI CCWWGG 1 cut(s) 483
TaiI ACGT 2 cut(s) 55, 552
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 592
TauI GCSGC 6 cut(s) 221, 233, 303, 349, 377, 563
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 1 cut(s) 215
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 7 cut(s) 213, 255, 258, 371, 425, 449, 601
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 2 cut(s) 55, 137
TspGWI ACGGA 3 cut(s) 504, 510, 521
TspMI CCCGGG 1 cut(s) 464
TspRI CASTG 1 cut(s) 215
Van91I CCANNNNNTGG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 1 cut(s) 592
XmaI CCCGGG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.