AT1G52220

Protein CURVATURE THYLAKOID 1C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011403
Physical Location & Seq
Reverse (-)
19453435 .. 19454765
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52220.1

Sequence Viewer

Length: 471 bp
ATGGCTTCAATTTCTGCAACTTTGCCTTCGCCATTGTTACTCACACAGAGAAAATCCAATCTCACATCGATTCAAAAACTCCCATTTTCTCTAACTCGAGGTACGAATGATCTTTCTCCATTATCTCTTACTCGAAACCCTAGCAGCATCAGTCTGATGGTGAAAGCTAGTGGAGAAAGCTCAGATTCATCGACTGATCTCGACGTTGTTAGTACGATTCAGAATGTTTGGGATAAGTCTGAAGATAGGTTAGGTCTTATTGGTTTGGGTTTTGCTGGTATTGTAGCTCTTTGGGCATCATTGAATCTCATCACGGCAATCGACAAATTGCCCGTTATCTCGAGCGGATTCGAACTAGTTGGTATCTTGTTCTCCACGTGGTTCACATATCGATATCTCTTGTTCAAACCGGACAGACAGGAGCTTTCGAAAATTGTCAAGAAATCAGTAGCGGATATACTTGGCCAGTGA

Protein Analysis

156

Amino Acids

16.95

Weight (kDa)

9.0

Isoelectric Point (pI)

26.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAAD PF14159 72 - 155 1.8e-29 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52220 AT1G52220 AT1G52220 AT1G52220
fragaria_vesca FvH4_5g26750 FvH4_5g26750 FvH4_5g26750
malus_domestica MD09G1209100.v1.1
prunus_persica Prupe.3G066500_v2.0.a1 Prupe.3G066500_v2.0.a1
pyrus_communis pycom09g12530
rosa_chinensis RchiOBHm_Chr7g0217621
rosa_laevigata RLG00000002456
rosa_roxburghii Rroxscaffold_3G00241800
rosa_rugosa Rorug07G0170400
rosa_samantha Rh7AG310500 Rh7BG301800 Rh7CG329500 Rh7DG310600
rosa_wichuraiana Rw7G026360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 345
AciI CCGC 2 cut(s) 345, 452
AcoI YGGCCR 1 cut(s) 463
AcuI CTGAAG 1 cut(s) 261
AcvI CACGTG 1 cut(s) 378
AfaI GTAC 2 cut(s) 103, 214
AgsI TTSAA 4 cut(s) 9, 74, 304, 406
AhlI ACTAGT 1 cut(s) 355
AluBI AGCT 4 cut(s) 167, 180, 287, 424
AluI AGCT 4 cut(s) 167, 180, 287, 424
Ama87I CYCGRG 2 cut(s) 96, 340
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 172
AsuII TTCGAA 2 cut(s) 351, 428
AvaI CYCGRG 2 cut(s) 96, 340
BalI TGGCCA 1 cut(s) 465
BbrPI CACGTG 1 cut(s) 378
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 151
BceAI ACGGC 1 cut(s) 330
BcuI ACTAGT 1 cut(s) 355
BfaI CTAG 3 cut(s) 141, 168, 356
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
BmeT110I CYCGRG 2 cut(s) 96, 340
BmsI GCATC 2 cut(s) 156, 305
Bpu14I TTCGAA 2 cut(s) 351, 428
Bsa29I ATCGAT 2 cut(s) 68, 391
BsaAI YACGTR 1 cut(s) 378
BsaWI WCCGGW 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 466
BseCI ATCGAT 2 cut(s) 68, 391
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 466
BseXI GCAGC 1 cut(s) 156
BshFI GGCC 1 cut(s) 465
BshVI ATCGAT 2 cut(s) 68, 391
BsiHKCI CYCGRG 2 cut(s) 96, 340
BsiSI CCGG 1 cut(s) 410
BsnI GGCC 1 cut(s) 465
BsoBI CYCGRG 2 cut(s) 96, 340
Bsp119I TTCGAA 2 cut(s) 351, 428
Bsp143I GATC 2 cut(s) 109, 196
BspACI CCGC 2 cut(s) 345, 452
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 1 cut(s) 194
BspDI ATCGAT 2 cut(s) 68, 391
BspT104I TTCGAA 2 cut(s) 351, 428
BsrBI CCGCTC 1 cut(s) 345
BsrI ACTGG 1 cut(s) 466
BssMI GATC 2 cut(s) 109, 196
BstBAI YACGTR 1 cut(s) 378
BstBI TTCGAA 2 cut(s) 351, 428
BstDEI CTNAG 1 cut(s) 181
BstKTI GATC 2 cut(s) 112, 199
BstMBI GATC 2 cut(s) 109, 196
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 156
Bsu15I ATCGAT 2 cut(s) 68, 391
BsuRI GGCC 1 cut(s) 465
BsuTUI ATCGAT 2 cut(s) 68, 391
ClaI ATCGAT 2 cut(s) 68, 391
Csp6I GTAC 2 cut(s) 102, 213
CviJI RGCY 6 cut(s) 5, 167, 180, 287, 424, 465
CviKI_1 RGCY 6 cut(s) 5, 167, 180, 287, 424, 465
CviQI GTAC 2 cut(s) 102, 213
DdeI CTNAG 1 cut(s) 181
DpnI GATC 2 cut(s) 111, 198
DpnII GATC 2 cut(s) 109, 196
EaeI YGGCCR 1 cut(s) 463
Eco32I GATATC 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 261
Eco72I CACGTG 1 cut(s) 378
Eco88I CYCGRG 2 cut(s) 96, 340
EcoRV GATATC 1 cut(s) 395
FaiI YATR 2 cut(s) 388, 458
Fnu4HI GCNGC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 3 cut(s) 141, 168, 356
GluI GCNGC 1 cut(s) 145
HaeIII GGCC 1 cut(s) 465
HapII CCGG 1 cut(s) 410
HinfI GANTC 5 cut(s) 70, 185, 217, 304, 348
HpaII CCGG 1 cut(s) 410
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 4 cut(s) 156, 184, 222, 241
Hpy188III TCNNGA 3 cut(s) 200, 340, 439
Hpy8I GTNNAC 1 cut(s) 384
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 36
HpyCH4IV ACGT 2 cut(s) 204, 377
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 181
HpySE526I ACGT 2 cut(s) 204, 377
Kzo9I GATC 2 cut(s) 109, 196
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 3 cut(s) 261, 404, 423
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 2 cut(s) 156, 305
MaeI CTAG 3 cut(s) 141, 168, 356
MaeII ACGT 2 cut(s) 204, 377
MaeIII GTNAC 1 cut(s) 36
MalI GATC 2 cut(s) 111, 198
MbiI CCGCTC 1 cut(s) 345
MboI GATC 2 cut(s) 109, 196
MboII GAAGA 1 cut(s) 254
MlsI TGGCCA 1 cut(s) 465
MluCI AATT 3 cut(s) 9, 326, 432
MluNI TGGCCA 1 cut(s) 465
MnlI CCTC 1 cut(s) 92
Mox20I TGGCCA 1 cut(s) 465
MscI TGGCCA 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 465
MspI CCGG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 2 cut(s) 109, 196
NspV TTCGAA 2 cut(s) 351, 428
PaeR7I CTCGAG 2 cut(s) 96, 340
PfeI GAWTC 5 cut(s) 70, 185, 217, 304, 348
PkrI GCNGC 1 cut(s) 146
PmaCI CACGTG 1 cut(s) 378
PmlI CACGTG 1 cut(s) 378
Ppu21I YACGTR 1 cut(s) 378
PspCI CACGTG 1 cut(s) 378
PspXI VCTCGAGB 1 cut(s) 96
RsaI GTAC 2 cut(s) 103, 214
RsaNI GTAC 2 cut(s) 102, 213
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 2 cut(s) 109, 196
SetI ASST 9 cut(s) 103, 169, 182, 207, 251, 256, 289, 380, 426
SfaNI GCATC 2 cut(s) 156, 305
Sfr274I CTCGAG 2 cut(s) 96, 340
SfuI TTCGAA 2 cut(s) 351, 428
SlaI CTCGAG 2 cut(s) 96, 340
SmlI CTYRAG 2 cut(s) 96, 340
SmoI CTYRAG 2 cut(s) 96, 340
SpeI ACTAGT 1 cut(s) 355
Sse9I AATT 3 cut(s) 9, 326, 432
SsiI CCGC 2 cut(s) 345, 452
SspMI CTAG 3 cut(s) 141, 168, 356
TaiI ACGT 2 cut(s) 207, 380
TasI AATT 3 cut(s) 9, 326, 432
TfiI GAWTC 5 cut(s) 70, 185, 217, 304, 348
TseI GCWGC 1 cut(s) 144
TspDTI ATGAA 1 cut(s) 177
XhoI CTCGAG 2 cut(s) 96, 340
XspI CTAG 3 cut(s) 141, 168, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.