Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011403

Physical Location & Seq

Genomic Coordinates Reverse (-)

20152304 .. 20156905

Gene Structure 4602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1209100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCTTCCATCATTGCAAGCTTGCCTCCACCACTGTTGGTCCATGGCAGAAATACAAACACGACCCTTTTCAGAGCTCTTCCAAAACTCCCCGTTTCTTCCGTTTCAGAGAGACAGAATCGTGTTGCTGTTGTGGTGAAGGCTACTGGGGAAAGCTCCGAGTCTTCAACATCTATTGTGAAATCTGTTCAGAATGTGTGGGATAATTCTGAAGATCGGCCAGCTCTTGTTGCTTTGGGGTTTGCAGCTGTAGTAGGTTTATGGACATCAACGAATTTGATTACAGCCATTGACAAGTTGCCGCTTATCCCAAGTGTGCTGGAATTTGTCGGAATACTTTTCTCTTCGTGGTTTATATATCGATATCTCCTATTCAAGCCTGACCGGGAAGAGTTTTTCCAAATCGTGAACAAATCAATATCCAATATCTTGGGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

147

Amino Acids

16.06

Weight (kDa)

9.15

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	61 - 145	2e-29	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52220 AT1G52220 AT1G52220 AT1G52220
fragaria_vesca	FvH4_5g26750 FvH4_5g26750 FvH4_5g26750
malus_domestica	MD09G1209100.v1.1
prunus_persica	Prupe.3G066500_v2.0.a1 Prupe.3G066500_v2.0.a1
pyrus_communis	pycom09g12530
rosa_chinensis	RchiOBHm_Chr7g0217621
rosa_laevigata	RLG00000002456
rosa_roxburghii	Rroxscaffold_3G00241800
rosa_rugosa	Rorug07G0170400
rosa_samantha	Rh7AG310500 Rh7BG301800 Rh7CG329500 Rh7DG310600
rosa_wichuraiana	Rw7G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	2 cut(s)	274, 323
AcuI	CTGAAG	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	168, 376
AluBI	AGCT	5 cut(s)	21, 77, 156, 224, 248
AluI	AGCT	5 cut(s)	21, 77, 156, 224, 248
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	106
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	2 cut(s)	274, 323
AspS9I	GGNCC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	106
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	2 cut(s)	246, 302
BlsI	GCNGC	2 cut(s)	247, 303
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	12
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	257
BshFI	GGCC	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	361
BspQI	GCTCTTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	3 cut(s)	84, 349, 384
BstC8I	GCNNGC	3 cut(s)	19, 23, 222
BstDSI	CCRYGG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	430
Bsu15I	ATCGAT	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	220
BsuTUI	ATCGAT	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	3 cut(s)	19, 23, 222
Cfr13I	GGNCC	1 cut(s)	40
ClaI	ATCGAT	1 cut(s)	361
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	1 cut(s)	44
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	3 cut(s)	84, 349, 384
EarI	CTCTTC	3 cut(s)	84, 349, 384
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	1 cut(s)	47
FaiI	YATR	4 cut(s)	45, 262, 356, 358
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	246, 302
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	246, 302
GluI	GCNGC	2 cut(s)	246, 302
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	385
Hin1II	CATG	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	2 cut(s)	118, 161
HpaII	CCGG	1 cut(s)	385
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	6 cut(s)	74, 109, 160, 192, 211, 332
Hpy188III	TCNNGA	1 cut(s)	406
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	17, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	214
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	5 cut(s)	132, 234, 305, 393, 398
Lsp1109I	GCAGC	1 cut(s)	257
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	6 cut(s)	71, 90, 156, 224, 336, 401
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	3 cut(s)	205, 274, 323
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	386
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	247, 303
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	84
SatI	GCNGC	2 cut(s)	246, 302
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	23, 79, 158, 226, 250, 259
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	3 cut(s)	205, 274, 323
SsiI	CCGC	1 cut(s)	302
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	361
TasI	AATT	3 cut(s)	205, 274, 323
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	118
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	1 cut(s)	245
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	274, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.