FvH4_5g26750

Protein CURVATURE THYLAKOID 1C, chloroplastic

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
18159951 .. 18162608
2658 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26750.t3

Sequence Viewer

Length: 387 bp
ATGGCTTCTATTATTGCAAGCTTGCCTCCTCCATTGCTGACCCATGCTAGAACTAATACCTCACTGACTGCTCTACCAAAGTTACCACTGTGTTCCTTTAGAGAGCGACATAATTGTGTTGCTGTTGTGGTGAGGGCTACTGGGGATAGCTCCGAGTCCTCTACTTCACTCAGTATAGTTGACTCTGTTAAGAATGCTTGGGATAATTCTGAAGATCGAATAGCTCTTGTCGGTTTGGGATTTGCAGCTGTTGTAGGTCTTTGGGCATCAGCGAATCTGATTACGGCAATTGACAGGTTGCCGCTTCTCCCAACTGTGCTAGAAGTTGTTGGAATACTCTACTCTTCAGTAATGGTTCATATATCGTTATCTCTTATTCAAACCTGA

Protein Analysis

129

Amino Acids

13.55

Weight (kDa)

6.24

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011403)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 302
AcuI CTGAAG 2 cut(s) 231, 330
AgsI TTSAA 1 cut(s) 380
AluBI AGCT 4 cut(s) 21, 150, 224, 248
AluI AGCT 4 cut(s) 21, 150, 224, 248
ApeKI GCWGC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 142
BbvI GCAGC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 300
BfaI CTAG 2 cut(s) 48, 320
BisI GCNGC 2 cut(s) 246, 302
BlsI GCNGC 2 cut(s) 247, 303
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 32
BsrI ACTGG 1 cut(s) 145
BssMI GATC 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 90, 316
Bst6I CTCTTC 1 cut(s) 349
BstC8I GCNNGC 2 cut(s) 19, 23
BstDEI CTNAG 1 cut(s) 170
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 62, 86
Cac8I GCNNGC 2 cut(s) 19, 23
CviAII CATG 1 cut(s) 44
CviJI RGCY 6 cut(s) 5, 21, 137, 150, 224, 248
CviKI_1 RGCY 6 cut(s) 5, 21, 137, 150, 224, 248
DdeI CTNAG 1 cut(s) 170
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
Eco57I CTGAAG 2 cut(s) 231, 330
FaeI CATG 1 cut(s) 47
FaiI YATR 5 cut(s) 45, 111, 176, 360, 362
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 246, 302
Fsp4HI GCNGC 2 cut(s) 246, 302
FspBI CTAG 2 cut(s) 48, 320
GluI GCNGC 2 cut(s) 246, 302
Hin1II CATG 1 cut(s) 47
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 3 cut(s) 155, 182, 274
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 154, 211, 279
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 90, 316
HpyCH4V TGCA 2 cut(s) 17, 245
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 2 cut(s) 126, 280
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 1 cut(s) 275
MaeI CTAG 2 cut(s) 48, 320
MaeIII GTNAC 1 cut(s) 81
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 2 cut(s) 224, 336
MfeI CAATTG 1 cut(s) 288
MluCI AATT 3 cut(s) 112, 205, 288
MlyI GAGTC 2 cut(s) 164, 176
MmeI TCCRAC 1 cut(s) 310
MnlI CCTC 5 cut(s) 36, 39, 70, 126, 169
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 248
MunI CAATTG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 199
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 47
PctI GAATGC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 274
PkrI GCNGC 2 cut(s) 247, 303
PleI GAGTC 2 cut(s) 163, 176
PpsI GAGTC 2 cut(s) 163, 176
PvuII CAGCTG 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 2 cut(s) 246, 302
Sau3AI GATC 1 cut(s) 214
SchI GAGTC 2 cut(s) 164, 176
SetI ASST 8 cut(s) 23, 62, 152, 226, 250, 259, 299, 386
SfaNI GCATC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 114
Sse9I AATT 3 cut(s) 112, 205, 288
SsiI CCGC 1 cut(s) 302
SspMI CTAG 2 cut(s) 48, 320
TaaI ACNGT 2 cut(s) 90, 316
TaqI TCGA 1 cut(s) 217
TasI AATT 3 cut(s) 112, 205, 288
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 2 cut(s) 69, 93
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 2 cut(s) 69, 93
XspI CTAG 2 cut(s) 48, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.