Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011403

Physical Location & Seq

Genomic Coordinates Reverse (-)

4792344 .. 4795132

Gene Structure 2789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G066500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGTCCATTATTGCAAGCTTGCCTCCACCACTGGCCGCCCATGGTAGAAATAATACCTTCTTCAGCGCTCTTCCAAAACTCCCTTTTTCTTCCATTAGAGAGAGACAGAATTGTGCCTCTGTCGTGGTGAAGGCTACTGGGGAGAGCTCGGAGTCTTCGAACTCCCTTAGTATTGTAAAATCTGTTCAGAATGTCTGGGATAACTCGGAAGATCGGCCAGGTCTTGTTGGTTTGGGGTTTGCAGCTATAGTTGCATTTTGGGCAGCATCAAATCTGATTACAGCCATCGACAAGTTGCCGCTTATCCCAAGTGTACTAGAATTTGTTGGCATACTTTATTCTTCGTGGTTTATATATCGATACCTCTTATTCAAGCCTGATCGGGAAGAGCTTTTCCAAATCGTCAACAAATCCATATCAGATATCTTGGGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

147

Amino Acids

15.99

Weight (kDa)

6.57

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52220 AT1G52220 AT1G52220 AT1G52220
fragaria_vesca	FvH4_5g26750 FvH4_5g26750 FvH4_5g26750
malus_domestica	MD09G1209100.v1.1
prunus_persica	Prupe.3G066500_v2.0.a1 Prupe.3G066500_v2.0.a1
pyrus_communis	pycom09g12530
rosa_chinensis	RchiOBHm_Chr7g0217621
rosa_laevigata	RLG00000002456
rosa_roxburghii	Rroxscaffold_3G00241800
rosa_rugosa	Rorug07G0170400
rosa_samantha	Rh7AG310500 Rh7BG301800 Rh7CG329500 Rh7DG310600
rosa_wichuraiana	Rw7G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	39, 302
AcoI	YGGCCR	2 cut(s)	36, 218
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	318
AfeI	AGCGCT	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	4 cut(s)	21, 150, 248, 394
AluI	AGCT	4 cut(s)	21, 150, 248, 394
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	1 cut(s)	100
Aor51HI	AGCGCT	1 cut(s)	70
AoxI	GGCC	3 cut(s)	36, 218, 433
ApeKI	GCWGC	2 cut(s)	245, 266
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	142
AsuII	TTCGAA	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	257, 278
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	4 cut(s)	39, 246, 267, 302
BlsI	GCNGC	4 cut(s)	40, 247, 268, 303
Bme1390I	CCNGG	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	433
BmrFI	CCNGG	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	278
BmuI	ACTGGG	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	43
Bse1I	ACTGG	3 cut(s)	39, 145, 436
BseBI	CCWGG	1 cut(s)	222
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	43
BseNI	ACTGG	3 cut(s)	39, 145, 436
BseXI	GCAGC	2 cut(s)	257, 278
BshFI	GGCC	3 cut(s)	38, 220, 435
BshVI	ATCGAT	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	38, 220, 435
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	214, 382
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	2 cut(s)	39, 302
BspANI	GGCC	3 cut(s)	38, 220, 435
BspDI	ATCGAT	1 cut(s)	361
BspQI	GCTCTTC	2 cut(s)	78, 384
BspT104I	TTCGAA	1 cut(s)	161
BsrI	ACTGG	3 cut(s)	39, 145, 436
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	214, 382
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	2 cut(s)	78, 384
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	19, 23
BstDEI	CTNAG	1 cut(s)	170
BstDSI	CCRYGG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	217, 385
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	2 cut(s)	214, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 263
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	257, 278
BstV2I	GAAGAC	1 cut(s)	150
Bsu15I	ATCGAT	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	38, 220, 435
BsuTUI	ATCGAT	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	2 cut(s)	19, 23
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	433
ClaI	ATCGAT	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	1 cut(s)	44
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	2 cut(s)	216, 384
DpnII	GATC	2 cut(s)	214, 382
EaeI	YGGCCR	2 cut(s)	36, 218
Eam1104I	CTCTTC	2 cut(s)	78, 384
EarI	CTCTTC	2 cut(s)	78, 384
Ecl136II	GAGCTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	427
Eco47III	AGCGCT	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	1 cut(s)	47
FaiI	YATR	6 cut(s)	45, 251, 335, 356, 358, 419
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	4 cut(s)	39, 246, 267, 302
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	4 cut(s)	39, 246, 267, 302
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	4 cut(s)	39, 246, 267, 302
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	38, 220, 435
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	317, 409
Hpy188I	TCNGA	5 cut(s)	154, 192, 211, 279, 424
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	2 cut(s)	317, 409
HpyAV	CCTTC	2 cut(s)	70, 127
HpyCH4V	TGCA	3 cut(s)	17, 245, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 263
HpyF3I	CTNAG	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	47
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	214, 382
LguI	GCTCTTC	2 cut(s)	78, 384
LpnPI	CCDG	6 cut(s)	20, 126, 184, 207, 234, 393
Lsp1109I	GCAGC	2 cut(s)	257, 278
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	1 cut(s)	320
MalI	GATC	2 cut(s)	216, 384
MboI	GATC	2 cut(s)	214, 382
MboII	GAAGA	7 cut(s)	55, 65, 84, 150, 224, 336, 401
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	2 cut(s)	112, 323
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	3 cut(s)	36, 130, 377
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	254, 263
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	2 cut(s)	214, 382
NlaIII	CATG	1 cut(s)	47
NspV	TTCGAA	1 cut(s)	161
PciSI	GCTCTTC	2 cut(s)	78, 384
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	40, 247, 268, 303
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp124BI	GAGCTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	433
PsrI	GAACNNNNNNTAC	2 cut(s)	171, 203
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SacI	GAGCTC	1 cut(s)	152
SapI	GCTCTTC	2 cut(s)	78, 384
SatI	GCNGC	4 cut(s)	39, 246, 267, 302
Sau3AI	GATC	2 cut(s)	214, 382
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	7 cut(s)	23, 62, 152, 226, 250, 369, 396
SfaNI	GCATC	1 cut(s)	278
SfcI	CTRYAG	1 cut(s)	249
SfuI	TTCGAA	1 cut(s)	161
Sse9I	AATT	2 cut(s)	112, 323
SsiI	CCGC	2 cut(s)	39, 302
SspMI	CTAG	1 cut(s)	320
SstI	GAGCTC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	43
TaqI	TCGA	3 cut(s)	161, 291, 361
TasI	AATT	2 cut(s)	112, 323
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	2 cut(s)	41, 304
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	2 cut(s)	245, 266
TspRI	CASTG	1 cut(s)	39
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.