Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011403

Physical Location & Seq

Genomic Coordinates Reverse (-)

11124331 .. 11126332

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12530.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGACTTCCATCATTGCAAGCTTGCCTCCACCACTGTTGGCCCATAGCAGAAATACAAATACCACCCTTTTCAGAGCTCTTCCAAAACTCCCCGTTTCTTCCGTTTCAGTTTCTGACTTTTCAGAGAGACAGAATCGTGTTGCTGTTGTGGTGAAGGCTACTGGGGAAAGCTCCGAGTCTTCAACATCTATTGTGAAATCTGTTCAGAATGTGTGGGATAATTCTGAAGATCGGCCTGCTCTTGTTGCTTTGGGGTTTGCAGCTGTAGTTGGTTTATGGACATCAACGAATTTGATTACAGTAATTTTCTTATCTCTCTGTTCTTTTCAGTTCTTGAAAGGAATGAAAAGTGTTGTTGCAATAGTTGATACGAGCTTGTATGTACTAATACCAACTATCAACATCTGGCACTTTCTGTGGCATTCATATGTAGGGACCAAGTTACACTGTCAAAGCTTAAAACTTCTTAAATTTTTTTATTTCCAGAGTAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

166

Amino Acids

18.31

Weight (kDa)

9.74

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52220 AT1G52220 AT1G52220 AT1G52220
fragaria_vesca	FvH4_5g26750 FvH4_5g26750 FvH4_5g26750
malus_domestica	MD09G1209100.v1.1
prunus_persica	Prupe.3G066500_v2.0.a1 Prupe.3G066500_v2.0.a1
pyrus_communis	pycom09g12530
rosa_chinensis	RchiOBHm_Chr7g0217621
rosa_laevigata	RLG00000002456
rosa_roxburghii	Rroxscaffold_3G00241800
rosa_rugosa	Rorug07G0170400
rosa_samantha	Rh7AG310500 Rh7BG301800 Rh7CG329500 Rh7DG310600
rosa_wichuraiana	Rw7G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	289, 470
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	183, 337
AluBI	AGCT	6 cut(s)	21, 77, 171, 263, 375, 456
AluI	AGCT	6 cut(s)	21, 77, 171, 263, 375, 456
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	121
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	39, 233
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	2 cut(s)	289, 470
AspS9I	GGNCC	2 cut(s)	40, 435
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	121
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	2 cut(s)	40, 435
BmiI	GGNNCC	1 cut(s)	436
BmrI	ACTGGG	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	272
BshFI	GGCC	2 cut(s)	41, 235
BsiHKAI	GWGCWC	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	448
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	41, 235
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	229
BspANI	GGCC	2 cut(s)	41, 235
BspLI	GGNNCC	1 cut(s)	436
BspQI	GCTCTTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	229
Bst4CI	ACNGT	3 cut(s)	36, 301, 449
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	19, 23, 237
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	41, 235
BtsIMutI	CAGTG	2 cut(s)	32, 445
Cac8I	GCNNGC	3 cut(s)	19, 23, 237
CaiI	CAGNNNCTG	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	40, 435
Csp6I	GTAC	1 cut(s)	383
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviJI	RGCY	9 cut(s)	21, 41, 77, 158, 171, 235, 263, 375, 456
CviKI_1	RGCY	9 cut(s)	21, 41, 77, 158, 171, 235, 263, 375, 456
CviQI	GTAC	1 cut(s)	383
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	79
FaiI	YATR	5 cut(s)	45, 277, 381, 427, 429
FaqI	GGGAC	1 cut(s)	448
FauNDI	CATATG	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	41, 235
HindIII	AAGCTT	2 cut(s)	19, 454
HinfI	GANTC	2 cut(s)	133, 176
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	6 cut(s)	74, 115, 124, 175, 207, 226
Hpy188III	TCNNGA	2 cut(s)	334, 484
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	3 cut(s)	36, 301, 449
HpyCH4V	TGCA	3 cut(s)	17, 260, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	229
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	3 cut(s)	147, 249, 391
Lsp1109I	GCAGC	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	4 cut(s)	71, 90, 171, 239
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	4 cut(s)	220, 289, 303, 470
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	1 cut(s)	36
MseI	TTAA	2 cut(s)	458, 468
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	1 cut(s)	229
NlaIV	GGNNCC	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	84
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	2 cut(s)	40, 435
PstNI	CAGNNNCTG	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	458, 468
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	2 cut(s)	40, 435
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	6 cut(s)	23, 79, 173, 265, 377, 458
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	4 cut(s)	220, 289, 303, 470
SstI	GAGCTC	1 cut(s)	79
TaaI	ACNGT	3 cut(s)	36, 301, 449
TasI	AATT	4 cut(s)	220, 289, 303, 470
TatI	WGTACW	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	458, 468
Tru9I	TTAA	2 cut(s)	458, 468
TscAI	CASTG	2 cut(s)	39, 452
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	359, 414
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	2 cut(s)	39, 452
VpaK11BI	GGWCC	1 cut(s)	435
XapI	RAATTY	2 cut(s)	289, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.