Rh7DG310600

Protein CURVATURE THYLAKOID 1C, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011403
Physical Location & Seq
Reverse (-)
36329369 .. 36332030
2662 bp
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UTR
Exon/CDS
Intron
Rh7DG310600.1

Sequence Viewer

Length: 441 bp
ATGGCTTCTATTATTGCAAGCTTGCCTCCCCCATTGTTGGCCCAAAGTAGGAGAAACACCTTACTGACAGCTCTCCCAAAACTACCAGTGTGTTCCTTTAAAGAGCGACAGAACCGTGTTGCTGTTGTGGTGAGGGCTACTAGTAAAAGCTCCGAGTCCTCTACCTCACTCAGTATAGTTAAGTCTGTTCAGAATGCTTGGGATAATTCTGAGGATCGAATAGCTCTTGTTGGTTTGGGATTTGCAGCTGTTGTGGCTTTTTGGGCATCAGCAAATCTGATTACGGCAATTGACAAGTTGCCGCTTCTCCCAAGTGTGCTAGAATTTGTTGGAATACTCTACTCTTCGTGGTTCATATATCGTTATCTCTTATTCAAACCTGATCGGGAAGAGCTTTTTAAAATCGCCAACAAATCAATATCAAATATCTTTGGCCAGTGA

Protein Analysis

146

Amino Acids

16.11

Weight (kDa)

9.77

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAAD PF14159 61 - 145 1.4e-30 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52220 AT1G52220 AT1G52220 AT1G52220
fragaria_vesca FvH4_5g26750 FvH4_5g26750 FvH4_5g26750
malus_domestica MD09G1209100.v1.1
prunus_persica Prupe.3G066500_v2.0.a1 Prupe.3G066500_v2.0.a1
pyrus_communis pycom09g12530
rosa_chinensis RchiOBHm_Chr7g0217621
rosa_laevigata RLG00000002456
rosa_roxburghii Rroxscaffold_3G00241800
rosa_rugosa Rorug07G0170400
rosa_samantha Rh7AG310500 Rh7BG301800 Rh7CG329500 Rh7DG310600
rosa_wichuraiana Rw7G026360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 302
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 37, 48
AgsI TTSAA 1 cut(s) 376
AhlI ACTAGT 1 cut(s) 140
AluBI AGCT 6 cut(s) 21, 71, 150, 224, 248, 394
AluI AGCT 6 cut(s) 21, 71, 150, 224, 248, 394
AlwI GGATC 1 cut(s) 222
AoxI GGCC 2 cut(s) 39, 433
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 142
BalI TGGCCA 1 cut(s) 435
BbvI GCAGC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 300
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 2 cut(s) 141, 320
BisI GCNGC 2 cut(s) 246, 302
BlsI GCNGC 2 cut(s) 247, 303
BmgT120I GGNCC 1 cut(s) 40
BmsI GCATC 1 cut(s) 275
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 48
Bse1I ACTGG 2 cut(s) 86, 436
BseLI CCNNNNNNNGG 2 cut(s) 37, 48
BseMII CTCAG 2 cut(s) 184, 201
BseNI ACTGG 2 cut(s) 86, 436
BseXI GCAGC 1 cut(s) 257
BshFI GGCC 2 cut(s) 41, 435
BslI CCNNNNNNNGG 2 cut(s) 37, 48
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 2 cut(s) 41, 435
Bsp143I GATC 2 cut(s) 214, 382
BspACI CCGC 1 cut(s) 302
BspANI GGCC 2 cut(s) 41, 435
BspCNI CTCAG 2 cut(s) 183, 202
BspPI GGATC 1 cut(s) 222
BspQI GCTCTTC 1 cut(s) 384
BsrI ACTGG 2 cut(s) 86, 436
BssMI GATC 2 cut(s) 214, 382
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 349, 384
BstC8I GCNNGC 2 cut(s) 19, 23
BstDEI CTNAG 2 cut(s) 170, 210
BstKTI GATC 2 cut(s) 217, 385
BstMBI GATC 2 cut(s) 214, 382
BstMWI GCNNNNNNNGC 2 cut(s) 254, 263
BstV1I GCAGC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 41, 435
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 19, 23
Cfr13I GGNCC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 170, 210
DpnI GATC 2 cut(s) 216, 384
DpnII GATC 2 cut(s) 214, 382
DraI TTTAAA 2 cut(s) 100, 400
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 2 cut(s) 349, 384
EarI CTCTTC 2 cut(s) 349, 384
FaiI YATR 3 cut(s) 176, 356, 358
Fnu4HI GCNGC 2 cut(s) 246, 302
Fsp4HI GCNGC 2 cut(s) 246, 302
FspBI CTAG 2 cut(s) 141, 320
GluI GCNGC 2 cut(s) 246, 302
HaeIII GGCC 2 cut(s) 41, 435
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 1 cut(s) 155
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 4 cut(s) 154, 192, 211, 279
Hpy188III TCNNGA 1 cut(s) 386
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 17, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 263
HpyF3I CTNAG 2 cut(s) 170, 210
Kzo9I GATC 2 cut(s) 214, 382
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 2 cut(s) 99, 393
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 1 cut(s) 275
MaeI CTAG 2 cut(s) 141, 320
MalI GATC 2 cut(s) 216, 384
MboI GATC 2 cut(s) 214, 382
MboII GAAGA 2 cut(s) 336, 401
MfeI CAATTG 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 3 cut(s) 205, 288, 323
MluNI TGGCCA 1 cut(s) 435
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 310
MnlI CCTC 5 cut(s) 36, 126, 169, 175, 205
Mox20I TGGCCA 1 cut(s) 435
MscI TGGCCA 1 cut(s) 435
MseI TTAA 3 cut(s) 99, 180, 399
Msp20I TGGCCA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 248
MunI CAATTG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 254, 263
NdeII GATC 2 cut(s) 214, 382
PciSI GCTCTTC 1 cut(s) 384
PctI GAATGC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 247, 303
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 248
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 3 cut(s) 99, 180, 399
SatI GCNGC 2 cut(s) 246, 302
Sau3AI GATC 2 cut(s) 214, 382
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 1 cut(s) 164
SetI ASST 9 cut(s) 23, 62, 73, 152, 167, 226, 250, 382, 396
SfaNI GCATC 1 cut(s) 275
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 3 cut(s) 205, 288, 323
SsiI CCGC 1 cut(s) 302
SspMI CTAG 2 cut(s) 141, 320
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 217
TasI AATT 3 cut(s) 205, 288, 323
TauI GCSGC 1 cut(s) 304
Tru1I TTAA 3 cut(s) 99, 180, 399
Tru9I TTAA 3 cut(s) 99, 180, 399
TscAI CASTG 1 cut(s) 93
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 343
TspRI CASTG 1 cut(s) 93
XapI RAATTY 1 cut(s) 323
XspI CTAG 2 cut(s) 141, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.