Rroxscaffold_3G00241800

Protein CURVATURE THYLAKOID 1C, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
34035415 .. 34037633
2219 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00241800.1

Sequence Viewer

Length: 285 bp
ATGGCTTCTATTATTGCAAGCTTGCCTCCCCCATTGTTGGCCCAAAGTAGAAGAAACACCTTACTCACAGCTCTCCCAAAACTACCAGTGTGTCTCTTTAAAGGGGCTACAAGTGAAAGCTCCGAGTCCTCTACATCACTCAGTATAGTTAAGTCTGTTCAGAATGCTTGGGATAATTCTGAGGATCGAATAGCTCTTGTTGGTTTGGGATTTGCAGCTGTTGTGGCTCTTTGGGCATCAGCAAATCTGATTACGAATTTGTTGGAATACTCTACTCTTCGGTAA

Protein Analysis

94

Amino Acids

9.97

Weight (kDa)

7.92

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011403)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 37
AluBI AGCT 5 cut(s) 21, 71, 120, 194, 218
AluI AGCT 5 cut(s) 21, 71, 120, 194, 218
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 192
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 98
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 40
BmsI GCATC 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 154, 171
BseNI ACTGG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 227
BshFI GGCC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 184
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 2 cut(s) 153, 172
BspPI GGATC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 86
BssMI GATC 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 19, 23
BstDEI CTNAG 2 cut(s) 140, 180
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 224, 233
BstV1I GCAGC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 19, 23
Cfr13I GGNCC 1 cut(s) 40
CviJI RGCY 9 cut(s) 5, 21, 41, 71, 107, 120, 194, 218, 227
CviKI_1 RGCY 9 cut(s) 5, 21, 41, 71, 107, 120, 194, 218, 227
DdeI CTNAG 2 cut(s) 140, 180
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
DraI TTTAAA 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
FaiI YATR 1 cut(s) 146
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 1 cut(s) 125
Hpy188I TCNGA 4 cut(s) 124, 162, 181, 249
HpyCH4V TGCA 2 cut(s) 17, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 233
HpyF3I CTNAG 2 cut(s) 140, 180
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 1 cut(s) 99
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 1 cut(s) 245
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 2 cut(s) 63, 269
MluCI AATT 2 cut(s) 175, 256
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 3 cut(s) 36, 139, 175
MseI TTAA 2 cut(s) 99, 150
MspA1I CMGCKG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 169
MwoI GCNNNNNNNGC 2 cut(s) 224, 233
NdeII GATC 1 cut(s) 184
PctI GAATGC 1 cut(s) 169
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 218
SaqAI TTAA 2 cut(s) 99, 150
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 1 cut(s) 134
SetI ASST 6 cut(s) 23, 62, 73, 122, 196, 220
SfaNI GCATC 1 cut(s) 245
SgeI CNNG 7 cut(s) 30, 34, 98, 123, 136, 180, 209
Sse9I AATT 2 cut(s) 175, 256
TaqI TCGA 1 cut(s) 187
TasI AATT 2 cut(s) 175, 256
Tru1I TTAA 2 cut(s) 99, 150
Tru9I TTAA 2 cut(s) 99, 150
TscAI CASTG 1 cut(s) 93
TseI GCWGC 1 cut(s) 215
TspRI CASTG 1 cut(s) 93
XapI RAATTY 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.