Rh7AG310500

Protein CURVATURE THYLAKOID 1C, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011403
Physical Location & Seq
Reverse (-)
34891928 .. 34895479
3552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG310500.1

Sequence Viewer

Length: 387 bp
ATGCATTCCTCTCTCAATCTCATATTTGTGCATAACTTCTACATTACAGAGCGGCAGAACCGTGTTGCTGTTGTGGTGAGGGCTACTAGTAAAAGCTCCGAGTCCTCTACCTCACTCAGTATAGTTAAGTCTGTTCAGAATGCTTGGGATAATTCTGAGGATCGAATAGCTCTTGTTGGTTTGGGATTTGCAGCTGTTGTGGCTTTTTGGGCATCAGCAAATCTGATTACGGCAATTGACAAGTTGCCGCTTCTCCCAAGTGTGCTAGAATTTGTTGGAATACTCTACTCTTCGTGGTTCATATATCGTTATCTCTTATTCAAACCTGATCGGGAAGAGCTTTTTAAAATCGCCAACAAATCAATATCAAATATCTTGGGCCAGTGA

Protein Analysis

128

Amino Acids

14.37

Weight (kDa)

9.05

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAAD PF14159 43 - 127 1.1e-30 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52220 AT1G52220 AT1G52220 AT1G52220
fragaria_vesca FvH4_5g26750 FvH4_5g26750 FvH4_5g26750
malus_domestica MD09G1209100.v1.1
prunus_persica Prupe.3G066500_v2.0.a1 Prupe.3G066500_v2.0.a1
pyrus_communis pycom09g12530
rosa_chinensis RchiOBHm_Chr7g0217621
rosa_laevigata RLG00000002456
rosa_roxburghii Rroxscaffold_3G00241800
rosa_rugosa Rorug07G0170400
rosa_samantha Rh7AG310500 Rh7BG301800 Rh7CG329500 Rh7DG310600
rosa_wichuraiana Rw7G026360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 52
AciI CCGC 2 cut(s) 52, 248
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 269
AgsI TTSAA 1 cut(s) 322
AhlI ACTAGT 1 cut(s) 86
AluBI AGCT 4 cut(s) 96, 170, 194, 340
AluI AGCT 4 cut(s) 96, 170, 194, 340
AlwI GGATC 1 cut(s) 168
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 379
AsuHPI GGTGA 1 cut(s) 88
BbvI GCAGC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 246
BcuI ACTAGT 1 cut(s) 86
BfaI CTAG 2 cut(s) 87, 266
BisI GCNGC 3 cut(s) 53, 192, 248
BlsI GCNGC 3 cut(s) 54, 193, 249
BmgT120I GGNCC 1 cut(s) 379
BmsI GCATC 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 382
BseMII CTCAG 2 cut(s) 130, 147
BseNI ACTGG 1 cut(s) 382
BseXI GCAGC 1 cut(s) 203
BshFI GGCC 1 cut(s) 381
BsmI GAATGC 2 cut(s) 4, 145
BsnI GGCC 1 cut(s) 381
Bsp143I GATC 2 cut(s) 160, 328
BspACI CCGC 2 cut(s) 52, 248
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 2 cut(s) 129, 148
BspPI GGATC 1 cut(s) 168
BspQI GCTCTTC 1 cut(s) 330
BsrBI CCGCTC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 382
BssMI GATC 2 cut(s) 160, 328
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 2 cut(s) 295, 330
BstDEI CTNAG 2 cut(s) 116, 156
BstKTI GATC 2 cut(s) 163, 331
BstMBI GATC 2 cut(s) 160, 328
BstMWI GCNNNNNNNGC 2 cut(s) 200, 209
BstV1I GCAGC 1 cut(s) 203
BsuRI GGCC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 379
CviJI RGCY 7 cut(s) 83, 96, 170, 194, 203, 340, 381
CviKI_1 RGCY 7 cut(s) 83, 96, 170, 194, 203, 340, 381
DdeI CTNAG 2 cut(s) 116, 156
DpnI GATC 2 cut(s) 162, 330
DpnII GATC 2 cut(s) 160, 328
DraI TTTAAA 1 cut(s) 346
Eam1104I CTCTTC 2 cut(s) 295, 330
EarI CTCTTC 2 cut(s) 295, 330
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 5 cut(s) 23, 33, 122, 302, 304
Fnu4HI GCNGC 3 cut(s) 53, 192, 248
Fsp4HI GCNGC 3 cut(s) 53, 192, 248
FspBI CTAG 2 cut(s) 87, 266
GluI GCNGC 3 cut(s) 53, 192, 248
HaeIII GGCC 1 cut(s) 381
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 4 cut(s) 100, 138, 157, 225
Hpy188III TCNNGA 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 3 cut(s) 4, 31, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 209
HpyF3I CTNAG 2 cut(s) 116, 156
Kzo9I GATC 2 cut(s) 160, 328
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 1 cut(s) 339
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 1 cut(s) 221
MaeI CTAG 2 cut(s) 87, 266
MalI GATC 2 cut(s) 162, 330
MbiI CCGCTC 1 cut(s) 52
MboI GATC 2 cut(s) 160, 328
MboII GAAGA 2 cut(s) 282, 347
MfeI CAATTG 1 cut(s) 234
MluCI AATT 3 cut(s) 151, 234, 269
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 5 cut(s) 19, 72, 115, 121, 151
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 126, 345
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 194
MunI CAATTG 1 cut(s) 234
Mva1269I GAATGC 2 cut(s) 4, 145
MwoI GCNNNNNNNGC 2 cut(s) 200, 209
NdeII GATC 2 cut(s) 160, 328
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 330
PctI GAATGC 2 cut(s) 4, 145
PkrI GCNGC 3 cut(s) 54, 193, 249
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 2 cut(s) 126, 345
SatI GCNGC 3 cut(s) 53, 192, 248
Sau3AI GATC 2 cut(s) 160, 328
Sau96I GGNCC 1 cut(s) 379
SchI GAGTC 1 cut(s) 110
SetI ASST 6 cut(s) 98, 113, 172, 196, 328, 342
SfaNI GCATC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 26
SpeI ACTAGT 1 cut(s) 86
Sse9I AATT 3 cut(s) 151, 234, 269
SsiI CCGC 2 cut(s) 52, 248
SspMI CTAG 2 cut(s) 87, 266
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 163
TasI AATT 3 cut(s) 151, 234, 269
TauI GCSGC 2 cut(s) 55, 250
Tru1I TTAA 2 cut(s) 126, 345
Tru9I TTAA 2 cut(s) 126, 345
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 289
XapI RAATTY 1 cut(s) 269
XspI CTAG 2 cut(s) 87, 266
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.