Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011403

Physical Location & Seq

Genomic Coordinates Reverse (-)

28655269 .. 28657941

Gene Structure 2673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG301800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCTTCTATTATTGCAAGCTTACCTCCCCCATTGTTGGCCCAAAGTAGAAGAAACACCTTACTCACAGCTCTCCCAAAGCTACCAGTGTGTTCCTTTAAAGAGCGACAGAACCGTGTTGCTGTTGTGGTGAGGGCTGCTAGTGAAAGCTCCGAGTCCTCTACCTCACTCAGTATAGTTAAGTCTGTTCTGAATGCTTGGGATAATTCTGAGGATCGAATAGCTCTTGTTGGTTTGGGATTTGCAGCTGTTGTGGCTATTTGGGCATCAGCAAATCTGATTACGGCAATTGACAAGTTGCCGCTTCTCCCAAGTGTGCTAGAATTTGTTGGAATACTCTACTCTTCGGTAAGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

119

Amino Acids

12.63

Weight (kDa)

9.03

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	62 - 116	9.1e-16	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52220 AT1G52220 AT1G52220 AT1G52220
fragaria_vesca	FvH4_5g26750 FvH4_5g26750 FvH4_5g26750
malus_domestica	MD09G1209100.v1.1
prunus_persica	Prupe.3G066500_v2.0.a1 Prupe.3G066500_v2.0.a1
pyrus_communis	pycom09g12530
rosa_chinensis	RchiOBHm_Chr7g0217621
rosa_laevigata	RLG00000002456
rosa_roxburghii	Rroxscaffold_3G00241800
rosa_rugosa	Rorug07G0170400
rosa_samantha	Rh7AG310500 Rh7BG301800 Rh7CG329500 Rh7DG310600
rosa_wichuraiana	Rw7G026360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	37
AluBI	AGCT	6 cut(s)	21, 71, 82, 150, 224, 248
AluI	AGCT	6 cut(s)	21, 71, 82, 150, 224, 248
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	137, 245
ApoI	RAATTY	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	124, 257
BceAI	ACGGC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	141, 320
BisI	GCNGC	3 cut(s)	138, 246, 302
BlsI	GCNGC	3 cut(s)	139, 247, 303
BmgT120I	GGNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	2 cut(s)	184, 201
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	124, 257
BshFI	GGCC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	183, 202
BspPI	GGATC	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	170, 210
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 263
BstV1I	GCAGC	2 cut(s)	124, 257
BsuRI	GGCC	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	170, 210
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraI	TTTAAA	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
FaiI	YATR	2 cut(s)	176, 356
Fnu4HI	GCNGC	3 cut(s)	138, 246, 302
Fsp4HI	GCNGC	3 cut(s)	138, 246, 302
FspBI	CTAG	2 cut(s)	141, 320
GluI	GCNGC	3 cut(s)	138, 246, 302
HaeIII	GGCC	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	4 cut(s)	154, 192, 211, 279
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	2 cut(s)	17, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 263
HpyF3I	CTNAG	2 cut(s)	170, 210
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	1 cut(s)	99
Lsp1109I	GCAGC	2 cut(s)	124, 257
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	2 cut(s)	141, 320
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	2 cut(s)	63, 336
MfeI	CAATTG	1 cut(s)	288
MluCI	AATT	3 cut(s)	205, 288, 323
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	5 cut(s)	36, 126, 169, 175, 205
MseI	TTAA	2 cut(s)	99, 180
MspA1I	CMGCKG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	254, 263
NdeII	GATC	1 cut(s)	214
PctI	GAATGC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	139, 247, 303
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	99, 180
SatI	GCNGC	3 cut(s)	138, 246, 302
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	164
SetI	ASST	9 cut(s)	23, 28, 62, 73, 84, 152, 167, 226, 250
SfaNI	GCATC	1 cut(s)	275
Sse9I	AATT	3 cut(s)	205, 288, 323
SsiI	CCGC	1 cut(s)	302
SspMI	CTAG	2 cut(s)	141, 320
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	217
TasI	AATT	3 cut(s)	205, 288, 323
TauI	GCSGC	1 cut(s)	304
Tru1I	TTAA	2 cut(s)	99, 180
Tru9I	TTAA	2 cut(s)	99, 180
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	2 cut(s)	137, 245
TspRI	CASTG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	2 cut(s)	141, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.