AT1G52230

photosystem I

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013380
Physical Location & Seq
Forward (+)
19454798 .. 19455668
871 bp
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UTR
Exon/CDS
Intron
AT1G52230.1

Sequence Viewer

Length: 438 bp
ATGGCGTCTTTTGCAACCATCGCCGCCGTACAACCTTCTGCCGCCGTGAAAGGACTTGGAGGTAGCTCTCTTGCCGGAGCTAAGCTCTTCATCAAACCTTCTCGCCAAAGCTTCAAAACCAAATCCACCAGAGCTGGTGCTGTGGTGGCTAAGTATGGAGACAAAAGTGTATACTTTGATTTAGAAGATTTGGGTAACACAACAGGACAATGGGATGTGTATGGATCTGATGCTCCTTCTCCTTATAACCCACTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCTTTCACAAAGAGAGGTTTGCTTCTCAAATTTTTGATTCTTGGAGGAGGCTCTTTGCTTACATATGTTAGTGCGAACTCTACCGGCGATGTTCTTCCGATTAAGAGAGGTCCTCAAGAGCCACCTAAGCTCGGTCCTCGCGGCAAGCTTTAA

Protein Analysis

145

Amino Acids

15.27

Weight (kDa)

9.9

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSI_PsaH PF03244 7 - 145 1.9e-73 Photosystem I reaction centre subunit VI
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52230 AT3G16140
fragaria_vesca FvH4_6g31740
malus_domestica MD09G1209500.v1.1
prunus_persica Prupe.3G067400_v2.0.a1
pyrus_communis pycom09g12570 pycom17g19830
rosa_chinensis RchiOBHm_Chr2g0138931
rosa_laevigata RLG00000019769
rosa_multiflora Rmu_sc0001376.1_g000002
rosa_roxburghii Rroxscaffold_2G00105860
rosa_rugosa Rorug02G0353200 Rorug02G0353300
rosa_samantha Rh2AG403300 Rh2BG413800 Rh2CG389400 Rh2DG423600
rosa_wichuraiana Rw2G032810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 426
AciI CCGC 3 cut(s) 24, 42, 426
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 314
AcuI CTGAAG 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 7 cut(s) 66, 80, 85, 111, 134, 415, 433
AluI AGCT 7 cut(s) 66, 80, 85, 111, 134, 415, 433
Alw26I GTCTC 2 cut(s) 153, 266
AlwI GGATC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 395, 419
AvaII GGWCC 2 cut(s) 395, 419
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 26
BceAI ACGGC 2 cut(s) 11, 29
BcoDI GTCTC 2 cut(s) 153, 266
BisI GCNGC 4 cut(s) 24, 42, 282, 427
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 4 cut(s) 25, 43, 283, 428
Bme18I GGWCC 2 cut(s) 395, 419
BmgT120I GGNCC 2 cut(s) 395, 419
BmsI GCATC 1 cut(s) 220
BplI GAGNNNNNCTC 4 cut(s) 69, 101, 382, 414
Bpu10I CCTNAGC 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse118I RCCGGY 1 cut(s) 368
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 268
Bsh1236I CGCG 1 cut(s) 426
BsiSI CCGG 2 cut(s) 75, 369
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 2 cut(s) 153, 266
Bsp143I GATC 1 cut(s) 224
Bsp1720I GCTNAGC 1 cut(s) 81
BspACI CCGC 3 cut(s) 24, 42, 426
BspFNI CGCG 1 cut(s) 426
BspPI GGATC 1 cut(s) 232
BspQI GCTCTTC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 368
BssMI GATC 1 cut(s) 224
BssNAI GTATAC 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 5
Bst1107I GTATAC 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 431
BstDEI CTNAG 3 cut(s) 81, 150, 411
BstF5I GGATG 1 cut(s) 220
BstFNI CGCG 1 cut(s) 426
BstKTI GATC 1 cut(s) 227
BstMAI GTCTC 2 cut(s) 153, 266
BstMBI GATC 1 cut(s) 224
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 146, 412
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BstZ17I GTATAC 1 cut(s) 172
BtgZI GCGATG 2 cut(s) 4, 387
BtsCI GGATG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 2 cut(s) 395, 419
Csp6I GTAC 1 cut(s) 29
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 3 cut(s) 81, 150, 411
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco47I GGWCC 2 cut(s) 395, 419
Eco57I CTGAAG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 395
FaiI YATR 6 cut(s) 156, 172, 222, 246, 349, 351
FauNDI CATATG 1 cut(s) 349
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 4 cut(s) 24, 42, 282, 427
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 4 cut(s) 24, 42, 282, 427
GluI GCNGC 4 cut(s) 24, 42, 282, 427
HapII CCGG 2 cut(s) 75, 369
Hin1I GRCGYC 1 cut(s) 5
HindIII AAGCTT 2 cut(s) 109, 431
HinfI GANTC 1 cut(s) 322
HpaII CCGG 2 cut(s) 75, 369
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 3 cut(s) 229, 258, 384
Hpy188III TCNNGA 1 cut(s) 401
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 3 cut(s) 45, 108, 246
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 146, 412
HpyF3I CTNAG 3 cut(s) 81, 150, 411
Hsp92I GRCGYC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 224
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 3 cut(s) 77, 238, 289
LpnPI CCDG 5 cut(s) 88, 120, 142, 189, 382
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 1 cut(s) 220
MaeIII GTNAC 1 cut(s) 194
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 3 cut(s) 79, 197, 371
MflI RGATCY 1 cut(s) 224
MluCI AATT 1 cut(s) 314
MnlI CCTC 7 cut(s) 53, 293, 323, 326, 386, 408, 432
MseI TTAA 2 cut(s) 387, 436
MspI CCGG 2 cut(s) 75, 369
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 146, 412
NdeI CATATG 1 cut(s) 349
NdeII GATC 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 4 cut(s) 25, 43, 283, 428
PpuMI RGGWCCY 1 cut(s) 395
PsiI TTATAA 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 395
PspPI GGNCC 2 cut(s) 395, 419
PspPPI RGGWCCY 1 cut(s) 395
PsuI RGATCY 1 cut(s) 224
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 387, 436
SatI GCNGC 4 cut(s) 24, 42, 282, 427
Sau3AI GATC 1 cut(s) 224
Sau96I GGNCC 2 cut(s) 395, 419
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 2 cut(s) 395, 419
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 1 cut(s) 314
SsiI CCGC 3 cut(s) 24, 42, 426
TaqII GACCGA 1 cut(s) 407
TasI AATT 1 cut(s) 314
TauI GCSGC 3 cut(s) 26, 44, 429
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 2 cut(s) 387, 436
Tru9I TTAA 2 cut(s) 387, 436
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 79
VpaK11BI GGWCC 2 cut(s) 395, 419
XapI RAATTY 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.