Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013380

Physical Location & Seq

Genomic Coordinates Reverse (-)

5467987 .. 5469594

Gene Structure 1608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGTCTCTTGCAACCGTCGCCGCTGTGAAACCATCCGCCGCCATAAAAGGACTCGGCGGCAGCTCACTCGCCGGAGCTAAGCTCTCCATCAAGCCTTCCCGCCTGAGCTTTAAACCCAAATCCATCCGGGCTAATGGTGTGGTGGCTAAGTATGGAGACAAAAGTGTCTACTTTGACTTAGAAGATTTGGGTAACACAACAGGTCAATGGGACGTATACGGCTCTGATGCTCCTTCTCCTTACAATCCTCTTCAGAGCAAGTTCTTTGAGACATTCGCTGCCCCATTCACAAAGAGAGGATTGCTCCTCAAGTTCTTGATCCTTGGAGGAGGCTCTTTGCTTACTTATGTCAGCGCTACCTCTACCGGCGAAGTTCTTCCCATCAAGAGAGGTCCTCAGGAGCCGCCTAAGCTCGGTCCTCGCGGCAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PsaH

Protein Analysis

145

Amino Acids

15.22

Weight (kDa)

9.95

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_PsaH	PF03244	7 - 145	9.2e-71	Photosystem I reaction centre subunit VI

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52230 AT3G16140
fragaria_vesca	FvH4_6g31740
malus_domestica	MD09G1209500.v1.1
prunus_persica	Prupe.3G067400_v2.0.a1
pyrus_communis	pycom09g12570 pycom17g19830
rosa_chinensis	RchiOBHm_Chr2g0138931
rosa_laevigata	RLG00000019769
rosa_multiflora	Rmu_sc0001376.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105860
rosa_rugosa	Rorug02G0353200 Rorug02G0353300
rosa_samantha	Rh2AG403300 Rh2BG413800 Rh2CG389400 Rh2DG423600
rosa_wichuraiana	Rw2G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AccI	GTMKAC	2 cut(s)	171, 219
AccII	CGCG	1 cut(s)	426
AciI	CCGC	7 cut(s)	24, 39, 42, 60, 103, 407, 426
AclWI	GGATC	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	416
AluBI	AGCT	6 cut(s)	66, 80, 85, 111, 415, 433
AluI	AGCT	6 cut(s)	66, 80, 85, 111, 415, 433
Alw26I	GTCTC	3 cut(s)	12, 153, 266
AlwI	GGATC	1 cut(s)	316
Aor51HI	AGCGCT	1 cut(s)	358
ApeKI	GCWGC	2 cut(s)	63, 281
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	395, 419
AsuC2I	CCSGG	1 cut(s)	131
AvaII	GGWCC	2 cut(s)	395, 419
AxyI	CCTNAGG	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	75, 268
BccI	CCATC	4 cut(s)	43, 98, 134, 392
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	3 cut(s)	12, 153, 266
BfoI	RGCGCY	1 cut(s)	360
BisI	GCNGC	7 cut(s)	24, 42, 61, 64, 282, 407, 427
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	7 cut(s)	25, 43, 62, 65, 283, 408, 428
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	2 cut(s)	395, 419
BmgT120I	GGNCC	2 cut(s)	395, 419
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	220
BplI	GAGNNNNNCTC	6 cut(s)	69, 101, 291, 323, 382, 414
Bpu10I	CCTNAGC	2 cut(s)	107, 411
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse118I	RCCGGY	1 cut(s)	368
Bse21I	CCTNAGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	2 cut(s)	35, 126
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMII	CTCAG	2 cut(s)	98, 413
BseRI	GAGGAG	2 cut(s)	299, 345
BseXI	GCAGC	2 cut(s)	75, 268
Bsh1236I	CGCG	1 cut(s)	426
BsiSI	CCGG	3 cut(s)	75, 130, 369
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	3 cut(s)	12, 153, 266
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	321
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	7 cut(s)	24, 39, 42, 60, 103, 407, 426
BspCNI	CTCAG	2 cut(s)	99, 412
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	1 cut(s)	321
BssNAI	GTATAC	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	325
Bst1107I	GTATAC	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	431
BstDEI	CTNAG	6 cut(s)	81, 107, 150, 181, 399, 411
BstF5I	GGATG	2 cut(s)	35, 126
BstFNI	CGCG	1 cut(s)	426
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	3 cut(s)	12, 153, 266
BstMBI	GATC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 412
BstSCI	CCNGG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	2 cut(s)	75, 268
BstZ17I	GTATAC	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	399
BtsCI	GGATG	2 cut(s)	35, 126
Cac8I	GCNNGC	1 cut(s)	431
CfoI	GCGC	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	395, 419
DdeI	CTNAG	6 cut(s)	81, 107, 150, 181, 399, 411
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
DraI	TTTAAA	1 cut(s)	115
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	395, 419
Eco47III	AGCGCT	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	239
Eco81I	CCTNAGG	1 cut(s)	399
EcoO109I	RGGNCCY	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	12
FaiI	YATR	4 cut(s)	47, 156, 220, 351
FaqI	GGGAC	1 cut(s)	227
FauI	CCCGC	1 cut(s)	110
FblI	GTMKAC	2 cut(s)	171, 219
Fnu4HI	GCNGC	7 cut(s)	24, 42, 61, 64, 282, 407, 427
FokI	GGATG	2 cut(s)	22, 113
Fsp4HI	GCNGC	7 cut(s)	24, 42, 61, 64, 282, 407, 427
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	7 cut(s)	24, 42, 61, 64, 282, 407, 427
HaeII	RGCGCY	1 cut(s)	360
HapII	CCGG	3 cut(s)	75, 130, 369
HhaI	GCGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	3 cut(s)	75, 130, 369
Hpy166II	GTNNAC	2 cut(s)	172, 220
Hpy188I	TCNGA	3 cut(s)	229, 258, 437
Hpy188III	TCNNGA	3 cut(s)	319, 388, 401
Hpy8I	GTNNAC	2 cut(s)	172, 220
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	108, 246
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 412
HpyF3I	CTNAG	6 cut(s)	81, 107, 150, 181, 399, 411
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	4 cut(s)	77, 238, 312, 403
LpnPI	CCDG	6 cut(s)	88, 119, 143, 189, 382, 386
Lsp1109I	GCAGC	2 cut(s)	75, 268
LweI	GCATC	1 cut(s)	220
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	3 cut(s)	197, 245, 371
MlyI	GAGTC	1 cut(s)	48
MnlI	CCTC	9 cut(s)	261, 293, 320, 323, 326, 373, 386, 408, 432
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	3 cut(s)	75, 130, 369
MspR9I	CCNGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 412
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	321
NlaIV	GGNNCC	1 cut(s)	405
NmeAIII	GCCGAG	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	378
PkrI	GCNGC	7 cut(s)	25, 43, 62, 65, 283, 408, 428
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	395, 419
PspPPI	RGGWCCY	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	7 cut(s)	24, 42, 61, 64, 282, 407, 427
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	2 cut(s)	395, 419
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	131
SfaNI	GCATC	1 cut(s)	220
SinI	GGWCC	2 cut(s)	395, 419
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SsiI	CCGC	7 cut(s)	24, 39, 42, 60, 103, 407, 426
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	219
TaqII	GACCGA	1 cut(s)	407
TauI	GCSGC	5 cut(s)	26, 44, 63, 409, 429
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseI	GCWGC	2 cut(s)	63, 281
VpaK11BI	GGWCC	2 cut(s)	395, 419
XmiI	GTMKAC	2 cut(s)	171, 219
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.