Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013380

Physical Location & Seq

Genomic Coordinates Forward (+)

44383046 .. 44384141

Gene Structure 1096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0353200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCCCTGTGGGATGCAAATCATGCAATTCGAACCAAGCTTAGCAAGTTACCCAGAAATCCGAAATCGAACCCACCTGAAGAATCTGAAATCAACAGGCATGCTGTATCTGATCAATATTTCACGGGCGGTCGAAACACCAACACCACCACAAGTAGTACCAGCAGCGCCGCCAGCATGCAATCCACCAAGAAGCAACAGCTGGCGGCCATTTCCAACTGGTTCGTCACCGAGAAAAAGCACAACAACAAGCGGAGATCCAAACCCAGCCGAGTGAGGAGCACGAGATCGTCGCTGTCGTCGTTCTCCTGCCACGTTCCCGACGAGGATCGCGAGCTCCTGCTCCCGCTTGAGGCCGTCGATGTGTCGTCAGCGGTGCCGGATACGACGTCGTTCAAGGCTGACCGGAGCGTTGACCGGCAGGTGTCGCTGCCGAGGGTGTCGAGCGGGAGTAGCTACGCCGGGAGCTTGTACTCTGGGACGACGACCCAGGATGGGAACTTCTCCGGCAACGTCAAGGAGTCGTTGGCGACGACGAGGCCGGTGGAGGAAGAGGAGGAAGAGGAGGAGGTGGTGGGAGTGGAGGCGAGTAGGGATAGCTTGGCTCAGAGGGACGGGGTGGAGGCGCCTAGCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PsaH

Protein Analysis

212

Amino Acids

23.13

Weight (kDa)

6.13

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52230 AT3G16140
fragaria_vesca	FvH4_6g31740
malus_domestica	MD09G1209500.v1.1
prunus_persica	Prupe.3G067400_v2.0.a1
pyrus_communis	pycom09g12570 pycom17g19830
rosa_chinensis	RchiOBHm_Chr2g0138931
rosa_laevigata	RLG00000019769
rosa_multiflora	Rmu_sc0001376.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105860
rosa_rugosa	Rorug02G0353200 Rorug02G0353300
rosa_samantha	Rh2AG403300 Rh2BG413800 Rh2CG389400 Rh2DG423600
rosa_wichuraiana	Rw2G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	412
AatII	GACGTC	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	412
AccB1I	GGYRCC	2 cut(s)	376, 625
AccBSI	CCGCTC	1 cut(s)	447
AccII	CGCG	1 cut(s)	333
AciI	CCGC	7 cut(s)	129, 171, 206, 253, 347, 374, 447
AclWI	GGATC	2 cut(s)	252, 336
AcoI	YGGCCR	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	99
AcyI	GRCGYC	2 cut(s)	389, 626
AfaI	GTAC	2 cut(s)	160, 473
AfiI	CCNNNNNNNGG	2 cut(s)	352, 495
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	6 cut(s)	40, 202, 337, 456, 468, 600
AluI	AGCT	6 cut(s)	40, 202, 337, 456, 468, 600
Alw21I	GWGCWC	2 cut(s)	284, 339
AlwI	GGATC	2 cut(s)	252, 336
AoxI	GGCC	4 cut(s)	3, 207, 354, 539
ApeKI	GCWGC	2 cut(s)	165, 430
AspLEI	GCGC	3 cut(s)	170, 628, 635
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	31
BanI	GGYRCC	2 cut(s)	376, 625
BanII	GRGCYC	1 cut(s)	339
BauI	CACGAG	1 cut(s)	283
Bbv12I	GWGCWC	2 cut(s)	284, 339
BbvI	GCAGC	2 cut(s)	177, 417
BccI	CCATC	1 cut(s)	488
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	491
BciVI	GTATCC	1 cut(s)	376
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	463
BfaI	CTAG	2 cut(s)	630, 637
BfoI	RGCGCY	3 cut(s)	171, 629, 636
BfuAI	ACCTGC	1 cut(s)	412
BfuI	GTATCC	1 cut(s)	376
BisI	GCNGC	4 cut(s)	166, 171, 207, 431
BlpI	GCTNAGC	1 cut(s)	41
BlsI	GCNGC	4 cut(s)	167, 172, 208, 432
Bme1390I	CCNGG	2 cut(s)	463, 491
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	378, 627
BmrFI	CCNGG	2 cut(s)	463, 491
BmsI	GCATC	1 cut(s)	4
Bpu1102I	GCTNAGC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	18
BsaHI	GRCGYC	2 cut(s)	389, 626
BsaJI	CCNNGG	2 cut(s)	434, 489
BsaWI	WCCGGW	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 495
Bse118I	RCCGGY	2 cut(s)	417, 541
Bse1I	ACTGG	1 cut(s)	224
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	434, 489
BseGI	GGATG	2 cut(s)	19, 499
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	352, 495
BseMII	CTCAG	1 cut(s)	620
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	4 cut(s)	292, 569, 578, 581
BseXI	GCAGC	2 cut(s)	177, 417
BseYI	CCCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	4 cut(s)	5, 209, 356, 541
BshNI	GGYRCC	2 cut(s)	376, 625
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	284, 339
BsiSI	CCGG	6 cut(s)	380, 406, 418, 462, 507, 542
BslFI	GGGAC	2 cut(s)	493, 626
BslI	CCNNNNNNNGG	2 cut(s)	352, 495
BsmFI	GGGAC	2 cut(s)	493, 626
BsnI	GGCC	4 cut(s)	5, 209, 356, 541
Bsp119I	TTCGAA	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	284, 339
Bsp143I	GATC	4 cut(s)	112, 257, 287, 328
Bsp1720I	GCTNAGC	1 cut(s)	41
Bsp68I	TCGCGA	1 cut(s)	333
BspACI	CCGC	7 cut(s)	129, 171, 206, 253, 347, 374, 447
BspANI	GGCC	4 cut(s)	5, 209, 356, 541
BspCNI	CTCAG	1 cut(s)	619
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	378, 627
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	252, 336
BspT104I	TTCGAA	1 cut(s)	31
BspT107I	GGYRCC	2 cut(s)	376, 625
BsrBI	CCGCTC	1 cut(s)	447
BsrFI	RCCGGY	2 cut(s)	417, 541
BsrI	ACTGG	1 cut(s)	224
BssAI	RCCGGY	2 cut(s)	417, 541
BssECI	CCNNGG	2 cut(s)	434, 489
BssMI	GATC	4 cut(s)	112, 257, 287, 328
BssNI	GRCGYC	2 cut(s)	389, 626
BssSI	CACGAG	1 cut(s)	283
Bst2BI	CACGAG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	491
Bst6I	CTCTTC	2 cut(s)	546, 555
BstACI	GRCGYC	2 cut(s)	389, 626
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	31
BstC8I	GCNNGC	5 cut(s)	102, 175, 179, 204, 335
BstDEI	CTNAG	2 cut(s)	41, 606
BstF5I	GGATG	2 cut(s)	19, 499
BstFNI	CGCG	1 cut(s)	333
BstH2I	RGCGCY	3 cut(s)	171, 629, 636
BstHHI	GCGC	3 cut(s)	170, 628, 635
BstKTI	GATC	4 cut(s)	115, 260, 290, 331
BstMBI	GATC	4 cut(s)	112, 257, 287, 328
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 174, 427, 453, 632
BstNI	CCWGG	1 cut(s)	491
BstNSI	RCATGY	2 cut(s)	104, 181
BstSCI	CCNGG	2 cut(s)	461, 489
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	177, 417
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	4 cut(s)	5, 209, 356, 541
BtsCI	GGATG	2 cut(s)	19, 499
BtuMI	TCGCGA	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	5 cut(s)	102, 175, 179, 204, 335
CfoI	GCGC	3 cut(s)	170, 628, 635
Cfr10I	RCCGGY	2 cut(s)	417, 541
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	159, 472
CviAII	CATG	3 cut(s)	23, 101, 178
CviQI	GTAC	2 cut(s)	159, 472
DdeI	CTNAG	2 cut(s)	41, 606
DinI	GGCGCC	1 cut(s)	627
DpnI	GATC	4 cut(s)	114, 259, 289, 330
DpnII	GATC	4 cut(s)	112, 257, 287, 328
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	546, 555
EarI	CTCTTC	2 cut(s)	546, 555
Ecl136II	GAGCTC	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	339
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	339
EgeI	GGCGCC	1 cut(s)	627
EheI	GGCGCC	1 cut(s)	627
FaeI	CATG	3 cut(s)	26, 104, 181
FaiI	YATR	3 cut(s)	24, 102, 179
FaqI	GGGAC	2 cut(s)	493, 626
FatI	CATG	3 cut(s)	22, 100, 177
FauI	CCCGC	2 cut(s)	354, 440
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	4 cut(s)	166, 171, 207, 431
FokI	GGATG	2 cut(s)	26, 506
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	4 cut(s)	166, 171, 207, 431
FspBI	CTAG	2 cut(s)	630, 637
GlaI	GCGC	3 cut(s)	169, 627, 634
GluI	GCNGC	4 cut(s)	166, 171, 207, 431
GsaI	CCCAGC	1 cut(s)	270
HaeII	RGCGCY	3 cut(s)	171, 629, 636
HaeIII	GGCC	4 cut(s)	5, 209, 356, 541
HapII	CCGG	6 cut(s)	380, 406, 418, 462, 507, 542
HhaI	GCGC	3 cut(s)	170, 628, 635
Hin1I	GRCGYC	2 cut(s)	389, 626
Hin1II	CATG	3 cut(s)	26, 104, 181
Hin6I	GCGC	3 cut(s)	168, 626, 633
HinP1I	GCGC	3 cut(s)	168, 626, 633
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	2 cut(s)	83, 521
HpaII	CCGG	6 cut(s)	380, 406, 418, 462, 507, 542
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	4 cut(s)	63, 88, 112, 609
Hpy188III	TCNNGA	2 cut(s)	320, 332
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	9 cut(s)	295, 304, 326, 362, 391, 394, 487, 535, 538
HpyCH4IV	ACGT	3 cut(s)	315, 389, 513
HpyCH4V	TGCA	3 cut(s)	17, 26, 181
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 174, 427, 453, 632
HpyF3I	CTNAG	2 cut(s)	41, 606
HpySE526I	ACGT	3 cut(s)	315, 389, 513
Hsp92I	GRCGYC	2 cut(s)	389, 626
Hsp92II	CATG	3 cut(s)	26, 104, 181
HspAI	GCGC	3 cut(s)	168, 626, 633
KasI	GGCGCC	1 cut(s)	625
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	112, 257, 287, 328
LmnI	GCTCC	5 cut(s)	279, 342, 348, 408, 465
Lsp1109I	GCAGC	2 cut(s)	177, 417
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	630, 637
MaeII	ACGT	3 cut(s)	315, 389, 513
MaeIII	GTNAC	2 cut(s)	48, 226
MalI	GATC	4 cut(s)	114, 259, 289, 330
MbiI	CCGCTC	1 cut(s)	447
MboI	GATC	4 cut(s)	112, 257, 287, 328
MboII	GAAGA	3 cut(s)	92, 563, 572
MflI	RGATCY	1 cut(s)	257
MhlI	GDGCHC	2 cut(s)	284, 339
MluCI	AATT	1 cut(s)	27
Mly113I	GGCGCC	1 cut(s)	626
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	240
MspA1I	CMGCKG	2 cut(s)	202, 374
MspI	CCGG	6 cut(s)	380, 406, 418, 462, 507, 542
MspR9I	CCNGG	2 cut(s)	463, 491
MvaI	CCWGG	1 cut(s)	491
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	5 cut(s)	23, 174, 427, 453, 632
NarI	GGCGCC	1 cut(s)	626
NciI	CCSGG	1 cut(s)	463
NdeII	GATC	4 cut(s)	112, 257, 287, 328
NlaIII	CATG	3 cut(s)	26, 104, 181
NlaIV	GGNNCC	2 cut(s)	378, 627
NmeAIII	GCCGAG	2 cut(s)	296, 459
NmuCI	GTSAC	1 cut(s)	226
NruI	TCGCGA	1 cut(s)	333
NspI	RCATGY	2 cut(s)	104, 181
NspV	TTCGAA	1 cut(s)	31
PaeI	GCATGC	2 cut(s)	104, 181
PaqCI	CACCTGC	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	5 cut(s)	296, 299, 321, 330, 530
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	4 cut(s)	167, 172, 208, 432
PleI	GAGTC	1 cut(s)	529
PluTI	GGCGCC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	529
Psp124BI	GAGCTC	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	2 cut(s)	378, 627
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	202
RruI	TCGCGA	1 cut(s)	333
RsaI	GTAC	2 cut(s)	160, 473
RsaNI	GTAC	2 cut(s)	159, 472
SacI	GAGCTC	1 cut(s)	339
SatI	GCNGC	4 cut(s)	166, 171, 207, 431
Sau3AI	GATC	4 cut(s)	112, 257, 287, 328
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	2 cut(s)	463, 491
SduI	GDGCHC	2 cut(s)	284, 339
SfaNI	GCATC	1 cut(s)	4
SfoI	GGCGCC	1 cut(s)	627
SfuI	TTCGAA	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SphI	GCATGC	2 cut(s)	104, 181
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	7 cut(s)	129, 171, 206, 253, 347, 374, 447
SspDI	GGCGCC	1 cut(s)	625
SspI	AATATT	1 cut(s)	119
SspMI	CTAG	2 cut(s)	630, 637
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	461, 489
TaiI	ACGT	3 cut(s)	318, 392, 516
TaqI	TCGA	5 cut(s)	31, 68, 133, 360, 443
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	2 cut(s)	173, 209
TfiI	GAWTC	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	165, 430
Tsp45I	GTSAC	1 cut(s)	226
XceI	RCATGY	2 cut(s)	104, 181
XspI	CTAG	2 cut(s)	630, 637
ZraI	GACGTC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.