Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001376.1

Orthogroup ID

OG0013380

Physical Location & Seq

Genomic Coordinates Reverse (-)

4931 .. 6117

Gene Structure 1187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001376.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggcatctttggcaaccttggcagcagttcaaccagccaccatcaacggccttggaggaagctccctctccgggactaagctcgtcgtcaagcccactcgccagaccctcagacccagaaatgtcaggagtggtgctgtggtggccaagtatggtgacaaaagtgtttactttgaccttgaggatctgggcaacaccactggaaaatgggacttgtacggctcagatgccccctcaccttacaaccctcttcagagcaagttctttgagacatttgctgctccattcaccaagagagggttgctgctcaagttcttgatcttgggaggggcttccaccattgcttaccttagtgccactgcctcagatgaccttctacccattaagaagggcccacaacttcccccaaagctgggaccacgtggcaagctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PsaH

Protein Analysis

144

Amino Acids

15.24

Weight (kDa)

9.94

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52230 AT3G16140
fragaria_vesca	FvH4_6g31740
malus_domestica	MD09G1209500.v1.1
prunus_persica	Prupe.3G067400_v2.0.a1
pyrus_communis	pycom09g12570 pycom17g19830
rosa_chinensis	RchiOBHm_Chr2g0138931
rosa_laevigata	RLG00000019769
rosa_multiflora	Rmu_sc0001376.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105860
rosa_rugosa	Rorug02G0353200 Rorug02G0353300
rosa_samantha	Rh2AG403300 Rh2BG413800 Rh2CG389400 Rh2DG423600
rosa_wichuraiana	Rw2G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	236
AcvI	CACGTG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	4 cut(s)	72, 297, 412, 413
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	4 cut(s)	63, 82, 412, 430
AluI	AGCT	4 cut(s)	63, 82, 412, 430
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	3 cut(s)	49, 144, 391
ApaI	GGGCCC	1 cut(s)	395
ApeKI	GCWGC	3 cut(s)	23, 278, 304
AspS9I	GGNCC	3 cut(s)	391, 392, 416
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	3 cut(s)	167, 228, 280
AvaII	GGWCC	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	395
BbrPI	CACGTG	1 cut(s)	422
BbvI	GCAGC	3 cut(s)	35, 265, 291
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	2 cut(s)	64, 235
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	263
BisI	GCNGC	3 cut(s)	24, 279, 305
BlsI	GCNGC	3 cut(s)	25, 280, 306
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	3 cut(s)	391, 392, 416
BmiI	GGNNCC	2 cut(s)	393, 417
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	2 cut(s)	14, 217
BpuEI	CTTGAG	2 cut(s)	200, 293
BpuMI	CCSGG	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	18, 52
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 297, 412, 413
Bse1I	ACTGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	18, 52
BseLI	CCNNNNNNNGG	4 cut(s)	72, 297, 412, 413
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	3 cut(s)	124, 237, 378
BseNI	ACTGG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	3 cut(s)	35, 265, 291
BseYI	CCCAGC	1 cut(s)	412
BshFI	GGCC	3 cut(s)	51, 146, 393
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	3 cut(s)	88, 224, 429
BslI	CCNNNNNNNGG	4 cut(s)	72, 297, 412, 413
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	3 cut(s)	88, 224, 429
BsnI	GGCC	3 cut(s)	51, 146, 393
Bsp120I	GGGCCC	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	184, 318
BspANI	GGCC	3 cut(s)	51, 146, 393
BspCNI	CTCAG	3 cut(s)	123, 236, 377
BspLI	GGNNCC	2 cut(s)	393, 417
BspPI	GGATC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	18, 52
BssMI	GATC	2 cut(s)	184, 318
BssT1I	CCWWGG	2 cut(s)	18, 52
Bst6I	CTCTTC	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	5 cut(s)	78, 110, 223, 350, 364
BstKTI	GATC	2 cut(s)	187, 321
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	2 cut(s)	184, 318
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 143
BstSCI	CCNGG	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	395
BstV1I	GCAGC	3 cut(s)	35, 265, 291
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	51, 146, 393
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	2 cut(s)	198, 357
Cac8I	GCNNGC	1 cut(s)	428
Cfr13I	GGNCC	3 cut(s)	391, 392, 416
Csp6I	GTAC	1 cut(s)	217
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	5 cut(s)	78, 110, 223, 350, 364
DpnI	GATC	2 cut(s)	186, 320
DpnII	GATC	2 cut(s)	184, 318
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	2 cut(s)	18, 52
Eco24I	GRGCYC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	236
Eco72I	CACGTG	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	18, 52
EcoT38I	GRGCYC	1 cut(s)	395
ErhI	CCWWGG	2 cut(s)	18, 52
FaiI	YATR	1 cut(s)	153
FaqI	GGGAC	3 cut(s)	88, 224, 429
Fnu4HI	GCNGC	3 cut(s)	24, 279, 305
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	3 cut(s)	24, 279, 305
GluI	GCNGC	3 cut(s)	24, 279, 305
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	3 cut(s)	51, 146, 393
HapII	CCGG	1 cut(s)	72
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	3 cut(s)	167, 228, 280
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	5 cut(s)	113, 226, 255, 367, 434
Hpy188III	TCNNGA	2 cut(s)	127, 316
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	382, 383
HpyCH4IV	ACGT	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 143
HpyF3I	CTNAG	5 cut(s)	78, 110, 223, 350, 364
HpySE526I	ACGT	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	184, 318
LmnI	GCTCC	2 cut(s)	68, 286
LpnPI	CCDG	8 cut(s)	48, 85, 112, 116, 130, 173, 186, 398
Lsp1109I	GCAGC	3 cut(s)	35, 265, 291
LweI	GCATC	2 cut(s)	14, 217
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	186, 320
MboI	GATC	2 cut(s)	184, 318
MboII	GAAGA	1 cut(s)	242
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	395
MlsI	TGGCCA	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	146
MnlI	CCTC	9 cut(s)	50, 77, 119, 175, 244, 258, 290, 320, 373
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	146
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 143
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	2 cut(s)	184, 318
NlaIV	GGNNCC	2 cut(s)	393, 417
NmuCI	GTSAC	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	25, 280, 306
PmaCI	CACGTG	1 cut(s)	422
PmlI	CACGTG	1 cut(s)	422
Ppu21I	YACGTR	1 cut(s)	422
PspCI	CACGTG	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	393, 417
PspOMI	GGGCCC	1 cut(s)	391
PspPI	GGNCC	3 cut(s)	391, 392, 416
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	3 cut(s)	24, 279, 305
Sau3AI	GATC	2 cut(s)	184, 318
Sau96I	GGNCC	3 cut(s)	391, 392, 416
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	2 cut(s)	14, 217
SinI	GGWCC	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	179, 308
SmoI	CTYRAG	2 cut(s)	179, 308
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	18, 52
TaiI	ACGT	1 cut(s)	424
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	2 cut(s)	205, 364
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	23, 278, 304
Tsp45I	GTSAC	1 cut(s)	155
TspRI	CASTG	2 cut(s)	205, 364
VpaK11BI	GGWCC	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.