Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013380

Physical Location & Seq

Genomic Coordinates Reverse (-)

44410371 .. 44411828

Gene Structure 1458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0353300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGACTGAAAATCAGCCGGCTGGTGATGGAGAAACAGACCTCAGTAATGAGTGTAAGGAACTCCTTTCTCTCCCCAAAGAAAGAGGCTGGATATCCCTTCACCAACATCAATACCAAGGCTTTTGGTGCCCAACAGAAATATTCCAAGGCATAATCGCTTTCCAAAAGCACTTCCAAGCTAGGGACTCCGATATAGTTGTGGCCAGCGTACCCAAATCCGGCACCACATGGTTGAAAGCCTTGATTTTTGCTATTGTGAATCGACAACGTTTCGAAATAAAGATCCATCCCTTGCTCACTTCCAACTCTCATAATCTTGTCCCCTTCTTAGAGGTGGATCTCTATAGAAACAACCTAGTTCCTGATTTCTCATCCAAGTTTCCTGAGCCAAGACTCTTTGCGACCCATATTCCTTTTCCTTCTTTGGGTACAATTAAAGAGTCCAATTGTAAGATCGTTTATGTTTGCAGAAACCCATTCGACTCATTTGTTTCTCTTTGGCATTTCTGTAACAAAGTCAGGCCACAATCTTTAGCTCCATTGTCCCTTGATGAGGCCTTTGATATGTATTGCCAAGGCATGGATGTGTATGGTCCATTTTGGGATCACATGTTGGGGTACTGGAAAGAGAGCTTCAAGAGACCTAACAATGTGTTATTCTTGAAGTACGAGGACATGAAGAAAGATGGTGTAAATCACTTGAAAACATTGGCCAAGTTTTTGGACTGCCCTTTCACTGAGGAGGAGGAGAGAAACGGTGTGATTGAAGACATAGCAAAGCTCTGTTCTTTTGAGACCATGAAGAAGTTGGAGATCAACAAAACTGGAACGTTTGTCTTGAACATGGAGAGTAAGAACCTGTTCAGAAAAGCTGAGGTGGGAGATTGGGTTAACTATTTGACCCCTATGATGGAGCAGAGAATGTCCAAAGTCATAGAAGAAAAGTTGGGTAGTTCAGGCTTGACGTTCAAAGGGACTCCCGAGCTAGCAGATCATGTCCAGCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PsaH

Protein Analysis

336

Amino Acids

38.82

Weight (kDa)

6.09

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfotransfer_1	PF00685	62 - 319	5.9e-68	Sulfotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52230 AT3G16140
fragaria_vesca	FvH4_6g31740
malus_domestica	MD09G1209500.v1.1
prunus_persica	Prupe.3G067400_v2.0.a1
pyrus_communis	pycom09g12570 pycom17g19830
rosa_chinensis	RchiOBHm_Chr2g0138931
rosa_laevigata	RLG00000019769
rosa_multiflora	Rmu_sc0001376.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105860
rosa_rugosa	Rorug02G0353200 Rorug02G0353300
rosa_samantha	Rh2AG403300 Rh2BG413800 Rh2CG389400 Rh2DG423600
rosa_wichuraiana	Rw2G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	126, 221
AccB7I	CCANNNNNTGG	1 cut(s)	580
AclI	AACGTT	2 cut(s)	268, 830
AclWI	GGATC	3 cut(s)	277, 345, 612
AcoI	YGGCCR	2 cut(s)	201, 711
AfaI	GTAC	4 cut(s)	210, 430, 620, 668
AfiI	CCNNNNNNNGG	6 cut(s)	181, 218, 425, 553, 580, 910
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	7 cut(s)	235, 637, 664, 703, 767, 841, 970
AluBI	AGCT	6 cut(s)	179, 536, 633, 781, 872, 985
AluI	AGCT	6 cut(s)	179, 536, 633, 781, 872, 985
Alw26I	GTCTC	2 cut(s)	634, 788
AlwI	GGATC	3 cut(s)	277, 345, 612
Ama87I	CYCGRG	1 cut(s)	980
AoxI	GGCC	4 cut(s)	201, 521, 555, 711
Asp700I	GAANNNNTTC	1 cut(s)	860
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	35, 92
AsuII	TTCGAA	1 cut(s)	273
AsuNHI	GCTAGC	1 cut(s)	985
AvaI	CYCGRG	1 cut(s)	980
AvaII	GGWCC	1 cut(s)	593
BaeGI	GKGCMC	1 cut(s)	131
BalI	TGGCCA	2 cut(s)	203, 713
BanI	GGYRCC	2 cut(s)	126, 221
BbsI	GAAGAC	1 cut(s)	774
BbvCI	CCTCAGC	1 cut(s)	873
BccI	CCATC	4 cut(s)	20, 294, 680, 904
BcoDI	GTCTC	2 cut(s)	634, 788
BfaI	CTAG	4 cut(s)	180, 356, 986, 1009
BfmI	CTRYAG	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	980
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	2 cut(s)	128, 223
BmtI	GCTAGC	1 cut(s)	989
BpiI	GAAGAC	1 cut(s)	774
Bpu10I	CCTNAGC	2 cut(s)	384, 873
Bpu14I	TTCGAA	1 cut(s)	273
BsaI	GGTCTC	2 cut(s)	634, 788
BsaJI	CCNNGG	3 cut(s)	115, 145, 574
BsaXI	ACNNNNNCTCC	2 cut(s)	873, 903
Bsc4I	CCNNNNNNNGG	6 cut(s)	181, 218, 425, 553, 580, 910
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	626, 829
BseDI	CCNNGG	3 cut(s)	115, 145, 574
BseGI	GGATG	3 cut(s)	286, 371, 589
BseLI	CCNNNNNNNGG	6 cut(s)	181, 218, 425, 553, 580, 910
BseMII	CTCAG	4 cut(s)	55, 375, 729, 864
BseNI	ACTGG	2 cut(s)	626, 829
BseRI	GAGGAG	3 cut(s)	755, 758, 761
BseSI	GKGCMC	1 cut(s)	131
BshFI	GGCC	4 cut(s)	203, 523, 557, 713
BshNI	GGYRCC	2 cut(s)	126, 221
BsiHKCI	CYCGRG	1 cut(s)	980
BsiSI	CCGG	2 cut(s)	17, 219
BslFI	GGGAC	4 cut(s)	197, 305, 529, 988
BslI	CCNNNNNNNGG	6 cut(s)	181, 218, 425, 553, 580, 910
BsmAI	GTCTC	2 cut(s)	634, 788
BsmFI	GGGAC	4 cut(s)	197, 305, 529, 988
BsnI	GGCC	4 cut(s)	203, 523, 557, 713
Bso31I	GGTCTC	2 cut(s)	634, 788
BsoBI	CYCGRG	1 cut(s)	980
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	6 cut(s)	282, 337, 453, 604, 813, 991
BspANI	GGCC	4 cut(s)	203, 523, 557, 713
BspCNI	CTCAG	4 cut(s)	54, 376, 730, 865
BspLI	GGNNCC	2 cut(s)	128, 223
BspOI	GCTAGC	1 cut(s)	989
BspPI	GGATC	3 cut(s)	277, 345, 612
BspT104I	TTCGAA	1 cut(s)	273
BspT107I	GGYRCC	2 cut(s)	126, 221
BspTNI	GGTCTC	2 cut(s)	634, 788
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	626, 829
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	115, 145, 574
BssMI	GATC	6 cut(s)	282, 337, 453, 604, 813, 991
BssT1I	CCWWGG	3 cut(s)	115, 145, 574
Bst4CI	ACNGT	1 cut(s)	758
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	3 cut(s)	18, 205, 987
BstDEI	CTNAG	5 cut(s)	41, 328, 384, 738, 873
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstF5I	GGATG	3 cut(s)	286, 371, 589
BstKTI	GATC	6 cut(s)	285, 340, 456, 607, 816, 994
BstMAI	GTCTC	2 cut(s)	634, 788
BstMBI	GATC	6 cut(s)	282, 337, 453, 604, 813, 991
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	613
BstSFI	CTRYAG	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	774
BstX2I	RGATCY	2 cut(s)	282, 337
BstXI	CCANNNNNNTGG	1 cut(s)	721
BstYI	RGATCY	2 cut(s)	282, 337
BsuRI	GGCC	4 cut(s)	203, 523, 557, 713
BtsCI	GGATG	3 cut(s)	286, 371, 589
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	3 cut(s)	18, 205, 987
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	593
Csp6I	GTAC	4 cut(s)	209, 429, 619, 667
CviAII	CATG	7 cut(s)	228, 580, 610, 676, 799, 844, 995
CviQI	GTAC	4 cut(s)	209, 429, 619, 667
DdeI	CTNAG	5 cut(s)	41, 328, 384, 738, 873
DpnI	GATC	6 cut(s)	284, 339, 455, 606, 815, 993
DpnII	GATC	6 cut(s)	282, 337, 453, 604, 813, 991
EaeI	YGGCCR	2 cut(s)	201, 711
Eco130I	CCWWGG	3 cut(s)	115, 145, 574
Eco147I	AGGCCT	1 cut(s)	557
Eco31I	GGTCTC	2 cut(s)	634, 788
Eco32I	GATATC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	593
Eco88I	CYCGRG	1 cut(s)	980
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoRV	GATATC	1 cut(s)	93
EcoT14I	CCWWGG	3 cut(s)	115, 145, 574
ErhI	CCWWGG	3 cut(s)	115, 145, 574
FaeI	CATG	7 cut(s)	231, 583, 613, 679, 802, 847, 998
FaqI	GGGAC	4 cut(s)	197, 305, 529, 988
FatI	CATG	7 cut(s)	227, 579, 609, 675, 798, 843, 994
FokI	GGATG	3 cut(s)	273, 358, 596
FspBI	CTAG	4 cut(s)	180, 356, 986, 1009
HaeIII	GGCC	4 cut(s)	203, 523, 557, 713
HapII	CCGG	2 cut(s)	17, 219
Hin1II	CATG	7 cut(s)	231, 583, 613, 679, 802, 847, 998
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HinfI	GANTC	6 cut(s)	185, 259, 393, 440, 482, 976
HpaI	GTTAAC	1 cut(s)	892
HpaII	CCGG	2 cut(s)	17, 219
HphI	GGTGA	2 cut(s)	35, 92
Hpy166II	GTNNAC	1 cut(s)	892
Hpy188I	TCNGA	2 cut(s)	190, 866
Hpy188III	TCNNGA	6 cut(s)	362, 383, 637, 661, 838, 980
Hpy8I	GTNNAC	1 cut(s)	892
HpyAV	CCTTC	3 cut(s)	107, 334, 429
HpyCH4III	ACNGT	1 cut(s)	758
HpyCH4IV	ACGT	3 cut(s)	268, 830, 965
HpyCH4V	TGCA	1 cut(s)	468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	5 cut(s)	41, 328, 384, 738, 873
HpySE526I	ACGT	3 cut(s)	268, 830, 965
Hsp92II	CATG	7 cut(s)	231, 583, 613, 679, 802, 847, 998
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
KspAI	GTTAAC	1 cut(s)	892
Kzo9I	GATC	6 cut(s)	282, 337, 453, 604, 813, 991
LmnI	GCTCC	2 cut(s)	541, 913
MaeI	CTAG	4 cut(s)	180, 356, 986, 1009
MaeII	ACGT	3 cut(s)	268, 830, 965
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	6 cut(s)	284, 339, 455, 606, 815, 993
MboI	GATC	6 cut(s)	282, 337, 453, 604, 813, 991
MboII	GAAGA	4 cut(s)	691, 779, 814, 950
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	2 cut(s)	282, 337
MhlI	GDGCHC	1 cut(s)	131
MlsI	TGGCCA	2 cut(s)	203, 713
MluCI	AATT	2 cut(s)	432, 445
MluNI	TGGCCA	2 cut(s)	203, 713
MlyI	GAGTC	5 cut(s)	179, 387, 449, 476, 970
MmeI	TCCRAC	2 cut(s)	327, 789
MnlI	CCTC	9 cut(s)	50, 77, 325, 547, 664, 733, 736, 739, 868
Mox20I	TGGCCA	2 cut(s)	203, 713
MroNI	GCCGGC	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	860
MscI	TGGCCA	2 cut(s)	203, 713
MseI	TTAA	2 cut(s)	435, 891
MslI	CAYNNNNRTG	1 cut(s)	584
Msp20I	TGGCCA	2 cut(s)	203, 713
MspI	CCGG	2 cut(s)	17, 219
MunI	CAATTG	1 cut(s)	445
MwoI	GCNNNNNNNGC	1 cut(s)	126
NaeI	GCCGGC	1 cut(s)	18
NdeII	GATC	6 cut(s)	282, 337, 453, 604, 813, 991
NgoMIV	GCCGGC	1 cut(s)	16
NheI	GCTAGC	1 cut(s)	985
NlaIII	CATG	7 cut(s)	231, 583, 613, 679, 802, 847, 998
NlaIV	GGNNCC	2 cut(s)	128, 223
NspI	RCATGY	1 cut(s)	613
NspV	TTCGAA	1 cut(s)	273
PceI	AGGCCT	1 cut(s)	557
PciI	ACATGT	1 cut(s)	609
PdiI	GCCGGC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	860
PfeI	GAWTC	1 cut(s)	259
PflMI	CCANNNNNTGG	1 cut(s)	580
PleI	GAGTC	5 cut(s)	179, 387, 448, 476, 970
PpsI	GAGTC	5 cut(s)	179, 387, 448, 476, 970
PscI	ACATGT	1 cut(s)	609
Psp1406I	AACGTT	2 cut(s)	268, 830
PspN4I	GGNNCC	2 cut(s)	128, 223
PspPI	GGNCC	1 cut(s)	593
PsuI	RGATCY	2 cut(s)	282, 337
RsaI	GTAC	4 cut(s)	210, 430, 620, 668
RsaNI	GTAC	4 cut(s)	209, 429, 619, 667
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	2 cut(s)	435, 891
Sau3AI	GATC	6 cut(s)	282, 337, 453, 604, 813, 991
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	5 cut(s)	179, 387, 449, 476, 970
SduI	GDGCHC	1 cut(s)	131
SfcI	CTRYAG	1 cut(s)	343
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	432, 445
SseBI	AGGCCT	1 cut(s)	557
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	4 cut(s)	180, 356, 986, 1009
StuI	AGGCCT	1 cut(s)	557
StyI	CCWWGG	3 cut(s)	115, 145, 574
TaaI	ACNGT	1 cut(s)	758
TaiI	ACGT	3 cut(s)	271, 833, 968
TaqI	TCGA	3 cut(s)	262, 273, 480
TasI	AATT	2 cut(s)	432, 445
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	435, 891
Tru9I	TTAA	2 cut(s)	435, 891
TscAI	CASTG	1 cut(s)	742
TspDTI	ATGAA	2 cut(s)	692, 815
TspRI	CASTG	1 cut(s)	742
Van91I	CCANNNNNTGG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	593
XagI	CCTNNNNNAGG	1 cut(s)	551
XceI	RCATGY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XmnI	GAANNNNTTC	1 cut(s)	860
XspI	CTAG	4 cut(s)	180, 356, 986, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.