Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011796

Physical Location & Seq

Genomic Coordinates Reverse (-)

19688708 .. 19690589

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAGAGTACAGATTCTTCCGGTGGTCCTCCGCCGCCGCAACCAAACCTCCCTCCAGGATTCCGGTTTCATCCAACAGACGAAGAACTTGTAATTCATTACCTCAAACGCAAAGCAGATTCTGTTCCTTTACCAGTCGCGATCATCGCCGACGTTGATCTTTACAAATTTGATCCATGGGAACTTCCCGCGAAAGCTTCGTTTGGAGAACAAGAATGGTATTTTTTCAGTCCAAGAGATCGGAAATATCCCAACGGAGCTAGACCTAACCGAGCTGCGACTTCCGGTTATTGGAAAGCGACTGGTACAGATAAACCGGTGATTTCAACCGGCGGTGGTGGTAGTAAAAAAGTGGGAGTTAAAAAGGCTCTAGTGTTTTACAGTGGTAAACCACCAAAAGGAGTTAAATCAGATTGGATTATGCATGAATATCGGTTAACTGATAATAAACCTACTCATATTTGTGACTTCGGCAACAAGAAAAACTCTCTCAGGCTTGATGATTGGGTGTTGTGTCGTATCTACAAGAAAAACAATAGTACAGCATCTAGACATCATCATCATCTTCATCATATTCATCTAGATAATGATCATCATCGTCATGATATGATGATTGATGATGATCGATTCCGTCATGTTCCTCCTGGTCTTCACTTCCCGGCGATTTTTTCTGACAATAATGATCCGACGGCTATATATGATGGTGGCGGCGGCGGATACGGAGGTGGAAGTTACTCGATGAATCATTGTTTCGCATCTGGATCAAAGCAGGAGCAGTTGTTTCCACCGGTGATGATGATGACTAGTCTAAATCAAGATTCCGGTATTGGATCGTCGTCGTCACCTAGCAAGAGATTTAACGGCGGCGGCGTTGGAGATTGTTCGACTTCTATGGCGGCGACGCCGTTAATGCAGAACCAAGGTGGGATTTACCAATTGCCTGGTTTGAATTGGTATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009908 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045995 GO:0048229 GO:0048316 GO:0048317 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048481 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

320

Amino Acids

35.44

Weight (kDa)

8.52

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	18 - 146	1.1e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52880 AT3G15510
fragaria_vesca	FvH4_3g20700
malus_domestica	MD03G1222600.v1.1 MD11G1239900.v1.1
prunus_persica	Prupe.4G187100_v2.0.a1 Prupe.4G187100_v2.0.a1
pyrus_communis	pycom03g17130 pycom11g21170
rosa_chinensis	RchiOBHm_Chr5g0034821
rosa_laevigata	RLG00000033580
rosa_multiflora	Rmu_sc0002460.1_g000042
rosa_roxburghii	Rroxscaffold_1G00045490
rosa_rugosa	Rorug05G0148600
rosa_samantha	Rh5AG241000 Rh5BG241100 Rh5CG272100 Rh5DG249600
rosa_wichuraiana	Rw5G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	140, 191
AclWI	GGATC	4 cut(s)	167, 677, 769, 838
AcsI	RAATTY	1 cut(s)	167
AcyI	GRCGYC	1 cut(s)	902
AfaI	GTAC	3 cut(s)	10, 307, 541
AfiI	CCNNNNNNNGG	2 cut(s)	291, 398
AgeI	ACCGGT	2 cut(s)	316, 787
AgsI	TTSAA	2 cut(s)	327, 949
AhlI	ACTAGT	1 cut(s)	803
AjnI	CCWGG	3 cut(s)	55, 643, 940
AluBI	AGCT	3 cut(s)	197, 260, 275
AluI	AGCT	3 cut(s)	197, 260, 275
AlwI	GGATC	4 cut(s)	167, 677, 769, 838
AlwNI	CAGNNNCTG	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	167
AsiGI	ACCGGT	2 cut(s)	316, 787
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	659
AsuHPI	GGTGA	3 cut(s)	331, 802, 834
AvaII	GGWCC	1 cut(s)	26
BaeI	ACNNNNGTAYC	2 cut(s)	709, 742
BarI	GAAGNNNNNNTAC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	641
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	695
BceAI	ACGGC	3 cut(s)	705, 877, 889
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BciT130I	CCWGG	3 cut(s)	57, 645, 942
BciVI	GTATCC	1 cut(s)	710
BclI	TGATCA	1 cut(s)	589
BcnI	CCSGG	1 cut(s)	659
BcuI	ACTAGT	1 cut(s)	803
BfaI	CTAG	6 cut(s)	261, 371, 549, 581, 804, 846
BfuI	GTATCC	1 cut(s)	710
BisI	GCNGC	8 cut(s)	35, 38, 276, 709, 712, 865, 868, 897
BlsI	GCNGC	8 cut(s)	36, 39, 277, 710, 713, 866, 869, 898
Bme1390I	CCNGG	4 cut(s)	57, 645, 659, 942
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmrFI	CCNGG	4 cut(s)	57, 645, 659, 942
BmsI	GCATC	2 cut(s)	554, 764
BpiI	GAAGAC	1 cut(s)	641
BpmI	CTGGAG	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	659
Bsa29I	ATCGAT	1 cut(s)	625
BsaBI	GATNNNNATC	3 cut(s)	588, 594, 621
BsaHI	GRCGYC	1 cut(s)	902
BsaJI	CCNNGG	2 cut(s)	176, 919
BsaWI	WCCGGW	6 cut(s)	20, 63, 284, 316, 787, 821
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 764, 794
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 398
Bse118I	RCCGGY	3 cut(s)	316, 329, 787
Bse1I	ACTGG	2 cut(s)	134, 307
Bse8I	GATNNNNATC	3 cut(s)	588, 594, 621
BseBI	CCWGG	3 cut(s)	57, 645, 942
BseCI	ATCGAT	1 cut(s)	625
BseDI	CCNNGG	2 cut(s)	176, 919
BseGI	GGATG	1 cut(s)	70
BseJI	GATNNNNATC	3 cut(s)	588, 594, 621
BseLI	CCNNNNNNNGG	2 cut(s)	291, 398
BseMII	CTCAG	1 cut(s)	505
BseNI	ACTGG	2 cut(s)	134, 307
BseXI	GCAGC	1 cut(s)	262
Bsh1236I	CGCG	2 cut(s)	140, 191
BshTI	ACCGGT	2 cut(s)	316, 787
BshVI	ATCGAT	1 cut(s)	625
BsiSI	CCGG	8 cut(s)	21, 64, 285, 317, 330, 659, 788, 822
BslI	CCNNNNNNNGG	2 cut(s)	291, 398
Bsp143I	GATC	9 cut(s)	141, 157, 172, 238, 589, 622, 682, 761, 830
Bsp19I	CCATGG	1 cut(s)	176
Bsp68I	TCGCGA	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	504
BspDI	ATCGAT	1 cut(s)	625
BspFNI	CGCG	2 cut(s)	140, 191
BspHI	TCATGA	1 cut(s)	601
BspPI	GGATC	4 cut(s)	167, 677, 769, 838
BsrFI	RCCGGY	3 cut(s)	316, 329, 787
BsrI	ACTGG	2 cut(s)	134, 307
BssAI	RCCGGY	3 cut(s)	316, 329, 787
BssECI	CCNNGG	2 cut(s)	176, 919
BssMI	GATC	9 cut(s)	141, 157, 172, 238, 589, 622, 682, 761, 830
BssNI	GRCGYC	1 cut(s)	902
BssT1I	CCWWGG	2 cut(s)	176, 919
Bst2UI	CCWGG	3 cut(s)	57, 645, 942
Bst4CI	ACNGT	1 cut(s)	383
BstACI	GRCGYC	1 cut(s)	902
BstDEI	CTNAG	1 cut(s)	491
BstDSI	CCRYGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	2 cut(s)	140, 191
BstKTI	GATC	9 cut(s)	144, 160, 175, 241, 592, 625, 685, 764, 833
BstMBI	GATC	9 cut(s)	141, 157, 172, 238, 589, 622, 682, 761, 830
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 910
BstNI	CCWGG	3 cut(s)	57, 645, 942
BstSCI	CCNGG	4 cut(s)	55, 643, 657, 940
BstUI	CGCG	2 cut(s)	140, 191
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	641
BstXI	CCANNNNNNTGG	1 cut(s)	941
Bsu15I	ATCGAT	1 cut(s)	625
BsuI	GTATCC	1 cut(s)	710
BsuTUI	ATCGAT	1 cut(s)	625
BtgI	CCRYGG	1 cut(s)	176
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	388
BtuMI	TCGCGA	1 cut(s)	140
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	601
Cfr10I	RCCGGY	3 cut(s)	316, 329, 787
Cfr13I	GGNCC	1 cut(s)	26
ClaI	ATCGAT	1 cut(s)	625
CseI	GACGC	1 cut(s)	910
Csp6I	GTAC	3 cut(s)	9, 306, 540
CspAI	ACCGGT	2 cut(s)	316, 787
CviAII	CATG	4 cut(s)	177, 425, 602, 635
CviJI	RGCY	6 cut(s)	197, 260, 275, 368, 496, 692
CviKI_1	RGCY	6 cut(s)	197, 260, 275, 368, 496, 692
CviQI	GTAC	3 cut(s)	9, 306, 540
DdeI	CTNAG	1 cut(s)	491
DpnI	GATC	9 cut(s)	143, 159, 174, 240, 591, 624, 684, 763, 832
DpnII	GATC	9 cut(s)	141, 157, 172, 238, 589, 622, 682, 761, 830
EciI	GGCGGA	2 cut(s)	21, 729
Eco130I	CCWWGG	2 cut(s)	176, 919
Eco47I	GGWCC	1 cut(s)	26
EcoRII	CCWGG	3 cut(s)	55, 643, 940
EcoT14I	CCWWGG	2 cut(s)	176, 919
EcoT22I	ATGCAT	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	176, 919
FaeI	CATG	4 cut(s)	180, 428, 605, 638
FatI	CATG	4 cut(s)	176, 424, 601, 634
FauI	CCCGC	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	8 cut(s)	35, 38, 276, 709, 712, 865, 868, 897
FokI	GGATG	1 cut(s)	57
Fsp4HI	GCNGC	8 cut(s)	35, 38, 276, 709, 712, 865, 868, 897
FspBI	CTAG	6 cut(s)	261, 371, 549, 581, 804, 846
GluI	GCNGC	8 cut(s)	35, 38, 276, 709, 712, 865, 868, 897
GsuI	CTGGAG	1 cut(s)	39
HapII	CCGG	8 cut(s)	21, 64, 285, 317, 330, 659, 788, 822
HgaI	GACGC	1 cut(s)	910
Hin1I	GRCGYC	1 cut(s)	902
Hin1II	CATG	4 cut(s)	180, 428, 605, 638
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	6 cut(s)	14, 60, 119, 627, 742, 818
HpaI	GTTAAC	1 cut(s)	438
HpaII	CCGG	8 cut(s)	21, 64, 285, 317, 330, 659, 788, 822
HphI	GGTGA	3 cut(s)	331, 802, 834
Hpy166II	GTNNAC	2 cut(s)	389, 438
Hpy188I	TCNGA	4 cut(s)	243, 412, 673, 687
Hpy188III	TCNNGA	7 cut(s)	139, 549, 581, 602, 759, 815, 960
Hpy8I	GTNNAC	2 cut(s)	389, 438
Hpy99I	CGWCG	5 cut(s)	155, 691, 838, 841, 904
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	424, 913
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 910
HpyF3I	CTNAG	1 cut(s)	491
HpySE526I	ACGT	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	902
Hsp92II	CATG	4 cut(s)	180, 428, 605, 638
Ksp22I	TGATCA	1 cut(s)	589
KspAI	GTTAAC	1 cut(s)	438
Kzo9I	GATC	9 cut(s)	141, 157, 172, 238, 589, 622, 682, 761, 830
LmnI	GCTCC	2 cut(s)	257, 772
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	2 cut(s)	554, 764
MaeI	CTAG	6 cut(s)	261, 371, 549, 581, 804, 846
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	3 cut(s)	464, 731, 840
MalI	GATC	9 cut(s)	143, 159, 174, 240, 591, 624, 684, 763, 832
MboI	GATC	9 cut(s)	141, 157, 172, 238, 589, 622, 682, 761, 830
MboII	GAAGA	4 cut(s)	9, 95, 557, 641
MfeI	CAATTG	1 cut(s)	935
MluCI	AATT	4 cut(s)	93, 167, 935, 949
MmeI	TCCRAC	3 cut(s)	98, 710, 853
MnlI	CCTC	6 cut(s)	39, 59, 63, 113, 651, 716
Mph1103I	ATGCAT	1 cut(s)	426
MseI	TTAA	5 cut(s)	360, 405, 437, 858, 908
MslI	CAYNNNNRTG	2 cut(s)	462, 600
MspI	CCGG	8 cut(s)	21, 64, 285, 317, 330, 659, 788, 822
MspR9I	CCNGG	4 cut(s)	57, 645, 659, 942
MunI	CAATTG	1 cut(s)	935
MvaI	CCWGG	3 cut(s)	57, 645, 942
MvnI	CGCG	2 cut(s)	140, 191
MwoI	GCNNNNNNNGC	2 cut(s)	146, 910
NciI	CCSGG	1 cut(s)	659
NcoI	CCATGG	1 cut(s)	176
NdeII	GATC	9 cut(s)	141, 157, 172, 238, 589, 622, 682, 761, 830
NlaIII	CATG	4 cut(s)	180, 428, 605, 638
NmuCI	GTSAC	2 cut(s)	464, 840
NruI	TCGCGA	1 cut(s)	140
NsiI	ATGCAT	1 cut(s)	426
PagI	TCATGA	1 cut(s)	601
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PfeI	GAWTC	6 cut(s)	14, 60, 119, 627, 742, 818
PfoI	TCCNGGA	1 cut(s)	55
PinAI	ACCGGT	2 cut(s)	316, 787
PkrI	GCNGC	8 cut(s)	36, 39, 277, 710, 713, 866, 869, 898
Psp6I	CCWGG	3 cut(s)	55, 643, 940
PspGI	CCWGG	3 cut(s)	55, 643, 940
PspPI	GGNCC	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	122
RruI	TCGCGA	1 cut(s)	140
RsaI	GTAC	3 cut(s)	10, 307, 541
RsaNI	GTAC	3 cut(s)	9, 306, 540
RseI	CAYNNNNRTG	2 cut(s)	462, 600
SaqAI	TTAA	5 cut(s)	360, 405, 437, 858, 908
SatI	GCNGC	8 cut(s)	35, 38, 276, 709, 712, 865, 868, 897
Sau3AI	GATC	9 cut(s)	141, 157, 172, 238, 589, 622, 682, 761, 830
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	4 cut(s)	57, 645, 659, 942
SfaNI	GCATC	2 cut(s)	554, 764
SgrAI	CRCCGGYG	1 cut(s)	787
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	2 cut(s)	462, 600
SpeI	ACTAGT	1 cut(s)	803
Sse9I	AATT	4 cut(s)	93, 167, 935, 949
SspMI	CTAG	6 cut(s)	261, 371, 549, 581, 804, 846
StyD4I	CCNGG	4 cut(s)	55, 643, 657, 940
StyI	CCWWGG	2 cut(s)	176, 919
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	3 cut(s)	625, 737, 884
TasI	AATT	4 cut(s)	93, 167, 935, 949
TatI	WGTACW	2 cut(s)	8, 539
TauI	GCSGC	7 cut(s)	37, 40, 711, 714, 867, 870, 899
TfiI	GAWTC	6 cut(s)	14, 60, 119, 627, 742, 818
Tru1I	TTAA	5 cut(s)	360, 405, 437, 858, 908
Tru9I	TTAA	5 cut(s)	360, 405, 437, 858, 908
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	2 cut(s)	464, 840
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	2 cut(s)	464, 840
TspDTI	ATGAA	6 cut(s)	59, 86, 441, 557, 566, 755
TspGWI	ACGGA	3 cut(s)	270, 620, 735
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	1 cut(s)	167
XbaI	TCTAGA	2 cut(s)	548, 580
XspI	CTAG	6 cut(s)	261, 371, 549, 581, 804, 846
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.