Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011796

Physical Location & Seq

Genomic Coordinates Reverse (-)

64473403 .. 64475157

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00045490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCATGAGTATAGGCTTGCTGATAACAACACAAGTAACAAGCCACCTGGGTGTCATGACTTGGGTAACAAGAAGAACTCCTTGAGGCTTGATGATTGGGTGCTTTGTCGAATTTACAAGAAGAACAACACGCATAGGCCGATGGATCAGGAGGACCCCATGGAAAACATGATGGGATCGTCGTTCCAACTGTCGAAGCTGCACCACCTTCCCCCGAAATCTACCACATCAACCTACTCCCAATTCGACAACGACCACAATTTATTCGACTGGATGGTAAGCCACGAAGGGATTAATAGTAGTACAGCTTCTTTTCTTCCAAACGCGGCTTTGGCCAACAGCTCTCTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045995 GO:0048229 GO:0048316 GO:0048317 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048481 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

117

Amino Acids

13.35

Weight (kDa)

6.35

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52880 AT3G15510
fragaria_vesca	FvH4_3g20700
malus_domestica	MD03G1222600.v1.1 MD11G1239900.v1.1
prunus_persica	Prupe.4G187100_v2.0.a1 Prupe.4G187100_v2.0.a1
pyrus_communis	pycom03g17130 pycom11g21170
rosa_chinensis	RchiOBHm_Chr5g0034821
rosa_laevigata	RLG00000033580
rosa_multiflora	Rmu_sc0002460.1_g000042
rosa_roxburghii	Rroxscaffold_1G00045490
rosa_rugosa	Rorug05G0148600
rosa_samantha	Rh5AG241000 Rh5BG241100 Rh5CG272100 Rh5DG249600
rosa_wichuraiana	Rw5G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	326
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	2 cut(s)	153, 184
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	111
AfaI	GTAC	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	46
AleI	CACNNNNGTG	1 cut(s)	49
AluBI	AGCT	3 cut(s)	199, 308, 342
AluI	AGCT	3 cut(s)	199, 308, 342
AlwI	GGATC	2 cut(s)	153, 184
AoxI	GGCC	2 cut(s)	137, 333
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	111
AseI	ATTAAT	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	335
BarI	GAAGNNNNNNTAC	2 cut(s)	292, 324
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	3 cut(s)	136, 166, 268
BciT130I	CCWGG	1 cut(s)	48
BisI	GCNGC	2 cut(s)	200, 327
BlsI	GCNGC	2 cut(s)	201, 328
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	47, 159
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	47, 159
BseGI	GGATG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	2 cut(s)	139, 335
BsnI	GGCC	2 cut(s)	139, 335
Bsp143I	GATC	2 cut(s)	145, 176
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	2 cut(s)	139, 335
BspFNI	CGCG	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	153, 184
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	47, 159
BssMI	GATC	2 cut(s)	145, 176
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	2 cut(s)	148, 179
BstMBI	GATC	2 cut(s)	145, 176
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	139, 335
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	18
CciI	TCATGA	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	4 cut(s)	5, 56, 160, 169
CviQI	GTAC	1 cut(s)	303
DpnI	GATC	2 cut(s)	147, 178
DpnII	GATC	2 cut(s)	145, 176
EaeI	YGGCCR	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	4 cut(s)	8, 59, 163, 172
FaiI	YATR	6 cut(s)	6, 12, 57, 135, 161, 170
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	4 cut(s)	4, 55, 159, 168
Fnu4HI	GCNGC	2 cut(s)	200, 327
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	200, 327
GluI	GCNGC	2 cut(s)	200, 327
HaeIII	GGCC	2 cut(s)	139, 335
Hin1II	CATG	4 cut(s)	8, 59, 163, 172
Hpy188III	TCNNGA	2 cut(s)	56, 149
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	218, 281
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	4, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
Hsp92II	CATG	4 cut(s)	8, 59, 163, 172
Kzo9I	GATC	2 cut(s)	145, 176
LpnPI	CCDG	4 cut(s)	33, 60, 134, 256
Lsp1109I	GCAGC	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	35, 65
MalI	GATC	2 cut(s)	147, 178
MboI	GATC	2 cut(s)	145, 176
MboII	GAAGA	3 cut(s)	85, 133, 308
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	3 cut(s)	111, 242, 259
MluNI	TGGCCA	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	2 cut(s)	78, 145
Mox20I	TGGCCA	1 cut(s)	335
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	49
Msp20I	TGGCCA	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	145, 176
NlaIII	CATG	4 cut(s)	8, 59, 163, 172
NlaIV	GGNNCC	1 cut(s)	156
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	49
PagI	TCATGA	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	201, 328
PpuMI	RGGWCCY	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	200, 327
Sau3AI	GATC	2 cut(s)	145, 176
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	6 cut(s)	49, 201, 210, 236, 310, 344
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	3 cut(s)	111, 242, 259
SsiI	CCGC	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	4 cut(s)	109, 194, 246, 267
TasI	AATT	3 cut(s)	111, 242, 259
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	154
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.