Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0011796

Physical Location & Seq

Genomic Coordinates Forward (+)

29352893 .. 29355301

Gene Structure 2409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG272100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGATGTATGATTTGACAGAAAAGGCGACGTTCGGAGAGCAAGAGTGGTATTTTTTCAGTCCTAGAGACCGGAAGTACCCAAACGGAGCACGGCCTAATAGAGCAGCGACTTCAGGGTATTGGAAGGCGACGGGAACTGATAAGCCGGTTTTGAGTACTACTGATGAGGGAGGTGGGGGTACTCGGAAAGTTGGGGTGAAAAAAGCACTTGTTTTCTACAGAGGAAAGCCCCCAAAAGGAATCAAAACCAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAACACAAGTAACAAGCCACCTGGGTGTCATGGCTTGGGTAACAAGAAGAACTCCTTGAGGCTTGATGATTGGGTGCTTTGTCGAATTTACAAGAAGAACAACACGCATAGGCCGATGGATCAGGAGGACCCCATGGAAGACATGATGGGATCGTCGTTCCAACTGTCGAAGCTGCACCACCTTCCCCCGAAATCTACCACATCAACCTACTCCCAATTCATGGACAACGACCACAATTTATTCGACTGGATGGTAAGCCACGAAGGGATTAATAGTAGTACAGCTTCTTTTCTTCCAAACGCGGCTTTGGCCAATAGCTCTCTCCCTCTAAAACGGGGACTCCCGAGTCTGTACTGGAATGATCAGGAGGACGAAGCTGGGCCTTCAAGGAGACTACAGCTGGATAACAGTGATAGCACTGGAAATGGTTCTATTGCCACTCTGCTTTCTCAGCTCCCTCAGACAGCTCCTCCATTGCACCAGCAGCCAATGCTGGGGTCACAGCTCGGTGGCGACGGTCTGTTTCGTGATACACAATATCAACTTCCGGGGATGAATTGGTATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045995 GO:0048229 GO:0048316 GO:0048317 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048481 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

284

Amino Acids

31.88

Weight (kDa)

8.69

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	4 - 92	1.2e-27	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52880 AT3G15510
fragaria_vesca	FvH4_3g20700
malus_domestica	MD03G1222600.v1.1 MD11G1239900.v1.1
prunus_persica	Prupe.4G187100_v2.0.a1 Prupe.4G187100_v2.0.a1
pyrus_communis	pycom03g17130 pycom11g21170
rosa_chinensis	RchiOBHm_Chr5g0034821
rosa_laevigata	RLG00000033580
rosa_multiflora	Rmu_sc0002460.1_g000042
rosa_roxburghii	Rroxscaffold_1G00045490
rosa_rugosa	Rorug05G0148600
rosa_samantha	Rh5AG241000 Rh5BG241100 Rh5CG272100 Rh5DG249600
rosa_wichuraiana	Rw5G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	630
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccII	CGCG	1 cut(s)	587
AciI	CCGC	1 cut(s)	587
AclWI	GGATC	3 cut(s)	263, 411, 442
AcoI	YGGCCR	1 cut(s)	594
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	5 cut(s)	77, 157, 181, 565, 638
AfiI	CCNNNNNNNGG	3 cut(s)	236, 505, 779
AgsI	TTSAA	1 cut(s)	672
AjnI	CCWGG	1 cut(s)	304
AleI	CACNNNNGTG	1 cut(s)	307
AluBI	AGCT	8 cut(s)	457, 569, 603, 662, 685, 739, 752, 790
AluI	AGCT	8 cut(s)	457, 569, 603, 662, 685, 739, 752, 790
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	60, 670
AlwI	GGATC	3 cut(s)	263, 411, 442
Ama87I	CYCGRG	1 cut(s)	628
AoxI	GGCC	4 cut(s)	92, 395, 594, 665
ApeKI	GCWGC	3 cut(s)	104, 457, 769
ApoI	RAATTY	1 cut(s)	369
AseI	ATTAAT	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	712
AspS9I	GGNCC	2 cut(s)	412, 665
AsuC2I	CCSGG	1 cut(s)	834
AsuHPI	GGTGA	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	412
BalI	TGGCCA	1 cut(s)	596
BarI	GAAGNNNNNNTAC	2 cut(s)	553, 585
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	3 cut(s)	116, 444, 781
BccI	CCATC	3 cut(s)	394, 424, 529
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	306
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	834
BcoDI	GTCTC	2 cut(s)	60, 670
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	2 cut(s)	217, 680
BisI	GCNGC	4 cut(s)	105, 458, 588, 770
BlsI	GCNGC	4 cut(s)	106, 459, 589, 771
BmcAI	AGTACT	1 cut(s)	157
Bme1390I	CCNGG	2 cut(s)	306, 834
Bme18I	GGWCC	1 cut(s)	412
BmeT110I	CYCGRG	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	412, 665
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	2 cut(s)	306, 834
BpiI	GAAGAC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	361
BpuMI	CCSGG	1 cut(s)	834
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	305, 417, 833
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	4 cut(s)	609, 639, 739, 769
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 505, 779
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	3 cut(s)	536, 644, 709
Bse3DI	GCAATG	1 cut(s)	758
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	305, 417, 833
BseGI	GGATG	2 cut(s)	540, 843
BseLI	CCNNNNNNNGG	3 cut(s)	236, 505, 779
BseMI	GCAATG	1 cut(s)	758
BseMII	CTCAG	2 cut(s)	749, 758
BseNI	ACTGG	3 cut(s)	536, 644, 709
BseRI	GAGGAG	1 cut(s)	744
BseXI	GCAGC	3 cut(s)	116, 444, 781
BseYI	CCCAGC	2 cut(s)	662, 778
BsgI	GTGCAG	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	4 cut(s)	94, 397, 596, 667
BsiHKAI	GWGCWC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	628
BsiSI	CCGG	3 cut(s)	70, 146, 833
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	3 cut(s)	236, 505, 779
BsmAI	GTCTC	2 cut(s)	60, 670
BsmFI	GGGAC	1 cut(s)	636
BsnI	GGCC	4 cut(s)	94, 397, 596, 667
Bso31I	GGTCTC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	4 cut(s)	255, 403, 434, 646
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	1 cut(s)	587
BspANI	GGCC	4 cut(s)	94, 397, 596, 667
BspCNI	CTCAG	2 cut(s)	748, 757
BspFNI	CGCG	1 cut(s)	587
BspLI	GGNNCC	1 cut(s)	414
BspPI	GGATC	3 cut(s)	263, 411, 442
BspTNI	GGTCTC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	758
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	3 cut(s)	536, 644, 709
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	3 cut(s)	305, 417, 833
BssMI	GATC	4 cut(s)	255, 403, 434, 646
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	3 cut(s)	450, 695, 803
BstAPI	GCANNNNNTGC	1 cut(s)	775
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	735, 744, 852
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	540, 843
BstFNI	CGCG	1 cut(s)	587
BstKTI	GATC	4 cut(s)	258, 406, 437, 649
BstMAI	GTCTC	2 cut(s)	60, 670
BstMBI	GATC	4 cut(s)	255, 403, 434, 646
BstMWI	GCNNNNNNNGC	4 cut(s)	593, 736, 769, 775
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	304, 832
BstSFI	CTRYAG	2 cut(s)	217, 680
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	3 cut(s)	116, 444, 781
BstV2I	GAAGAC	1 cut(s)	429
BsuRI	GGCC	4 cut(s)	94, 397, 596, 667
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	540, 843
BtsIMutI	CAGTG	2 cut(s)	700, 702
Cac8I	GCNNGC	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	412, 665
Csp6I	GTAC	5 cut(s)	76, 156, 180, 564, 637
CviAII	CATG	6 cut(s)	259, 263, 314, 418, 427, 505
CviQI	GTAC	5 cut(s)	76, 156, 180, 564, 637
DdeI	CTNAG	3 cut(s)	735, 744, 852
DpnI	GATC	4 cut(s)	257, 405, 436, 648
DpnII	GATC	4 cut(s)	255, 403, 434, 646
DrdI	GACNNNNNNGTC	1 cut(s)	630
DseDI	GACNNNNNNGTC	1 cut(s)	630
EaeI	YGGCCR	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	628
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	6 cut(s)	262, 266, 317, 421, 430, 508
FaiI	YATR	9 cut(s)	9, 260, 264, 270, 315, 393, 419, 428, 506
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	6 cut(s)	258, 262, 313, 417, 426, 504
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	4 cut(s)	105, 458, 588, 770
FokI	GGATG	2 cut(s)	547, 850
Fsp4HI	GCNGC	4 cut(s)	105, 458, 588, 770
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	4 cut(s)	105, 458, 588, 770
GsaI	CCCAGC	2 cut(s)	666, 782
HaeIII	GGCC	4 cut(s)	94, 397, 596, 667
HapII	CCGG	3 cut(s)	70, 146, 833
Hin1II	CATG	6 cut(s)	262, 266, 317, 421, 430, 508
HinfI	GANTC	3 cut(s)	240, 624, 631
HpaII	CCGG	3 cut(s)	70, 146, 833
HphI	GGTGA	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	35, 186, 747
Hpy188III	TCNNGA	4 cut(s)	407, 628, 650, 812
Hpy99I	CGWCG	4 cut(s)	31, 133, 442, 803
HpyAV	CCTTC	4 cut(s)	118, 476, 542, 678
HpyCH4III	ACNGT	3 cut(s)	450, 695, 803
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	3 cut(s)	262, 460, 763
HpyF10VI	GCNNNNNNNGC	4 cut(s)	593, 736, 769, 775
HpyF3I	CTNAG	3 cut(s)	735, 744, 852
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	6 cut(s)	262, 266, 317, 421, 430, 508
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	255, 403, 434, 646
LmnI	GCTCC	3 cut(s)	86, 744, 757
Lsp1109I	GCAGC	3 cut(s)	116, 444, 781
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	3 cut(s)	293, 323, 783
MalI	GATC	4 cut(s)	257, 405, 436, 648
MboI	GATC	4 cut(s)	255, 403, 434, 646
MboII	GAAGA	4 cut(s)	343, 391, 434, 569
MfeI	CAATTG	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	596
MluCI	AATT	5 cut(s)	250, 369, 500, 520, 841
MluNI	TGGCCA	1 cut(s)	596
MlyI	GAGTC	2 cut(s)	618, 640
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	9 cut(s)	160, 164, 215, 336, 403, 621, 646, 753, 765
Mox20I	TGGCCA	1 cut(s)	596
Mph1103I	ATGCAT	1 cut(s)	264
MroXI	GAANNNNTTC	1 cut(s)	712
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	307
Msp20I	TGGCCA	1 cut(s)	596
MspA1I	CMGCKG	1 cut(s)	685
MspI	CCGG	3 cut(s)	70, 146, 833
MspR9I	CCNGG	2 cut(s)	306, 834
MunI	CAATTG	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	4 cut(s)	593, 736, 769, 775
NciI	CCSGG	1 cut(s)	834
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	4 cut(s)	255, 403, 434, 646
NlaIII	CATG	6 cut(s)	262, 266, 317, 421, 430, 508
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	783
NsiI	ATGCAT	1 cut(s)	264
OliI	CACNNNNGTG	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	712
PfeI	GAWTC	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	4 cut(s)	106, 459, 589, 771
PleI	GAGTC	2 cut(s)	618, 639
PpsI	GAGTC	2 cut(s)	618, 639
PpuMI	RGGWCCY	1 cut(s)	412
PshBI	ATTAAT	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	304
PspFI	CCCAGC	2 cut(s)	662, 778
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	2 cut(s)	412, 665
PspPPI	RGGWCCY	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	685
RsaI	GTAC	5 cut(s)	77, 157, 181, 565, 638
RsaNI	GTAC	5 cut(s)	76, 156, 180, 564, 637
RseI	CAYNNNNRTG	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	4 cut(s)	105, 458, 588, 770
Sau3AI	GATC	4 cut(s)	255, 403, 434, 646
Sau96I	GGNCC	2 cut(s)	412, 665
ScaI	AGTACT	1 cut(s)	157
SchI	GAGTC	2 cut(s)	618, 640
ScrFI	CCNGG	2 cut(s)	306, 834
SduI	GDGCHC	1 cut(s)	91
SfcI	CTRYAG	2 cut(s)	217, 680
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	5 cut(s)	250, 369, 500, 520, 841
SsiI	CCGC	1 cut(s)	587
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	304, 832
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	3 cut(s)	450, 695, 803
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	3 cut(s)	367, 452, 528
TasI	AATT	5 cut(s)	250, 369, 500, 520, 841
TatI	WGTACW	3 cut(s)	155, 563, 636
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	2 cut(s)	700, 709
TseFI	GTSAC	1 cut(s)	783
TseI	GCWGC	3 cut(s)	104, 457, 769
Tsp45I	GTSAC	1 cut(s)	783
TspDTI	ATGAA	2 cut(s)	493, 854
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	2 cut(s)	700, 709
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	412
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	712
XspI	CTAG	1 cut(s)	63
ZrmI	AGTACT	1 cut(s)	157
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.