RLG00000033580
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
29212646 .. 29214104
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033580

Sequence Viewer

Length: 1173 bp
ATGCGAATAATCTCCCTGGCTGCCGTACTCAATAAGAAGGGCGCTGCCTTCATACGAATATCCATATTTTCGTTTTCCGAGCTCTCTATATTTTTGGGGTGTGGGTGGTGTGGAATATGTTCTTGGCTTCAAAACCCTCTACAGATGGAGAGCACCGATTCGTCGTCCGGCTCGCAGCAGCCGCCACAGCCAAGCCTGCCGCCGGGGTTCCGCTTCCACCCCACCGATGAGGAGCTAGTCGTTCATTACCTCAAGAAAAAGGCCTCCTCGGCGCCCCTCCCCGTTGCCATCATCGCCGAGGTCGACCTCTACAAATTCGATCCATGGCAGCTCCCTGAAAAGGCGACGTTCGGAGAGCAAGAGTGGTATTTTTTCAGTCCTAGAGACCGGAAGTACCCGAACGGAGCACGGCCTAATAGAGCAGCGACTTCAGGGTATTGGAAGGCGACGGGAACTGATAAGCCGGTTTTGAGTACTACTGATGAGGGAGGTTGGGGTACTCGGAAAGTTGGGGTGAAAAAAGCACTTGTTTTCTACAGAGGAAAGCCCCCAAAAGGAATCAAAACCAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAACACAAGTAACAAGCCACCTGGGTGTCATGACTTGGGTAACAAGAAGAACTCCTTGAGGCTTGATGATTGGGTGCTTTGTCGAATTTACAAGAAGAACAACACGCATAGGCCGATGGATCAGGAGGACCCCATGGAAGACATGATGGGATCGTCGTTCCAACTGTCTAAGCTGCACCACCTTCCCCCGAAATCTACCACATCAACCTACTCCCAATTCATGGACAACGACCACAATTTATTCGACTGGATGGTAAGCCACGAAGGGATTAATAGTAGTACAGCTTCTTTTCTTCCAAACGCGGCTTTGGCCAACAGCTCTCTCCCTCTAAAACGGGGACTCCAGAGTCTGTACTGGAATGATCAGGAGGACGAAGCTGGGCCTTCAAGGAGACTACAGCTGGATAACAGTGATAGCACTGGAAATGGTTCTATTGCCACTCTGCTTTCTCAGCTCCCTCAGACACCTCCTCCATTGCACCAGCAGCCAATGCTGGGGTCGCAGCTCGGTGGCGACGGTCTGTTTCGTGATACACAATATCAACTTCCTGGGATGAATTGGTATTCTTAG

Protein Analysis

391

Amino Acids

43.74

Weight (kDa)

8.45

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 67 - 198 2.7e-51 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011796)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 948
AccB1I GGYRCC 1 cut(s) 271
AccB7I CCANNNNNTGG 1 cut(s) 823
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 905
AciI CCGC 4 cut(s) 182, 200, 211, 905
AclWI GGATC 4 cut(s) 314, 581, 729, 760
AcoI YGGCCR 1 cut(s) 912
AcsI RAATTY 2 cut(s) 314, 687
AcuI CTGAAG 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 272
AfaI GTAC 6 cut(s) 27, 395, 475, 499, 883, 956
AfiI CCNNNNNNNGG 5 cut(s) 202, 340, 554, 823, 1097
AgsI TTSAA 2 cut(s) 131, 990
AjnI CCWGG 3 cut(s) 15, 622, 1150
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AleI CACNNNNGTG 1 cut(s) 625
Alw21I GWGCWC 3 cut(s) 84, 155, 409
Alw26I GTCTC 2 cut(s) 378, 988
AlwI GGATC 4 cut(s) 314, 581, 729, 760
AlwNI CAGNNNCTG 1 cut(s) 952
AoxI GGCC 5 cut(s) 261, 410, 713, 912, 983
ApeKI GCWGC 9 cut(s) 20, 44, 175, 178, 328, 422, 775, 1087, 1105
ApoI RAATTY 2 cut(s) 314, 687
AseI ATTAAT 1 cut(s) 873
Asp700I GAANNNNTTC 2 cut(s) 118, 1030
AspLEI GCGC 2 cut(s) 44, 274
AspS9I GGNCC 2 cut(s) 730, 983
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 526
AvaII GGWCC 1 cut(s) 730
BalI TGGCCA 1 cut(s) 914
BanI GGYRCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 871, 903
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 3 cut(s) 84, 155, 409
BbvI GCAGC 9 cut(s) 7, 31, 187, 190, 340, 434, 762, 1099, 1117
BccI CCATC 5 cut(s) 139, 296, 712, 742, 847
BceAI ACGGC 2 cut(s) 8, 425
BciT130I CCWGG 3 cut(s) 17, 624, 1152
BclI TGATCA 1 cut(s) 964
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 378, 988
BfaI CTAG 2 cut(s) 236, 381
BfmI CTRYAG 3 cut(s) 140, 535, 998
BfoI RGCGCY 2 cut(s) 45, 275
BglI GCCNNNNNGGC 1 cut(s) 269
BmcAI AGTACT 1 cut(s) 475
Bme1390I CCNGG 4 cut(s) 17, 204, 624, 1152
Bme18I GGWCC 1 cut(s) 730
BmgT120I GGNCC 2 cut(s) 730, 983
BmiI GGNNCC 3 cut(s) 209, 273, 732
BmrFI CCNGG 4 cut(s) 17, 204, 624, 1152
BpiI GAAGAC 1 cut(s) 747
BpmI CTGGAG 1 cut(s) 929
BpuEI CTTGAG 2 cut(s) 236, 679
BpuMI CCSGG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 378
BsaJI CCNNGG 8 cut(s) 15, 203, 267, 297, 323, 623, 735, 1151
BsaWI WCCGGW 1 cut(s) 387
BsaXI ACNNNNNCTCC 4 cut(s) 927, 957, 1057, 1087
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 340, 554, 823, 1097
Bse118I RCCGGY 1 cut(s) 463
Bse1I ACTGG 3 cut(s) 854, 962, 1027
Bse3DI GCAATG 1 cut(s) 1076
BseBI CCWGG 3 cut(s) 17, 624, 1152
BseDI CCNNGG 8 cut(s) 15, 203, 267, 297, 323, 623, 735, 1151
BseGI GGATG 2 cut(s) 858, 1161
BseLI CCNNNNNNNGG 5 cut(s) 202, 340, 554, 823, 1097
BseMI GCAATG 1 cut(s) 1076
BseMII CTCAG 2 cut(s) 1067, 1076
BseNI ACTGG 3 cut(s) 854, 962, 1027
BseRI GAGGAG 3 cut(s) 245, 256, 1062
BseXI GCAGC 9 cut(s) 7, 31, 187, 190, 340, 434, 762, 1099, 1117
BseYI CCCAGC 2 cut(s) 980, 1096
BsgI GTGCAG 1 cut(s) 761
Bsh1236I CGCG 1 cut(s) 905
BshFI GGCC 5 cut(s) 263, 412, 715, 914, 985
BshNI GGYRCC 1 cut(s) 271
BsiHKAI GWGCWC 3 cut(s) 84, 155, 409
BsiSI CCGG 4 cut(s) 168, 203, 388, 464
BslFI GGGAC 1 cut(s) 954
BslI CCNNNNNNNGG 5 cut(s) 202, 340, 554, 823, 1097
BsmAI GTCTC 2 cut(s) 378, 988
BsmFI GGGAC 1 cut(s) 954
BsnI GGCC 5 cut(s) 263, 412, 715, 914, 985
Bso31I GGTCTC 1 cut(s) 378
Bsp1286I GDGCHC 3 cut(s) 84, 155, 409
Bsp143I GATC 5 cut(s) 319, 573, 721, 752, 964
Bsp19I CCATGG 2 cut(s) 323, 735
BspACI CCGC 4 cut(s) 182, 200, 211, 905
BspANI GGCC 5 cut(s) 263, 412, 715, 914, 985
BspCNI CTCAG 2 cut(s) 1066, 1075
BspFNI CGCG 1 cut(s) 905
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 3 cut(s) 209, 273, 732
BspPI GGATC 4 cut(s) 314, 581, 729, 760
BspT107I GGYRCC 1 cut(s) 271
BspTNI GGTCTC 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 1076
BsrFI RCCGGY 1 cut(s) 463
BsrI ACTGG 3 cut(s) 854, 962, 1027
BssAI RCCGGY 1 cut(s) 463
BssECI CCNNGG 8 cut(s) 15, 203, 267, 297, 323, 623, 735, 1151
BssMI GATC 5 cut(s) 319, 573, 721, 752, 964
BssNI GRCGYC 1 cut(s) 272
BssT1I CCWWGG 2 cut(s) 323, 735
Bst2UI CCWGG 3 cut(s) 17, 624, 1152
Bst4CI ACNGT 3 cut(s) 768, 1013, 1121
BstACI GRCGYC 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 1093
BstC8I GCNNGC 3 cut(s) 173, 197, 594
BstDEI CTNAG 4 cut(s) 771, 1053, 1062, 1170
BstDSI CCRYGG 2 cut(s) 323, 735
BstF5I GGATG 2 cut(s) 858, 1161
BstFNI CGCG 1 cut(s) 905
BstH2I RGCGCY 2 cut(s) 45, 275
BstHHI GCGC 2 cut(s) 44, 274
BstKTI GATC 5 cut(s) 322, 576, 724, 755, 967
BstMAI GTCTC 2 cut(s) 378, 988
BstMBI GATC 5 cut(s) 319, 573, 721, 752, 964
BstNI CCWGG 3 cut(s) 17, 624, 1152
BstSCI CCNGG 4 cut(s) 15, 202, 622, 1150
BstSFI CTRYAG 3 cut(s) 140, 535, 998
BstUI CGCG 1 cut(s) 905
BstV1I GCAGC 9 cut(s) 7, 31, 187, 190, 340, 434, 762, 1099, 1117
BstV2I GAAGAC 1 cut(s) 747
BsuRI GGCC 5 cut(s) 263, 412, 715, 914, 985
BtgI CCRYGG 2 cut(s) 323, 735
BtgZI GCGATG 1 cut(s) 277
BtsCI GGATG 2 cut(s) 858, 1161
BtsIMutI CAGTG 2 cut(s) 1018, 1020
Cac8I GCNNGC 3 cut(s) 173, 197, 594
CaiI CAGNNNCTG 1 cut(s) 952
CciI TCATGA 1 cut(s) 631
CfoI GCGC 2 cut(s) 44, 274
Cfr10I RCCGGY 1 cut(s) 463
Cfr13I GGNCC 2 cut(s) 730, 983
Csp6I GTAC 6 cut(s) 26, 394, 474, 498, 882, 955
CviAII CATG 7 cut(s) 324, 577, 581, 632, 736, 745, 823
CviQI GTAC 6 cut(s) 26, 394, 474, 498, 882, 955
DdeI CTNAG 4 cut(s) 771, 1053, 1062, 1170
DinI GGCGCC 1 cut(s) 273
DpnI GATC 5 cut(s) 321, 575, 723, 754, 966
DpnII GATC 5 cut(s) 319, 573, 721, 752, 964
DrdI GACNNNNNNGTC 1 cut(s) 948
DseDI GACNNNNNNGTC 1 cut(s) 948
EaeI YGGCCR 1 cut(s) 912
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 323, 735
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 730
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 730
EcoRII CCWGG 3 cut(s) 15, 622, 1150
EcoT14I CCWWGG 2 cut(s) 323, 735
EcoT22I ATGCAT 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 84
EgeI GGCGCC 1 cut(s) 273
EheI GGCGCC 1 cut(s) 273
ErhI CCWWGG 2 cut(s) 323, 735
FaeI CATG 7 cut(s) 327, 580, 584, 635, 739, 748, 826
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FaqI GGGAC 1 cut(s) 954
FatI CATG 7 cut(s) 323, 576, 580, 631, 735, 744, 822
FbaI TGATCA 1 cut(s) 964
FblI GTMKAC 1 cut(s) 303
FokI GGATG 2 cut(s) 865, 1168
FriOI GRGCYC 1 cut(s) 84
FspBI CTAG 2 cut(s) 236, 381
GlaI GCGC 2 cut(s) 43, 273
GsaI CCCAGC 2 cut(s) 984, 1100
GsuI CTGGAG 1 cut(s) 929
HaeII RGCGCY 2 cut(s) 45, 275
HaeIII GGCC 5 cut(s) 263, 412, 715, 914, 985
HapII CCGG 4 cut(s) 168, 203, 388, 464
HhaI GCGC 2 cut(s) 44, 274
Hin1I GRCGYC 1 cut(s) 272
Hin1II CATG 7 cut(s) 327, 580, 584, 635, 739, 748, 826
Hin6I GCGC 2 cut(s) 42, 272
HinP1I GCGC 2 cut(s) 42, 272
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 4 cut(s) 158, 558, 942, 949
HpaII CCGG 4 cut(s) 168, 203, 388, 464
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 4 cut(s) 79, 353, 504, 1065
Hpy188III TCNNGA 6 cut(s) 253, 632, 725, 946, 968, 1130
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 5 cut(s) 166, 349, 451, 760, 1121
HpyAV CCTTC 6 cut(s) 31, 58, 436, 794, 860, 996
HpyCH4III ACNGT 3 cut(s) 768, 1013, 1121
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 3 cut(s) 580, 778, 1081
HpyF3I CTNAG 4 cut(s) 771, 1053, 1062, 1170
HpySE526I ACGT 1 cut(s) 347
Hsp92I GRCGYC 1 cut(s) 272
Hsp92II CATG 7 cut(s) 327, 580, 584, 635, 739, 748, 826
HspAI GCGC 2 cut(s) 42, 272
KasI GGCGCC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 5 cut(s) 319, 573, 721, 752, 964
LmnI GCTCC 4 cut(s) 232, 336, 404, 1062
Lsp1109I GCAGC 9 cut(s) 7, 31, 187, 190, 340, 434, 762, 1099, 1117
MaeI CTAG 2 cut(s) 236, 381
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 2 cut(s) 611, 641
MalI GATC 5 cut(s) 321, 575, 723, 754, 966
MboI GATC 5 cut(s) 319, 573, 721, 752, 964
MboII GAAGA 4 cut(s) 661, 709, 752, 887
MfeI CAATTG 1 cut(s) 568
MhlI GDGCHC 3 cut(s) 84, 155, 409
MlsI TGGCCA 1 cut(s) 914
MluCI AATT 6 cut(s) 314, 568, 687, 818, 838, 1159
MluNI TGGCCA 1 cut(s) 914
Mly113I GGCGCC 1 cut(s) 272
MlyI GAGTC 2 cut(s) 936, 958
MmeI TCCRAC 1 cut(s) 787
Mox20I TGGCCA 1 cut(s) 914
Mph1103I ATGCAT 1 cut(s) 582
MroXI GAANNNNTTC 2 cut(s) 118, 1030
MscI TGGCCA 1 cut(s) 914
MseI TTAA 1 cut(s) 873
MslI CAYNNNNRTG 1 cut(s) 625
Msp20I TGGCCA 1 cut(s) 914
MspA1I CMGCKG 1 cut(s) 1003
MspI CCGG 4 cut(s) 168, 203, 388, 464
MspR9I CCNGG 4 cut(s) 17, 204, 624, 1152
MunI CAATTG 1 cut(s) 568
MvaI CCWGG 3 cut(s) 17, 624, 1152
MvnI CGCG 1 cut(s) 905
NarI GGCGCC 1 cut(s) 272
NciI CCSGG 1 cut(s) 204
NcoI CCATGG 2 cut(s) 323, 735
NdeII GATC 5 cut(s) 319, 573, 721, 752, 964
NlaIII CATG 7 cut(s) 327, 580, 584, 635, 739, 748, 826
NlaIV GGNNCC 3 cut(s) 209, 273, 732
NmeAIII GCCGAG 2 cut(s) 248, 322
NsiI ATGCAT 1 cut(s) 582
OliI CACNNNNGTG 1 cut(s) 625
PagI TCATGA 1 cut(s) 631
PceI AGGCCT 1 cut(s) 263
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 713
PdmI GAANNNNTTC 2 cut(s) 118, 1030
PfeI GAWTC 2 cut(s) 158, 558
PflMI CCANNNNNTGG 1 cut(s) 823
PleI GAGTC 2 cut(s) 936, 957
PluTI GGCGCC 1 cut(s) 275
PpsI GAGTC 2 cut(s) 936, 957
PpuMI RGGWCCY 1 cut(s) 730
PshBI ATTAAT 1 cut(s) 873
Psp124BI GAGCTC 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 730
Psp6I CCWGG 3 cut(s) 15, 622, 1150
PspFI CCCAGC 2 cut(s) 980, 1096
PspGI CCWGG 3 cut(s) 15, 622, 1150
PspN4I GGNNCC 3 cut(s) 209, 273, 732
PspPI GGNCC 2 cut(s) 730, 983
PspPPI RGGWCCY 1 cut(s) 730
PstNI CAGNNNCTG 1 cut(s) 952
PvuII CAGCTG 1 cut(s) 1003
RsaI GTAC 6 cut(s) 27, 395, 475, 499, 883, 956
RsaNI GTAC 6 cut(s) 26, 394, 474, 498, 882, 955
RseI CAYNNNNRTG 1 cut(s) 625
SacI GAGCTC 1 cut(s) 84
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 873
Sau3AI GATC 5 cut(s) 319, 573, 721, 752, 964
Sau96I GGNCC 2 cut(s) 730, 983
ScaI AGTACT 1 cut(s) 475
SchI GAGTC 2 cut(s) 936, 958
ScrFI CCNGG 4 cut(s) 17, 204, 624, 1152
SduI GDGCHC 3 cut(s) 84, 155, 409
SfcI CTRYAG 3 cut(s) 140, 535, 998
SfoI GGCGCC 1 cut(s) 273
SinI GGWCC 1 cut(s) 730
SmiMI CAYNNNNRTG 1 cut(s) 625
SmlI CTYRAG 2 cut(s) 251, 658
SmoI CTYRAG 2 cut(s) 251, 658
Sse9I AATT 6 cut(s) 314, 568, 687, 818, 838, 1159
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 4 cut(s) 182, 200, 211, 905
SspDI GGCGCC 1 cut(s) 271
SspMI CTAG 2 cut(s) 236, 381
SstI GAGCTC 1 cut(s) 84
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 4 cut(s) 15, 202, 622, 1150
StyI CCWWGG 2 cut(s) 323, 735
TaaI ACNGT 3 cut(s) 768, 1013, 1121
TaiI ACGT 1 cut(s) 350
TaqI TCGA 4 cut(s) 303, 318, 685, 846
TasI AATT 6 cut(s) 314, 568, 687, 818, 838, 1159
TatI WGTACW 3 cut(s) 473, 881, 954
TauI GCSGC 3 cut(s) 184, 202, 908
TfiI GAWTC 2 cut(s) 158, 558
Tru1I TTAA 1 cut(s) 873
Tru9I TTAA 1 cut(s) 873
TscAI CASTG 2 cut(s) 1018, 1027
TseI GCWGC 9 cut(s) 20, 44, 175, 178, 328, 422, 775, 1087, 1105
TspDTI ATGAA 4 cut(s) 40, 233, 811, 1172
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 2 cut(s) 1018, 1027
Van91I CCANNNNNTGG 1 cut(s) 823
VpaK11BI GGWCC 1 cut(s) 730
VspI ATTAAT 1 cut(s) 873
XapI RAATTY 2 cut(s) 314, 687
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 2 cut(s) 118, 1030
XspI CTAG 2 cut(s) 236, 381
ZrmI AGTACT 1 cut(s) 475
Zsp2I ATGCAT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.