Rmu_sc0002460.1_g000042
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002460.1
Physical Location & Seq
Reverse (-)
165551 .. 166859
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002460.1_g000042.1.cds

Sequence Viewer

Length: 1056 bp
atggagagcaccgattcgtcgttcggctctcagccgccgccacagccaaacctgccgccggggttccgcttccaccccaccgatgaggagctagtcgttcattacctcaagaaaaaggtctcctcggcgcctctccccgttgccatcatcgccgaggtcgacctctacaaattcgatccatggcagctccctgaaactgatatgatgtatgatttgacagaaaaggcgacgttcggagagcaagagtggtattttttcagtcctagagaccggaagtacccaaacggagcacggcctaatagagcagcgacttcagggtattggaaggcgacgggaactgataagccggttttgagtactactgatgagggaggtgggggtactcggaaagttggggtgaaaaaagcacttgttttctacagaggaaagcccccaaaaggaatcaaaaccaattggatcatgcatgagtataggcttgctgataacaacccaagtaacaagccacctgggtgtcaaggcttgggtaacaagaagaactccttgaggcttgatgattgggtgctttgtcgaatttacaagaagaacaacacgcataggccgatggatcaggaggactccatggaagacatgatgggatcgtcgttccaactgtcgaagctgcaccaccttcccccgaaatctaccacatcaacctactcccaattcatggacaacgaccacaatttattcgactggatggtaagccacgaagggattaatagtagtacagcttcttttcttccaaacgcggctttggccaacagctctctccctctaaaacggggtctcccgagtctgtactggaatgatcaggaggacgaagctggaccttcaaggagactacagctggataacagtgatagcactggaaatggttctattgccactctgctttctcagctccctcagacacctcctccattgcaccagcagccaatgctggggtcacagctcggtggcgacagtctgtttcgtgatacacaatatcaacttccggggatgaattggtattcttag

Protein Analysis

351

Amino Acids

39.43

Weight (kDa)

6.51

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011796)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 127
AccB7I CCANNNNNTGG 1 cut(s) 706
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 788
AciI CCGC 5 cut(s) 35, 38, 56, 67, 788
AclWI GGATC 4 cut(s) 170, 464, 612, 643
AcoI YGGCCR 1 cut(s) 795
AcsI RAATTY 2 cut(s) 170, 570
AcuI CTGAAG 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 5 cut(s) 278, 358, 382, 766, 839
AfiI CCNNNNNNNGG 4 cut(s) 58, 437, 706, 980
AgsI TTSAA 1 cut(s) 873
AjnI CCWGG 1 cut(s) 505
AleI CACNNNNGTG 1 cut(s) 508
AluBI AGCT 9 cut(s) 91, 187, 658, 770, 804, 863, 886, 940, 991
AluI AGCT 9 cut(s) 91, 187, 658, 770, 804, 863, 886, 940, 991
Alw21I GWGCWC 2 cut(s) 11, 292
Alw26I GTCTC 4 cut(s) 124, 261, 830, 871
AlwI GGATC 4 cut(s) 170, 464, 612, 643
Ama87I CYCGRG 1 cut(s) 829
AoxI GGCC 3 cut(s) 293, 596, 795
ApeKI GCWGC 4 cut(s) 184, 305, 658, 970
ApoI RAATTY 2 cut(s) 170, 570
AseI ATTAAT 1 cut(s) 756
Asp700I GAANNNNTTC 1 cut(s) 913
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 866
AsuC2I CCSGG 2 cut(s) 60, 1035
AsuHPI GGTGA 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 829
AvaII GGWCC 1 cut(s) 866
BalI TGGCCA 1 cut(s) 797
BanI GGYRCC 1 cut(s) 127
BarI GAAGNNNNNNTAC 2 cut(s) 754, 786
BbsI GAAGAC 1 cut(s) 630
Bbv12I GWGCWC 2 cut(s) 11, 292
BbvI GCAGC 4 cut(s) 196, 317, 645, 982
BccI CCATC 4 cut(s) 152, 595, 625, 730
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 507
BclI TGATCA 1 cut(s) 847
BcnI CCSGG 2 cut(s) 60, 1035
BcoDI GTCTC 4 cut(s) 124, 261, 830, 871
BfaI CTAG 2 cut(s) 92, 264
BfmI CTRYAG 2 cut(s) 418, 881
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 60
BisI GCNGC 8 cut(s) 35, 38, 56, 185, 306, 659, 789, 971
BlsI GCNGC 8 cut(s) 36, 39, 57, 186, 307, 660, 790, 972
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 3 cut(s) 60, 507, 1035
Bme18I GGWCC 1 cut(s) 866
BmeT110I CYCGRG 1 cut(s) 829
BmgT120I GGNCC 1 cut(s) 866
BmiI GGNNCC 2 cut(s) 65, 129
BmrFI CCNGG 3 cut(s) 60, 507, 1035
BpiI GAAGAC 1 cut(s) 630
BpuEI CTTGAG 2 cut(s) 92, 562
BpuMI CCSGG 2 cut(s) 60, 1035
BsaHI GRCGYC 1 cut(s) 128
BsaI GGTCTC 3 cut(s) 124, 261, 830
BsaJI CCNNGG 7 cut(s) 59, 123, 153, 179, 506, 618, 1034
BsaWI WCCGGW 1 cut(s) 270
BsaXI ACNNNNNCTCC 4 cut(s) 810, 840, 940, 970
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 437, 706, 980
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 3 cut(s) 737, 845, 910
Bse3DI GCAATG 1 cut(s) 959
BseBI CCWGG 1 cut(s) 507
BseDI CCNNGG 7 cut(s) 59, 123, 153, 179, 506, 618, 1034
BseGI GGATG 2 cut(s) 741, 1044
BseLI CCNNNNNNNGG 4 cut(s) 58, 437, 706, 980
BseMI GCAATG 1 cut(s) 959
BseMII CTCAG 3 cut(s) 44, 950, 959
BseNI ACTGG 3 cut(s) 737, 845, 910
BseRI GAGGAG 3 cut(s) 101, 112, 945
BseXI GCAGC 4 cut(s) 196, 317, 645, 982
BseYI CCCAGC 1 cut(s) 979
BsgI GTGCAG 1 cut(s) 644
Bsh1236I CGCG 1 cut(s) 788
BshFI GGCC 3 cut(s) 295, 598, 797
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 2 cut(s) 11, 292
BsiHKCI CYCGRG 1 cut(s) 829
BsiSI CCGG 4 cut(s) 59, 271, 347, 1034
BslI CCNNNNNNNGG 4 cut(s) 58, 437, 706, 980
BsmAI GTCTC 4 cut(s) 124, 261, 830, 871
BsnI GGCC 3 cut(s) 295, 598, 797
Bso31I GGTCTC 3 cut(s) 124, 261, 830
BsoBI CYCGRG 1 cut(s) 829
Bsp1286I GDGCHC 2 cut(s) 11, 292
Bsp143I GATC 5 cut(s) 175, 456, 604, 635, 847
Bsp19I CCATGG 2 cut(s) 179, 618
BspACI CCGC 5 cut(s) 35, 38, 56, 67, 788
BspANI GGCC 3 cut(s) 295, 598, 797
BspCNI CTCAG 3 cut(s) 43, 949, 958
BspFNI CGCG 1 cut(s) 788
BspLI GGNNCC 2 cut(s) 65, 129
BspMI ACCTGC 1 cut(s) 60
BspPI GGATC 4 cut(s) 170, 464, 612, 643
BspT107I GGYRCC 1 cut(s) 127
BspTNI GGTCTC 3 cut(s) 124, 261, 830
BsrDI GCAATG 1 cut(s) 959
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 3 cut(s) 737, 845, 910
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 7 cut(s) 59, 123, 153, 179, 506, 618, 1034
BssMI GATC 5 cut(s) 175, 456, 604, 635, 847
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 2 cut(s) 179, 618
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 3 cut(s) 651, 896, 1004
BstACI GRCGYC 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 976
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 4 cut(s) 30, 936, 945, 1053
BstDSI CCRYGG 2 cut(s) 179, 618
BstF5I GGATG 2 cut(s) 741, 1044
BstFNI CGCG 1 cut(s) 788
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 5 cut(s) 178, 459, 607, 638, 850
BstMAI GTCTC 4 cut(s) 124, 261, 830, 871
BstMBI GATC 5 cut(s) 175, 456, 604, 635, 847
BstMWI GCNNNNNNNGC 7 cut(s) 43, 52, 149, 794, 937, 970, 976
BstNI CCWGG 1 cut(s) 507
BstSCI CCNGG 3 cut(s) 58, 505, 1033
BstSFI CTRYAG 2 cut(s) 418, 881
BstUI CGCG 1 cut(s) 788
BstV1I GCAGC 4 cut(s) 196, 317, 645, 982
BstV2I GAAGAC 1 cut(s) 630
BsuRI GGCC 3 cut(s) 295, 598, 797
BtgI CCRYGG 2 cut(s) 179, 618
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 2 cut(s) 741, 1044
BtsIMutI CAGTG 2 cut(s) 901, 903
BveI ACCTGC 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 477
CfoI GCGC 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 866
Csp6I GTAC 5 cut(s) 277, 357, 381, 765, 838
CviAII CATG 6 cut(s) 180, 460, 464, 619, 628, 706
CviQI GTAC 5 cut(s) 277, 357, 381, 765, 838
DdeI CTNAG 4 cut(s) 30, 936, 945, 1053
DinI GGCGCC 1 cut(s) 129
DpnI GATC 5 cut(s) 177, 458, 606, 637, 849
DpnII GATC 5 cut(s) 175, 456, 604, 635, 847
EaeI YGGCCR 1 cut(s) 795
Eco130I CCWWGG 2 cut(s) 179, 618
Eco31I GGTCTC 3 cut(s) 124, 261, 830
Eco47I GGWCC 1 cut(s) 866
Eco57I CTGAAG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 829
EcoRII CCWGG 1 cut(s) 505
EcoT14I CCWWGG 2 cut(s) 179, 618
EcoT22I ATGCAT 1 cut(s) 465
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 2 cut(s) 179, 618
FaeI CATG 6 cut(s) 183, 463, 467, 622, 631, 709
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FatI CATG 6 cut(s) 179, 459, 463, 618, 627, 705
FbaI TGATCA 1 cut(s) 847
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 8 cut(s) 35, 38, 56, 185, 306, 659, 789, 971
FokI GGATG 2 cut(s) 748, 1051
Fsp4HI GCNGC 8 cut(s) 35, 38, 56, 185, 306, 659, 789, 971
FspBI CTAG 2 cut(s) 92, 264
GlaI GCGC 1 cut(s) 129
GluI GCNGC 8 cut(s) 35, 38, 56, 185, 306, 659, 789, 971
GsaI CCCAGC 1 cut(s) 983
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 3 cut(s) 295, 598, 797
HapII CCGG 4 cut(s) 59, 271, 347, 1034
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 6 cut(s) 183, 463, 467, 622, 631, 709
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 4 cut(s) 14, 441, 614, 832
HpaII CCGG 4 cut(s) 59, 271, 347, 1034
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 3 cut(s) 236, 387, 948
Hpy188III TCNNGA 5 cut(s) 109, 608, 829, 851, 1013
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 4 cut(s) 22, 232, 334, 643
HpyAV CCTTC 4 cut(s) 319, 677, 743, 879
HpyCH4III ACNGT 3 cut(s) 651, 896, 1004
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 3 cut(s) 463, 661, 964
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 52, 149, 794, 937, 970, 976
HpyF3I CTNAG 4 cut(s) 30, 936, 945, 1053
HpySE526I ACGT 1 cut(s) 230
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 6 cut(s) 183, 463, 467, 622, 631, 709
HspAI GCGC 1 cut(s) 128
KasI GGCGCC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 5 cut(s) 175, 456, 604, 635, 847
LmnI GCTCC 4 cut(s) 88, 192, 287, 945
Lsp1109I GCAGC 4 cut(s) 196, 317, 645, 982
MaeI CTAG 2 cut(s) 92, 264
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 3 cut(s) 494, 524, 984
MalI GATC 5 cut(s) 177, 458, 606, 637, 849
MboI GATC 5 cut(s) 175, 456, 604, 635, 847
MboII GAAGA 4 cut(s) 544, 592, 635, 770
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 11, 292
MlsI TGGCCA 1 cut(s) 797
MluCI AATT 6 cut(s) 170, 451, 570, 701, 721, 1042
MluNI TGGCCA 1 cut(s) 797
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 2 cut(s) 608, 841
MmeI TCCRAC 1 cut(s) 670
Mox20I TGGCCA 1 cut(s) 797
Mph1103I ATGCAT 1 cut(s) 465
MroXI GAANNNNTTC 1 cut(s) 913
MscI TGGCCA 1 cut(s) 797
MseI TTAA 1 cut(s) 756
MslI CAYNNNNRTG 1 cut(s) 508
Msp20I TGGCCA 1 cut(s) 797
MspA1I CMGCKG 1 cut(s) 886
MspI CCGG 4 cut(s) 59, 271, 347, 1034
MspR9I CCNGG 3 cut(s) 60, 507, 1035
MunI CAATTG 1 cut(s) 451
MvaI CCWGG 1 cut(s) 507
MvnI CGCG 1 cut(s) 788
MwoI GCNNNNNNNGC 7 cut(s) 43, 52, 149, 794, 937, 970, 976
NarI GGCGCC 1 cut(s) 128
NciI CCSGG 2 cut(s) 60, 1035
NcoI CCATGG 2 cut(s) 179, 618
NdeII GATC 5 cut(s) 175, 456, 604, 635, 847
NlaIII CATG 6 cut(s) 183, 463, 467, 622, 631, 709
NlaIV GGNNCC 2 cut(s) 65, 129
NmeAIII GCCGAG 2 cut(s) 104, 178
NmuCI GTSAC 1 cut(s) 984
NsiI ATGCAT 1 cut(s) 465
OliI CACNNNNGTG 1 cut(s) 508
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 596
PdmI GAANNNNTTC 1 cut(s) 913
PfeI GAWTC 2 cut(s) 14, 441
PflMI CCANNNNNTGG 1 cut(s) 706
PkrI GCNGC 8 cut(s) 36, 39, 57, 186, 307, 660, 790, 972
PleI GAGTC 2 cut(s) 608, 840
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 2 cut(s) 608, 840
PshBI ATTAAT 1 cut(s) 756
Psp6I CCWGG 1 cut(s) 505
PspFI CCCAGC 1 cut(s) 979
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 2 cut(s) 65, 129
PspPI GGNCC 1 cut(s) 866
PvuII CAGCTG 1 cut(s) 886
RsaI GTAC 5 cut(s) 278, 358, 382, 766, 839
RsaNI GTAC 5 cut(s) 277, 357, 381, 765, 838
RseI CAYNNNNRTG 1 cut(s) 508
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 8 cut(s) 35, 38, 56, 185, 306, 659, 789, 971
Sau3AI GATC 5 cut(s) 175, 456, 604, 635, 847
Sau96I GGNCC 1 cut(s) 866
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 2 cut(s) 608, 841
ScrFI CCNGG 3 cut(s) 60, 507, 1035
SduI GDGCHC 2 cut(s) 11, 292
SfcI CTRYAG 2 cut(s) 418, 881
SfoI GGCGCC 1 cut(s) 129
SinI GGWCC 1 cut(s) 866
SmiMI CAYNNNNRTG 1 cut(s) 508
SmlI CTYRAG 2 cut(s) 107, 541
SmoI CTYRAG 2 cut(s) 107, 541
Sse9I AATT 6 cut(s) 170, 451, 570, 701, 721, 1042
SsiI CCGC 5 cut(s) 35, 38, 56, 67, 788
SspDI GGCGCC 1 cut(s) 127
SspMI CTAG 2 cut(s) 92, 264
StyD4I CCNGG 3 cut(s) 58, 505, 1033
StyI CCWWGG 2 cut(s) 179, 618
TaaI ACNGT 3 cut(s) 651, 896, 1004
TaiI ACGT 1 cut(s) 233
TaqI TCGA 5 cut(s) 159, 174, 568, 653, 729
TasI AATT 6 cut(s) 170, 451, 570, 701, 721, 1042
TatI WGTACW 3 cut(s) 356, 764, 837
TauI GCSGC 4 cut(s) 37, 40, 58, 791
TfiI GAWTC 2 cut(s) 14, 441
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 2 cut(s) 901, 910
TseFI GTSAC 1 cut(s) 984
TseI GCWGC 4 cut(s) 184, 305, 658, 970
Tsp45I GTSAC 1 cut(s) 984
TspDTI ATGAA 3 cut(s) 89, 694, 1055
TspGWI ACGGA 1 cut(s) 300
TspRI CASTG 2 cut(s) 901, 910
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 1 cut(s) 866
VspI ATTAAT 1 cut(s) 756
XapI RAATTY 2 cut(s) 170, 570
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 913
XspI CTAG 2 cut(s) 92, 264
ZrmI AGTACT 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.