RchiOBHm_Chr5g0034821
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011796
Physical Location & Seq
Forward (+)
28712621 .. 28714168
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31377

Sequence Viewer

Length: 1029 bp
ATGGAGAGCACCGATTCGTCGTTCGGCTCGCAGCCGCCGCCACAGCCAAACCTGCCGCCGGGGTTCCGCTTCCACCCCACCGATGAGGAGCTAGTCGTTCATTACCTCAAGAAAAAGGCCTCCTCAGCGCCTCTCCCCGTTGCCATCATCGCCGAGGTCGACCTCTACAAATTCGATCCATGGCAGCTCCCTGAAAAGGCGACGTTCGGAGAGCAAGAGTGGTATTTTTTCAGTCCTAGAGACCGGAAGTACCCAAACGGAGCACGGCCTAATAGAGCAGCGACTTCAGGGTATTGGAAGGCGACGGGAACTGATAAGCCGGTTTTGAGTACTACTGATGAGGGAGGTAGGGGTACTCGGAAAGTTGGGGTGAAAAAAGCACTTGTTTTCTACAGAGGAAAGCCCCCAAAAGGAATCAAAACCAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAACACAAGTAACAAGCCACCTGGGTGTCATGGCTTGGGTAACAAGAAGAACTCCTTGAGGCTTGATGATTGGGTGCTTTGTCGAATTTACAAGAAGAACAACACGCATAGGCCGATGGATCAGGAGGACCCCATGGAAGACATGATGGGATCGTCGTTCCAACTGTCGAAGCTGCACCACCTTCCCCCGAAATCTACCACATCAACCTACTCCCAATTCATGGACAACGACCACAATTTATTCGACTGGATGGTAAGCCACGAAGGGATTAATAGTAGTACAGCTTCTTTTCTTCCAAACGCGGCTCTGGCCAATAGCTCTCTCCCTCTAAAACGGGGACTCCCGAGTCTGTACTGGAATGATCAGGAGGACGAAGCTGGGCCTTCAAGGAGACTACAGCTGGATAACAGTGATAGCACTGGAAATGGTTCTATTGCCACTCTGCTTTCTCAGCTCCCTCAGACACCTCCTCCATTGCACCAGCAGCCAATGCTGGGGTCACAGCTCGGTGGCGACGGTCTGTTTCGTGATACACAATATCAACTTCCGGGGATGAATTGGTATTCTTAG

Protein Analysis

342

Amino Acids

38.39

Weight (kDa)

8.34

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 150 1.9e-51 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011796)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52880 AT3G15510
fragaria_vesca FvH4_3g20700
malus_domestica MD03G1222600.v1.1 MD11G1239900.v1.1
prunus_persica Prupe.4G187100_v2.0.a1 Prupe.4G187100_v2.0.a1
pyrus_communis pycom03g17130 pycom11g21170
rosa_chinensis RchiOBHm_Chr5g0034821
rosa_laevigata RLG00000033580
rosa_multiflora Rmu_sc0002460.1_g000042
rosa_roxburghii Rroxscaffold_1G00045490
rosa_rugosa Rorug05G0148600
rosa_samantha Rh5AG241000 Rh5BG241100 Rh5CG272100 Rh5DG249600
rosa_wichuraiana Rw5G022030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 804
Acc36I ACCTGC 1 cut(s) 60
AccB7I CCANNNNNTGG 1 cut(s) 679
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 761
AciI CCGC 5 cut(s) 35, 38, 56, 67, 761
AclWI GGATC 4 cut(s) 170, 437, 585, 616
AcoI YGGCCR 1 cut(s) 768
AcsI RAATTY 2 cut(s) 170, 543
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 5 cut(s) 251, 331, 355, 739, 812
AfiI CCNNNNNNNGG 5 cut(s) 58, 196, 410, 679, 953
AgsI TTSAA 1 cut(s) 846
AjnI CCWGG 1 cut(s) 478
AleI CACNNNNGTG 1 cut(s) 481
AluBI AGCT 9 cut(s) 91, 187, 631, 743, 777, 836, 859, 913, 964
AluI AGCT 9 cut(s) 91, 187, 631, 743, 777, 836, 859, 913, 964
Alw21I GWGCWC 2 cut(s) 11, 265
Alw26I GTCTC 2 cut(s) 234, 844
AlwI GGATC 4 cut(s) 170, 437, 585, 616
Ama87I CYCGRG 1 cut(s) 802
AoxI GGCC 5 cut(s) 117, 266, 569, 768, 839
ApeKI GCWGC 5 cut(s) 31, 184, 278, 631, 943
ApoI RAATTY 2 cut(s) 170, 543
AseI ATTAAT 1 cut(s) 729
Asp700I GAANNNNTTC 1 cut(s) 886
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 586, 839
AsuC2I CCSGG 2 cut(s) 60, 1008
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 802
AvaII GGWCC 1 cut(s) 586
BalI TGGCCA 1 cut(s) 770
BarI GAAGNNNNNNTAC 2 cut(s) 727, 759
BbsI GAAGAC 1 cut(s) 603
Bbv12I GWGCWC 2 cut(s) 11, 265
BbvCI CCTCAGC 1 cut(s) 124
BbvI GCAGC 5 cut(s) 43, 196, 290, 618, 955
BccI CCATC 4 cut(s) 152, 568, 598, 703
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 480
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 2 cut(s) 60, 1008
BcoDI GTCTC 2 cut(s) 234, 844
BfaI CTAG 2 cut(s) 92, 237
BfmI CTRYAG 2 cut(s) 391, 854
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 60
BisI GCNGC 9 cut(s) 32, 35, 38, 56, 185, 279, 632, 762, 944
BlsI GCNGC 9 cut(s) 33, 36, 39, 57, 186, 280, 633, 763, 945
BmcAI AGTACT 1 cut(s) 331
Bme1390I CCNGG 3 cut(s) 60, 480, 1008
Bme18I GGWCC 1 cut(s) 586
BmeT110I CYCGRG 1 cut(s) 802
BmgT120I GGNCC 2 cut(s) 586, 839
BmiI GGNNCC 2 cut(s) 65, 588
BmrFI CCNGG 3 cut(s) 60, 480, 1008
BpiI GAAGAC 1 cut(s) 603
Bpu10I CCTNAGC 1 cut(s) 124
BpuEI CTTGAG 2 cut(s) 92, 535
BpuMI CCSGG 2 cut(s) 60, 1008
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 6 cut(s) 59, 153, 179, 479, 591, 1007
BsaWI WCCGGW 1 cut(s) 243
BsaXI ACNNNNNCTCC 4 cut(s) 783, 813, 913, 943
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 196, 410, 679, 953
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 3 cut(s) 710, 818, 883
Bse3DI GCAATG 1 cut(s) 932
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 6 cut(s) 59, 153, 179, 479, 591, 1007
BseGI GGATG 2 cut(s) 714, 1017
BseLI CCNNNNNNNGG 5 cut(s) 58, 196, 410, 679, 953
BseMI GCAATG 1 cut(s) 932
BseMII CTCAG 3 cut(s) 138, 923, 932
BseNI ACTGG 3 cut(s) 710, 818, 883
BseRI GAGGAG 3 cut(s) 101, 112, 918
BseXI GCAGC 5 cut(s) 43, 196, 290, 618, 955
BseYI CCCAGC 2 cut(s) 836, 952
BsgI GTGCAG 1 cut(s) 617
Bsh1236I CGCG 1 cut(s) 761
BshFI GGCC 5 cut(s) 119, 268, 571, 770, 841
BsiHKAI GWGCWC 2 cut(s) 11, 265
BsiHKCI CYCGRG 1 cut(s) 802
BsiSI CCGG 4 cut(s) 59, 244, 320, 1007
BslFI GGGAC 1 cut(s) 810
BslI CCNNNNNNNGG 5 cut(s) 58, 196, 410, 679, 953
BsmAI GTCTC 2 cut(s) 234, 844
BsmFI GGGAC 1 cut(s) 810
BsnI GGCC 5 cut(s) 119, 268, 571, 770, 841
Bso31I GGTCTC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 802
Bsp1286I GDGCHC 2 cut(s) 11, 265
Bsp143I GATC 5 cut(s) 175, 429, 577, 608, 820
Bsp19I CCATGG 2 cut(s) 179, 591
BspACI CCGC 5 cut(s) 35, 38, 56, 67, 761
BspANI GGCC 5 cut(s) 119, 268, 571, 770, 841
BspCNI CTCAG 3 cut(s) 137, 922, 931
BspFNI CGCG 1 cut(s) 761
BspLI GGNNCC 2 cut(s) 65, 588
BspMI ACCTGC 1 cut(s) 60
BspPI GGATC 4 cut(s) 170, 437, 585, 616
BspTNI GGTCTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 932
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 3 cut(s) 710, 818, 883
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 6 cut(s) 59, 153, 179, 479, 591, 1007
BssMI GATC 5 cut(s) 175, 429, 577, 608, 820
BssT1I CCWWGG 2 cut(s) 179, 591
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 3 cut(s) 624, 869, 977
BstAPI GCANNNNNTGC 1 cut(s) 949
BstC8I GCNNGC 2 cut(s) 29, 450
BstDEI CTNAG 4 cut(s) 124, 909, 918, 1026
BstDSI CCRYGG 2 cut(s) 179, 591
BstF5I GGATG 2 cut(s) 714, 1017
BstFNI CGCG 1 cut(s) 761
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 5 cut(s) 178, 432, 580, 611, 823
BstMAI GTCTC 2 cut(s) 234, 844
BstMBI GATC 5 cut(s) 175, 429, 577, 608, 820
BstMWI GCNNNNNNNGC 9 cut(s) 37, 43, 52, 125, 149, 767, 910, 943, 949
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 3 cut(s) 58, 478, 1006
BstSFI CTRYAG 2 cut(s) 391, 854
BstUI CGCG 1 cut(s) 761
BstV1I GCAGC 5 cut(s) 43, 196, 290, 618, 955
BstV2I GAAGAC 1 cut(s) 603
BsuRI GGCC 5 cut(s) 119, 268, 571, 770, 841
BtgI CCRYGG 2 cut(s) 179, 591
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 2 cut(s) 714, 1017
BtsIMutI CAGTG 2 cut(s) 874, 876
BveI ACCTGC 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 29, 450
CfoI GCGC 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 586, 839
Csp6I GTAC 5 cut(s) 250, 330, 354, 738, 811
CviAII CATG 7 cut(s) 180, 433, 437, 488, 592, 601, 679
CviQI GTAC 5 cut(s) 250, 330, 354, 738, 811
DdeI CTNAG 4 cut(s) 124, 909, 918, 1026
DpnI GATC 5 cut(s) 177, 431, 579, 610, 822
DpnII GATC 5 cut(s) 175, 429, 577, 608, 820
DrdI GACNNNNNNGTC 1 cut(s) 804
DseDI GACNNNNNNGTC 1 cut(s) 804
EaeI YGGCCR 1 cut(s) 768
Eco130I CCWWGG 2 cut(s) 179, 591
Eco147I AGGCCT 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 586
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 802
EcoO109I RGGNCCY 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 2 cut(s) 179, 591
EcoT22I ATGCAT 1 cut(s) 438
ErhI CCWWGG 2 cut(s) 179, 591
FaeI CATG 7 cut(s) 183, 436, 440, 491, 595, 604, 682
FaiI YATR 9 cut(s) 181, 434, 438, 444, 489, 567, 593, 602, 680
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FaqI GGGAC 1 cut(s) 810
FatI CATG 7 cut(s) 179, 432, 436, 487, 591, 600, 678
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 9 cut(s) 32, 35, 38, 56, 185, 279, 632, 762, 944
FokI GGATG 2 cut(s) 721, 1024
Fsp4HI GCNGC 9 cut(s) 32, 35, 38, 56, 185, 279, 632, 762, 944
FspBI CTAG 2 cut(s) 92, 237
GlaI GCGC 1 cut(s) 129
GluI GCNGC 9 cut(s) 32, 35, 38, 56, 185, 279, 632, 762, 944
GsaI CCCAGC 2 cut(s) 840, 956
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 5 cut(s) 119, 268, 571, 770, 841
HapII CCGG 4 cut(s) 59, 244, 320, 1007
HhaI GCGC 1 cut(s) 130
Hin1II CATG 7 cut(s) 183, 436, 440, 491, 595, 604, 682
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 4 cut(s) 14, 414, 798, 805
HpaII CCGG 4 cut(s) 59, 244, 320, 1007
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 3 cut(s) 209, 360, 921
Hpy188III TCNNGA 5 cut(s) 109, 581, 802, 824, 986
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 5 cut(s) 22, 205, 307, 616, 977
HpyAV CCTTC 4 cut(s) 292, 650, 716, 852
HpyCH4III ACNGT 3 cut(s) 624, 869, 977
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 3 cut(s) 436, 634, 937
HpyF10VI GCNNNNNNNGC 9 cut(s) 37, 43, 52, 125, 149, 767, 910, 943, 949
HpyF3I CTNAG 4 cut(s) 124, 909, 918, 1026
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 7 cut(s) 183, 436, 440, 491, 595, 604, 682
HspAI GCGC 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 5 cut(s) 175, 429, 577, 608, 820
LmnI GCTCC 4 cut(s) 88, 192, 260, 918
Lsp1109I GCAGC 5 cut(s) 43, 196, 290, 618, 955
MaeI CTAG 2 cut(s) 92, 237
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 3 cut(s) 467, 497, 957
MalI GATC 5 cut(s) 177, 431, 579, 610, 822
MboI GATC 5 cut(s) 175, 429, 577, 608, 820
MboII GAAGA 4 cut(s) 517, 565, 608, 743
MfeI CAATTG 1 cut(s) 424
MhlI GDGCHC 2 cut(s) 11, 265
MlsI TGGCCA 1 cut(s) 770
MluCI AATT 6 cut(s) 170, 424, 543, 674, 694, 1015
MluNI TGGCCA 1 cut(s) 770
MlyI GAGTC 2 cut(s) 792, 814
MmeI TCCRAC 1 cut(s) 643
Mox20I TGGCCA 1 cut(s) 770
Mph1103I ATGCAT 1 cut(s) 438
MroXI GAANNNNTTC 1 cut(s) 886
MscI TGGCCA 1 cut(s) 770
MseI TTAA 1 cut(s) 729
MslI CAYNNNNRTG 1 cut(s) 481
Msp20I TGGCCA 1 cut(s) 770
MspA1I CMGCKG 1 cut(s) 859
MspI CCGG 4 cut(s) 59, 244, 320, 1007
MspR9I CCNGG 3 cut(s) 60, 480, 1008
MunI CAATTG 1 cut(s) 424
MvaI CCWGG 1 cut(s) 480
MvnI CGCG 1 cut(s) 761
MwoI GCNNNNNNNGC 9 cut(s) 37, 43, 52, 125, 149, 767, 910, 943, 949
NciI CCSGG 2 cut(s) 60, 1008
NcoI CCATGG 2 cut(s) 179, 591
NdeII GATC 5 cut(s) 175, 429, 577, 608, 820
NlaIII CATG 7 cut(s) 183, 436, 440, 491, 595, 604, 682
NlaIV GGNNCC 2 cut(s) 65, 588
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 957
NsiI ATGCAT 1 cut(s) 438
OliI CACNNNNGTG 1 cut(s) 481
PceI AGGCCT 1 cut(s) 119
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 569
PdmI GAANNNNTTC 1 cut(s) 886
PfeI GAWTC 2 cut(s) 14, 414
PflMI CCANNNNNTGG 1 cut(s) 679
PkrI GCNGC 9 cut(s) 33, 36, 39, 57, 186, 280, 633, 763, 945
PleI GAGTC 2 cut(s) 792, 813
PpsI GAGTC 2 cut(s) 792, 813
PpuMI RGGWCCY 1 cut(s) 586
PshBI ATTAAT 1 cut(s) 729
Psp5II RGGWCCY 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 478
PspFI CCCAGC 2 cut(s) 836, 952
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 2 cut(s) 65, 588
PspPI GGNCC 2 cut(s) 586, 839
PspPPI RGGWCCY 1 cut(s) 586
PvuII CAGCTG 1 cut(s) 859
RsaI GTAC 5 cut(s) 251, 331, 355, 739, 812
RsaNI GTAC 5 cut(s) 250, 330, 354, 738, 811
RseI CAYNNNNRTG 1 cut(s) 481
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 9 cut(s) 32, 35, 38, 56, 185, 279, 632, 762, 944
Sau3AI GATC 5 cut(s) 175, 429, 577, 608, 820
Sau96I GGNCC 2 cut(s) 586, 839
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 2 cut(s) 792, 814
ScrFI CCNGG 3 cut(s) 60, 480, 1008
SduI GDGCHC 2 cut(s) 11, 265
SfcI CTRYAG 2 cut(s) 391, 854
SinI GGWCC 1 cut(s) 586
SmiMI CAYNNNNRTG 1 cut(s) 481
SmlI CTYRAG 2 cut(s) 107, 514
SmoI CTYRAG 2 cut(s) 107, 514
Sse9I AATT 6 cut(s) 170, 424, 543, 674, 694, 1015
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 5 cut(s) 35, 38, 56, 67, 761
SspMI CTAG 2 cut(s) 92, 237
StuI AGGCCT 1 cut(s) 119
StyD4I CCNGG 3 cut(s) 58, 478, 1006
StyI CCWWGG 2 cut(s) 179, 591
TaaI ACNGT 3 cut(s) 624, 869, 977
TaiI ACGT 1 cut(s) 206
TaqI TCGA 5 cut(s) 159, 174, 541, 626, 702
TasI AATT 6 cut(s) 170, 424, 543, 674, 694, 1015
TatI WGTACW 3 cut(s) 329, 737, 810
TauI GCSGC 4 cut(s) 37, 40, 58, 764
TfiI GAWTC 2 cut(s) 14, 414
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TscAI CASTG 2 cut(s) 874, 883
TseFI GTSAC 1 cut(s) 957
TseI GCWGC 5 cut(s) 31, 184, 278, 631, 943
Tsp45I GTSAC 1 cut(s) 957
TspDTI ATGAA 3 cut(s) 89, 667, 1028
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 2 cut(s) 874, 883
Van91I CCANNNNNTGG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 586
VspI ATTAAT 1 cut(s) 729
XapI RAATTY 2 cut(s) 170, 543
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 886
XspI CTAG 2 cut(s) 92, 237
ZrmI AGTACT 1 cut(s) 331
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.