Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011796

Physical Location & Seq

Genomic Coordinates Reverse (-)

34853957 .. 34855863

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1239900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGAGCACCGACTCGTCAACGGGCTCACAACAGCAGCAGCTGCAGCCGCCACAGCCACCACCTCCTCCGCTGCCAAACCTCCCACCTGGGTTCCGCTTCCACCCGACAGATGAAGAGCTAGTTGTCCACTATCTCAAGAAAAAGGCCACCTCCGCTCCCCTTCCGGTTTCCATCATCGCTGACGTCGACCTTTACAAGTTCGACCCCTGGGAGCTCCCAGCTAAGGCTACGTTTGGAGAGCAAGAGTGGTATTTTTTCAGTCCTAGGGACCGGAAATACCCGAACGGAGCGAGACCAAATAGGGCGGCGACTTCCGGGTATTGGAAGGCGACGGGGACTGATAAGCCGGTGCTGACTTCCGGCGGTATTCAGAAAGTTGGTGTGAAAAAAGCACTTGTGTTCTATGGAGGAAAACCCCCGAAAGGAATTAAAACCAATTGGATTATGCACGAGTACAGGCTTGCTGATAACAAGCCCAACAACAAACCACCAGGGTGTGACTTGGGCAACAAGAAGAACTCCTTGAGGCTTGATGATTGGGTGCTGTGTAGAATTTACAAGAAGAACAACACACATAGGCCGATGGATCATGAGAGGGAGGATTCCATGGAGGACATCTTGGGACCGTTGATGCCACCATCTATAAGTCATGTGGGCCACCATCAGAATATGAAGCTGCACCTTCCAAAGTCTAATTTGAGTTATGGGCCGCCTTTCATGGAAAATAACCAAATTTTTTTTGACGGGATGATGAGCAGCACCGACGGATCGGCTTCTACTCATCAGCTGCCACAAAAACGGCCAATAGTTCCATCCCTGTACTGGAATAATCAGGAGGAGGATGACCAGACGGCTGCTGATCCTTCATCAAGCAAGAGAATACAACTACACCAATTGGACACTGGTACTAATTCTAATGGTGATGGGATTAATGGCGGTGCTACTAATAACAATTCTACTTCTATTGCCAATCTACTTTCCCAGCTTCCTCAGACTCCACCATTGCACCAACATGCAGTATTGGGGTCACTTGGCGACGGTCTATTCCGGACGCCGTATCAACTGCCTGGGAGGAATTGGTATTCTGACTCCAATTTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045995 GO:0048229 GO:0048316 GO:0048317 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048481 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080060 GO:0080090 GO:0090567 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

369

Amino Acids

40.96

Weight (kDa)

8.33

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	29 - 155	3.7e-51	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52880 AT3G15510
fragaria_vesca	FvH4_3g20700
malus_domestica	MD03G1222600.v1.1 MD11G1239900.v1.1
prunus_persica	Prupe.4G187100_v2.0.a1 Prupe.4G187100_v2.0.a1
pyrus_communis	pycom03g17130 pycom11g21170
rosa_chinensis	RchiOBHm_Chr5g0034821
rosa_laevigata	RLG00000033580
rosa_multiflora	Rmu_sc0002460.1_g000042
rosa_roxburghii	Rroxscaffold_1G00045490
rosa_rugosa	Rorug05G0148600
rosa_samantha	Rh5AG241000 Rh5BG241100 Rh5CG272100 Rh5DG249600
rosa_wichuraiana	Rw5G022030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
AccBSI	CCGCTC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	1050
AciI	CCGC	8 cut(s)	50, 71, 97, 156, 308, 366, 713, 939
AclWI	GGATC	3 cut(s)	597, 778, 857
AcoI	YGGCCR	1 cut(s)	803
AcsI	RAATTY	2 cut(s)	555, 735
AcyI	GRCGYC	2 cut(s)	186, 1055
AfaI	GTAC	3 cut(s)	458, 824, 910
AfiI	CCNNNNNNNGG	4 cut(s)	226, 324, 425, 825
AjnI	CCWGG	4 cut(s)	88, 209, 493, 1069
AleI	CACNNNNGTG	1 cut(s)	496
AluBI	AGCT	7 cut(s)	43, 121, 217, 224, 679, 790, 988
AluI	AGCT	7 cut(s)	43, 121, 217, 224, 679, 790, 988
Alw21I	GWGCWC	2 cut(s)	11, 219
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	3 cut(s)	597, 778, 857
AlwNI	CAGNNNCTG	1 cut(s)	43
Aor13HI	TCCGGA	1 cut(s)	1050
AoxI	GGCC	5 cut(s)	147, 581, 658, 710, 803
ApeKI	GCWGC	9 cut(s)	37, 40, 43, 46, 73, 679, 759, 790, 857
ApoI	RAATTY	2 cut(s)	555, 735
AseI	ATTAAT	1 cut(s)	933
AspA2I	CCTAGG	1 cut(s)	266
AspS9I	GGNCC	4 cut(s)	271, 626, 658, 710
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	935
AvaII	GGWCC	2 cut(s)	271, 626
AvrII	CCTAGG	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	29, 219
BauI	CACGAG	1 cut(s)	452
Bbv12I	GWGCWC	2 cut(s)	11, 219
BbvI	GCAGC	9 cut(s)	30, 49, 52, 58, 60, 666, 771, 777, 844
BccI	CCATC	6 cut(s)	182, 580, 649, 672, 823, 920
BceAI	ACGGC	3 cut(s)	818, 870, 1042
BciT130I	CCWGG	4 cut(s)	90, 211, 495, 1071
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	2 cut(s)	122, 267
BfmI	CTRYAG	1 cut(s)	44
BlnI	CCTAGG	1 cut(s)	266
Bme1390I	CCNGG	5 cut(s)	90, 211, 319, 495, 1071
Bme18I	GGWCC	2 cut(s)	271, 626
BmgT120I	GGNCC	4 cut(s)	271, 626, 658, 710
BmiI	GGNNCC	3 cut(s)	95, 272, 627
BmrFI	CCNGG	5 cut(s)	90, 211, 319, 495, 1071
BmsI	GCATC	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	122, 547
BpuMI	CCSGG	1 cut(s)	319
BsaHI	GRCGYC	2 cut(s)	186, 1055
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	7 cut(s)	89, 209, 210, 266, 494, 609, 1070
BsaWI	WCCGGW	3 cut(s)	166, 273, 1050
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	4 cut(s)	226, 324, 425, 825
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	2 cut(s)	830, 910
Bse3DI	GCAATG	1 cut(s)	1004
BseAI	TCCGGA	1 cut(s)	1050
BseBI	CCWGG	4 cut(s)	90, 211, 495, 1071
BseDI	CCNNGG	7 cut(s)	89, 209, 210, 266, 494, 609, 1070
BseGI	GGATG	3 cut(s)	756, 815, 850
BseLI	CCNNNNNNNGG	4 cut(s)	226, 324, 425, 825
BseMI	GCAATG	1 cut(s)	1004
BseMII	CTCAG	1 cut(s)	1007
BseNI	ACTGG	2 cut(s)	830, 910
BseRI	GAGGAG	2 cut(s)	57, 854
BseXI	GCAGC	9 cut(s)	30, 49, 52, 58, 60, 666, 771, 777, 844
BseYI	CCCAGC	2 cut(s)	220, 984
BsgI	GTGCAG	1 cut(s)	665
BshFI	GGCC	5 cut(s)	149, 583, 660, 712, 805
BsiHKAI	GWGCWC	2 cut(s)	11, 219
BsiSI	CCGG	6 cut(s)	167, 274, 318, 350, 363, 1051
BslFI	GGGAC	3 cut(s)	284, 352, 639
BslI	CCNNNNNNNGG	4 cut(s)	226, 324, 425, 825
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	3 cut(s)	284, 352, 639
BsnI	GGCC	5 cut(s)	149, 583, 660, 712, 805
Bso31I	GGTCTC	1 cut(s)	289
Bsp1286I	GDGCHC	3 cut(s)	11, 29, 219
Bsp13I	TCCGGA	1 cut(s)	1050
Bsp143I	GATC	3 cut(s)	589, 770, 862
Bsp19I	CCATGG	1 cut(s)	609
BspACI	CCGC	8 cut(s)	50, 71, 97, 156, 308, 366, 713, 939
BspANI	GGCC	5 cut(s)	149, 583, 660, 712, 805
BspCNI	CTCAG	1 cut(s)	1006
BspEI	TCCGGA	1 cut(s)	1050
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	3 cut(s)	95, 272, 627
BspMAI	CTGCAG	1 cut(s)	48
BspPI	GGATC	3 cut(s)	597, 778, 857
BspQI	GCTCTTC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	1004
BsrFI	RCCGGY	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	830, 910
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	7 cut(s)	89, 209, 210, 266, 494, 609, 1070
BssMI	GATC	3 cut(s)	589, 770, 862
BssNI	GRCGYC	2 cut(s)	186, 1055
BssSI	CACGAG	1 cut(s)	452
BssT1I	CCWWGG	2 cut(s)	266, 609
Bst2BI	CACGAG	1 cut(s)	452
Bst2UI	CCWGG	4 cut(s)	90, 211, 495, 1071
Bst4CI	ACNGT	2 cut(s)	630, 1043
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	2 cut(s)	186, 1055
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	2 cut(s)	225, 993
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	3 cut(s)	756, 815, 850
BstKTI	GATC	3 cut(s)	592, 773, 865
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	3 cut(s)	589, 770, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 46, 49, 55, 155
BstNI	CCWGG	4 cut(s)	90, 211, 495, 1071
BstNSI	RCATGY	1 cut(s)	1019
BstSCI	CCNGG	5 cut(s)	88, 209, 317, 493, 1069
BstSFI	CTRYAG	1 cut(s)	44
BstV1I	GCAGC	9 cut(s)	30, 49, 52, 58, 60, 666, 771, 777, 844
BsuRI	GGCC	5 cut(s)	149, 583, 660, 712, 805
BtgI	CCRYGG	1 cut(s)	609
BtgZI	GCGATG	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	756, 815, 850
BtsIMutI	CAGTG	1 cut(s)	903
Cac8I	GCNNGC	1 cut(s)	465
CaiI	CAGNNNCTG	1 cut(s)	43
CciI	TCATGA	1 cut(s)	592
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	4 cut(s)	271, 626, 658, 710
CseI	GACGC	1 cut(s)	1063
Csp6I	GTAC	3 cut(s)	457, 823, 909
CviAII	CATG	5 cut(s)	593, 610, 653, 721, 1016
CviQI	GTAC	3 cut(s)	457, 823, 909
DdeI	CTNAG	2 cut(s)	225, 993
DpnI	GATC	3 cut(s)	591, 772, 864
DpnII	GATC	3 cut(s)	589, 770, 862
EaeI	YGGCCR	1 cut(s)	803
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	266, 609
Eco24I	GRGCYC	2 cut(s)	29, 219
Eco31I	GGTCTC	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	271, 626
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	4 cut(s)	88, 209, 493, 1069
EcoT14I	CCWWGG	2 cut(s)	266, 609
EcoT38I	GRGCYC	2 cut(s)	29, 219
ErhI	CCWWGG	2 cut(s)	266, 609
FaeI	CATG	5 cut(s)	596, 613, 656, 724, 1019
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	3 cut(s)	284, 352, 639
FatI	CATG	5 cut(s)	592, 609, 652, 720, 1015
FblI	GTMKAC	1 cut(s)	189
FokI	GGATG	3 cut(s)	763, 802, 857
FriOI	GRGCYC	2 cut(s)	29, 219
FspBI	CTAG	2 cut(s)	122, 267
GsaI	CCCAGC	2 cut(s)	224, 988
HaeIII	GGCC	5 cut(s)	149, 583, 660, 712, 805
HapII	CCGG	6 cut(s)	167, 274, 318, 350, 363, 1051
HgaI	GACGC	1 cut(s)	1063
Hin1I	GRCGYC	2 cut(s)	186, 1055
Hin1II	CATG	5 cut(s)	596, 613, 656, 724, 1019
HincII	GTYRAC	2 cut(s)	21, 190
HindII	GTYRAC	2 cut(s)	21, 190
HinfI	GANTC	4 cut(s)	14, 605, 997, 1091
HpaII	CCGG	6 cut(s)	167, 274, 318, 350, 363, 1051
HphI	GGTGA	1 cut(s)	935
Hpy166II	GTNNAC	3 cut(s)	21, 130, 190
Hpy188I	TCNGA	4 cut(s)	375, 669, 996, 1090
Hpy188III	TCNNGA	4 cut(s)	139, 593, 836, 1051
Hpy8I	GTNNAC	3 cut(s)	21, 130, 190
Hpy99I	CGWCG	4 cut(s)	191, 337, 770, 1043
HpyAV	CCTTC	4 cut(s)	173, 322, 695, 876
HpyCH4III	ACNGT	2 cut(s)	630, 1043
HpyCH4IV	ACGT	2 cut(s)	186, 233
HpyCH4V	TGCA	5 cut(s)	46, 451, 682, 1009, 1019
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 46, 49, 55, 155
HpyF3I	CTNAG	2 cut(s)	225, 993
HpySE526I	ACGT	2 cut(s)	186, 233
Hsp92I	GRCGYC	2 cut(s)	186, 1055
Hsp92II	CATG	5 cut(s)	596, 613, 656, 724, 1019
Kpn2I	TCCGGA	1 cut(s)	1050
Kzo9I	GATC	3 cut(s)	589, 770, 862
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	4 cut(s)	163, 214, 222, 290
Lsp1109I	GCAGC	9 cut(s)	30, 49, 52, 58, 60, 666, 771, 777, 844
LweI	GCATC	1 cut(s)	624
MaeI	CTAG	2 cut(s)	122, 267
MaeII	ACGT	2 cut(s)	186, 233
MaeIII	GTNAC	2 cut(s)	500, 1029
MalI	GATC	3 cut(s)	591, 772, 864
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	3 cut(s)	589, 770, 862
MboII	GAAGA	3 cut(s)	128, 529, 577
MfeI	CAATTG	2 cut(s)	439, 896
MhlI	GDGCHC	3 cut(s)	11, 29, 219
MlyI	GAGTC	3 cut(s)	8, 991, 1085
MroI	TCCGGA	1 cut(s)	1050
MseI	TTAA	2 cut(s)	432, 933
MslI	CAYNNNNRTG	2 cut(s)	496, 1014
MspA1I	CMGCKG	3 cut(s)	43, 73, 790
MspI	CCGG	6 cut(s)	167, 274, 318, 350, 363, 1051
MspR9I	CCNGG	5 cut(s)	90, 211, 319, 495, 1071
MunI	CAATTG	2 cut(s)	439, 896
MvaI	CCWGG	4 cut(s)	90, 211, 495, 1071
MwoI	GCNNNNNNNGC	5 cut(s)	43, 46, 49, 55, 155
NciI	CCSGG	1 cut(s)	319
NcoI	CCATGG	1 cut(s)	609
NdeII	GATC	3 cut(s)	589, 770, 862
NlaIII	CATG	5 cut(s)	596, 613, 656, 724, 1019
NlaIV	GGNNCC	3 cut(s)	95, 272, 627
NmuCI	GTSAC	2 cut(s)	500, 1029
NspI	RCATGY	1 cut(s)	1019
OliI	CACNNNNGTG	1 cut(s)	496
PagI	TCATGA	1 cut(s)	592
PasI	CCCWGGG	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	605
PleI	GAGTC	3 cut(s)	8, 991, 1085
PpsI	GAGTC	3 cut(s)	8, 991, 1085
PshBI	ATTAAT	1 cut(s)	933
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	4 cut(s)	88, 209, 493, 1069
PspFI	CCCAGC	2 cut(s)	220, 984
PspGI	CCWGG	4 cut(s)	88, 209, 493, 1069
PspN4I	GGNNCC	3 cut(s)	95, 272, 627
PspPI	GGNCC	4 cut(s)	271, 626, 658, 710
PstI	CTGCAG	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	43
PvuII	CAGCTG	2 cut(s)	43, 790
RsaI	GTAC	3 cut(s)	458, 824, 910
RsaNI	GTAC	3 cut(s)	457, 823, 909
RseI	CAYNNNNRTG	2 cut(s)	496, 1014
SacI	GAGCTC	1 cut(s)	219
SalI	GTCGAC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	432, 933
Sau3AI	GATC	3 cut(s)	589, 770, 862
Sau96I	GGNCC	4 cut(s)	271, 626, 658, 710
SchI	GAGTC	3 cut(s)	8, 991, 1085
ScrFI	CCNGG	5 cut(s)	90, 211, 319, 495, 1071
SduI	GDGCHC	3 cut(s)	11, 29, 219
SfaNI	GCATC	1 cut(s)	624
SfcI	CTRYAG	1 cut(s)	44
SinI	GGWCC	2 cut(s)	271, 626
SmiMI	CAYNNNNRTG	2 cut(s)	496, 1014
SmlI	CTYRAG	2 cut(s)	137, 526
SmoI	CTYRAG	2 cut(s)	137, 526
SsiI	CCGC	8 cut(s)	50, 71, 97, 156, 308, 366, 713, 939
SspMI	CTAG	2 cut(s)	122, 267
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	5 cut(s)	88, 209, 317, 493, 1069
StyI	CCWWGG	2 cut(s)	266, 609
TaaI	ACNGT	2 cut(s)	630, 1043
TaiI	ACGT	2 cut(s)	189, 236
TaqI	TCGA	2 cut(s)	189, 204
TatI	WGTACW	2 cut(s)	456, 822
TauI	GCSGC	3 cut(s)	52, 311, 715
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	2 cut(s)	432, 933
Tru9I	TTAA	2 cut(s)	432, 933
TscAI	CASTG	1 cut(s)	910
TseFI	GTSAC	2 cut(s)	500, 1029
TseI	GCWGC	9 cut(s)	37, 40, 43, 46, 73, 679, 759, 790, 857
Tsp45I	GTSAC	2 cut(s)	500, 1029
TspDTI	ATGAA	4 cut(s)	129, 689, 709, 858
TspGWI	ACGGA	2 cut(s)	303, 783
TspRI	CASTG	1 cut(s)	910
VpaK11BI	GGWCC	2 cut(s)	271, 626
VspI	ATTAAT	1 cut(s)	933
XapI	RAATTY	2 cut(s)	555, 735
XceI	RCATGY	1 cut(s)	1019
XcmI	CCANNNNNNNNNTGG	2 cut(s)	822, 902
XmaJI	CCTAGG	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	2 cut(s)	122, 267
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.