FvH4_3g20700
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
13762068 .. 13763944
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20700.t1

Sequence Viewer

Length: 1035 bp
ATGGAGAGCACCGACTCGTCTTCCGGCTCGCAGCCGCCGCCGCAGCCAAACCTACCGCCGGGATTCCGCTTCCACCCCACCGATGAGGAGCTAGTCGTTCATTACCTCAAGAAAAAGGCCTCCTCGGCTCCCCTCCCAGTTGCCATCATCGCCGAAGTCGACCTCTACAAATTCGATCCATGGCAGCTCCCAGAAAAGGCGACGTTCGGAGAGCAAGAGTGGTATTTTTTCAGTCCTAGAGACCGGAAGTACCCGAACGGAGCACGGCCTAATAGAGCAGCGACTTCAGGATATTGGAAGGCGACCGGAACTGACAAGCCGGTTTTGAGTACTACTGATGAGGGAGGTGGGGGTACTCGGAAAGTTGGGGTGAAAAAAGCACTTGTTTTCTACAGAGGAAAGCCCCCAAAAGGAATCAAAACCAATTGGATCATGCATGAGTATAGGATTGCTGATAACAACACAAGTAACAAGCCACCCCCTGGGTGTCATGACTTGGGTAACAAGAAGAACTCCTTAAGGCTTGATGATTGGGTGCTTTGTCGAATTTACAAGAAGAACAACACGCATAGGCCGATGGATCTGGAGGACTCCATGGACGGCACGATGGGATCGTCGTTTCCCCTGTCGAAGCTGCACCACCTTCCCCCGAAATCGACGACATCAACCTACGGCCAATTCATGGACAACGACCATAATTTCTACGACGGGATGGTAAGCAGCGAAGGGATCAATACTAGTGCTTCTTTTCTTCCAAACTCGGCTTTGGCCAACAGCTCTCTCCCTCTAAAACGGGAACTCCCGAATCTGTACTGGAATCATGATCCGGAGGACGAAGCAGGGCCTTCAAGGAGACTACACATGGACAGCAGTGATCAGAGCACTGGAAATGGTTCTATTGCCATTCTGCTTTCTCAGCTCCCTCAGACACCTCCTCCATTGCACCAGCAGCCAATGCTGGGGACGTCACAGCTCGGTGGCGACGCTCTGTTTCGTAGTACACAGTATCAACTTCCGGGGAATTGGTATTCTTAG

Protein Analysis

345

Amino Acids

38.3

Weight (kDa)

7.78

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 150 2.5e-51 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011796)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 968
AccB7I CCANNNNNTGG 2 cut(s) 482, 682
AccI GTMKAC 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 5 cut(s) 35, 38, 41, 56, 67
AclWI GGATC 6 cut(s) 170, 437, 588, 619, 737, 818
AcoI YGGCCR 2 cut(s) 673, 768
AcsI RAATTY 2 cut(s) 170, 546
AcuI CTGAAG 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 965
AfaI GTAC 5 cut(s) 251, 331, 355, 812, 1000
AfiI CCNNNNNNNGG 6 cut(s) 58, 196, 410, 482, 682, 959
AflII CTTAAG 1 cut(s) 517
AgsI TTSAA 1 cut(s) 849
AhlI ACTAGT 1 cut(s) 737
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 6 cut(s) 91, 187, 634, 777, 919, 973
AluI AGCT 6 cut(s) 91, 187, 634, 777, 919, 973
Alw21I GWGCWC 3 cut(s) 11, 265, 884
Alw26I GTCTC 2 cut(s) 234, 847
AlwI GGATC 6 cut(s) 170, 437, 588, 619, 737, 818
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 6 cut(s) 117, 266, 572, 673, 768, 842
ApeKI GCWGC 7 cut(s) 31, 43, 184, 278, 634, 720, 949
ApoI RAATTY 2 cut(s) 170, 546
Asp700I GAANNNNTTC 1 cut(s) 892
AspS9I GGNCC 1 cut(s) 842
AsuC2I CCSGG 2 cut(s) 60, 1017
AsuHPI GGTGA 1 cut(s) 382
BalI TGGCCA 1 cut(s) 770
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 3 cut(s) 11, 265, 884
BbvI GCAGC 7 cut(s) 43, 55, 196, 290, 621, 732, 961
BccI CCATC 4 cut(s) 152, 571, 601, 706
BceAI ACGGC 3 cut(s) 281, 616, 688
BciT130I CCWGG 1 cut(s) 483
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 2 cut(s) 60, 1017
BcoDI GTCTC 2 cut(s) 234, 847
BcuI ACTAGT 1 cut(s) 737
BfaI CTAG 3 cut(s) 92, 237, 738
BfmI CTRYAG 1 cut(s) 391
BfrI CTTAAG 1 cut(s) 517
BglI GCCNNNNNGGC 1 cut(s) 125
BmcAI AGTACT 1 cut(s) 331
Bme1390I CCNGG 3 cut(s) 60, 483, 1017
BmgT120I GGNCC 1 cut(s) 842
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 3 cut(s) 60, 483, 1017
BmrI ACTGGG 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 605
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 2 cut(s) 60, 1017
BsaHI GRCGYC 1 cut(s) 965
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 6 cut(s) 123, 179, 481, 482, 594, 1016
BsaWI WCCGGW 3 cut(s) 243, 305, 826
BsaXI ACNNNNNCTCC 4 cut(s) 783, 813, 919, 949
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 196, 410, 482, 682, 959
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 3 cut(s) 137, 818, 889
Bse3DI GCAATG 1 cut(s) 938
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 6 cut(s) 123, 179, 481, 482, 594, 1016
BseGI GGATG 1 cut(s) 717
BseLI CCNNNNNNNGG 6 cut(s) 58, 196, 410, 482, 682, 959
BseMI GCAATG 1 cut(s) 938
BseMII CTCAG 2 cut(s) 929, 938
BseNI ACTGG 3 cut(s) 137, 818, 889
BseRI GAGGAG 3 cut(s) 101, 112, 924
BseXI GCAGC 7 cut(s) 43, 55, 196, 290, 621, 732, 961
BseYI CCCAGC 1 cut(s) 958
BsgI GTGCAG 1 cut(s) 620
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 6 cut(s) 119, 268, 574, 675, 770, 844
BsiEI CGRYCG 1 cut(s) 306
BsiHKAI GWGCWC 3 cut(s) 11, 265, 884
BsiSI CCGG 7 cut(s) 24, 59, 244, 306, 320, 827, 1016
BslFI GGGAC 1 cut(s) 976
BslI CCNNNNNNNGG 6 cut(s) 58, 196, 410, 482, 682, 959
BsmAI GTCTC 2 cut(s) 234, 847
BsmFI GGGAC 1 cut(s) 976
BsnI GGCC 6 cut(s) 119, 268, 574, 675, 770, 844
Bso31I GGTCTC 1 cut(s) 234
Bsp1286I GDGCHC 3 cut(s) 11, 265, 884
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 7 cut(s) 175, 429, 580, 611, 729, 823, 874
Bsp19I CCATGG 2 cut(s) 179, 594
BspACI CCGC 5 cut(s) 35, 38, 41, 56, 67
BspANI GGCC 6 cut(s) 119, 268, 574, 675, 770, 844
BspCNI CTCAG 2 cut(s) 928, 937
BspEI TCCGGA 1 cut(s) 826
BspHI TCATGA 2 cut(s) 490, 820
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 6 cut(s) 170, 437, 588, 619, 737, 818
BspTI CTTAAG 1 cut(s) 517
BspTNI GGTCTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 938
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 3 cut(s) 137, 818, 889
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 6 cut(s) 123, 179, 481, 482, 594, 1016
BssMI GATC 7 cut(s) 175, 429, 580, 611, 729, 823, 874
BssNI GRCGYC 1 cut(s) 965
BssT1I CCWWGG 2 cut(s) 179, 594
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 1005
BstACI GRCGYC 1 cut(s) 965
BstAFI CTTAAG 1 cut(s) 517
BstAPI GCANNNNNTGC 1 cut(s) 955
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 3 cut(s) 915, 924, 1032
BstDSI CCRYGG 2 cut(s) 179, 594
BstF5I GGATG 1 cut(s) 717
BstKTI GATC 7 cut(s) 178, 432, 583, 614, 732, 826, 877
BstMAI GTCTC 2 cut(s) 234, 847
BstMBI GATC 7 cut(s) 175, 429, 580, 611, 729, 823, 874
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 8 cut(s) 37, 40, 43, 125, 149, 916, 949, 955
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 3 cut(s) 58, 481, 1015
BstSFI CTRYAG 1 cut(s) 391
BstV1I GCAGC 7 cut(s) 43, 55, 196, 290, 621, 732, 961
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BsuRI GGCC 6 cut(s) 119, 268, 574, 675, 770, 844
BtgI CCRYGG 2 cut(s) 179, 594
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 717
BtsI GCAGTG 1 cut(s) 877
BtsIMutI CAGTG 2 cut(s) 877, 882
Cac8I GCNNGC 1 cut(s) 29
CciI TCATGA 2 cut(s) 490, 820
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 842
CseI GACGC 1 cut(s) 992
Csp6I GTAC 5 cut(s) 250, 330, 354, 811, 999
CviAII CATG 8 cut(s) 180, 433, 437, 491, 595, 682, 821, 862
CviQI GTAC 5 cut(s) 250, 330, 354, 811, 999
DdeI CTNAG 3 cut(s) 915, 924, 1032
DpnI GATC 7 cut(s) 177, 431, 582, 613, 731, 825, 876
DpnII GATC 7 cut(s) 175, 429, 580, 611, 729, 823, 874
EaeI YGGCCR 2 cut(s) 673, 768
Eco130I CCWWGG 2 cut(s) 179, 594
Eco147I AGGCCT 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 842
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 179, 594
EcoT22I ATGCAT 1 cut(s) 438
ErhI CCWWGG 2 cut(s) 179, 594
FaeI CATG 8 cut(s) 183, 436, 440, 494, 598, 685, 824, 865
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FaqI GGGAC 1 cut(s) 976
FatI CATG 8 cut(s) 179, 432, 436, 490, 594, 681, 820, 861
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 1 cut(s) 159
FokI GGATG 1 cut(s) 724
FspBI CTAG 3 cut(s) 92, 237, 738
GsaI CCCAGC 1 cut(s) 962
GsuI CTGGAG 1 cut(s) 605
HaeIII GGCC 6 cut(s) 119, 268, 574, 675, 770, 844
HapII CCGG 7 cut(s) 24, 59, 244, 306, 320, 827, 1016
HgaI GACGC 1 cut(s) 992
Hin1I GRCGYC 1 cut(s) 965
Hin1II CATG 8 cut(s) 183, 436, 440, 494, 598, 685, 824, 865
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 6 cut(s) 14, 63, 414, 590, 805, 817
HpaII CCGG 7 cut(s) 24, 59, 244, 306, 320, 827, 1016
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 160, 1001
Hpy188I TCNGA 4 cut(s) 209, 360, 879, 927
Hpy188III TCNNGA 7 cut(s) 109, 288, 491, 584, 802, 821, 827
Hpy8I GTNNAC 2 cut(s) 160, 1001
Hpy99I CGWCG 5 cut(s) 205, 619, 661, 710, 986
HpyAV CCTTC 4 cut(s) 292, 653, 719, 855
HpyCH4III ACNGT 1 cut(s) 1005
HpyCH4IV ACGT 2 cut(s) 203, 965
HpyCH4V TGCA 3 cut(s) 436, 637, 943
HpyF10VI GCNNNNNNNGC 8 cut(s) 37, 40, 43, 125, 149, 916, 949, 955
HpyF3I CTNAG 3 cut(s) 915, 924, 1032
HpySE526I ACGT 2 cut(s) 203, 965
Hsp92I GRCGYC 1 cut(s) 965
Hsp92II CATG 8 cut(s) 183, 436, 440, 494, 598, 685, 824, 865
Kpn2I TCCGGA 1 cut(s) 826
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 7 cut(s) 175, 429, 580, 611, 729, 823, 874
LmnI GCTCC 5 cut(s) 88, 133, 192, 260, 924
Lsp1109I GCAGC 7 cut(s) 43, 55, 196, 290, 621, 732, 961
MaeI CTAG 3 cut(s) 92, 237, 738
MaeII ACGT 2 cut(s) 203, 965
MaeIII GTNAC 3 cut(s) 467, 500, 966
MalI GATC 7 cut(s) 177, 431, 582, 613, 731, 825, 876
MboI GATC 7 cut(s) 175, 429, 580, 611, 729, 823, 874
MboII GAAGA 4 cut(s) 12, 520, 568, 743
MfeI CAATTG 1 cut(s) 424
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 3 cut(s) 11, 265, 884
MlsI TGGCCA 1 cut(s) 770
MluCI AATT 6 cut(s) 170, 424, 546, 677, 697, 1021
MluNI TGGCCA 1 cut(s) 770
MlyI GAGTC 2 cut(s) 8, 584
Mox20I TGGCCA 1 cut(s) 770
Mph1103I ATGCAT 1 cut(s) 438
MroI TCCGGA 1 cut(s) 826
MroXI GAANNNNTTC 1 cut(s) 892
MscI TGGCCA 1 cut(s) 770
MseI TTAA 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 770
MspCI CTTAAG 1 cut(s) 517
MspI CCGG 7 cut(s) 24, 59, 244, 306, 320, 827, 1016
MspR9I CCNGG 3 cut(s) 60, 483, 1017
MunI CAATTG 1 cut(s) 424
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 8 cut(s) 37, 40, 43, 125, 149, 916, 949, 955
NciI CCSGG 2 cut(s) 60, 1017
NcoI CCATGG 2 cut(s) 179, 594
NdeII GATC 7 cut(s) 175, 429, 580, 611, 729, 823, 874
NlaIII CATG 8 cut(s) 183, 436, 440, 494, 598, 685, 824, 865
NlaIV GGNNCC 1 cut(s) 129
NmeAIII GCCGAG 2 cut(s) 104, 740
NmuCI GTSAC 1 cut(s) 966
NsiI ATGCAT 1 cut(s) 438
PagI TCATGA 2 cut(s) 490, 820
PasI CCCWGGG 1 cut(s) 482
PceI AGGCCT 1 cut(s) 119
PcsI WCGNNNNNNNCGW 3 cut(s) 156, 572, 611
PdmI GAANNNNTTC 1 cut(s) 892
PfeI GAWTC 4 cut(s) 63, 414, 805, 817
PflMI CCANNNNNTGG 2 cut(s) 482, 682
PleI GAGTC 2 cut(s) 8, 584
PpsI GAGTC 2 cut(s) 8, 584
Psp6I CCWGG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 958
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 842
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 5 cut(s) 251, 331, 355, 812, 1000
RsaNI GTAC 5 cut(s) 250, 330, 354, 811, 999
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 518
Sau3AI GATC 7 cut(s) 175, 429, 580, 611, 729, 823, 874
Sau96I GGNCC 1 cut(s) 842
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 2 cut(s) 8, 584
ScrFI CCNGG 3 cut(s) 60, 483, 1017
SduI GDGCHC 3 cut(s) 11, 265, 884
SfcI CTRYAG 1 cut(s) 391
SmlI CTYRAG 2 cut(s) 107, 517
SmoI CTYRAG 2 cut(s) 107, 517
SpeI ACTAGT 1 cut(s) 737
Sse9I AATT 6 cut(s) 170, 424, 546, 677, 697, 1021
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 5 cut(s) 35, 38, 41, 56, 67
SspMI CTAG 3 cut(s) 92, 237, 738
StuI AGGCCT 1 cut(s) 119
StyD4I CCNGG 3 cut(s) 58, 481, 1015
StyI CCWWGG 2 cut(s) 179, 594
TaaI ACNGT 1 cut(s) 1005
TaiI ACGT 2 cut(s) 206, 968
TaqI TCGA 5 cut(s) 159, 174, 544, 629, 656
TasI AATT 6 cut(s) 170, 424, 546, 677, 697, 1021
TatI WGTACW 3 cut(s) 329, 810, 998
TauI GCSGC 3 cut(s) 37, 40, 43
TfiI GAWTC 4 cut(s) 63, 414, 805, 817
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 2 cut(s) 877, 889
TseFI GTSAC 1 cut(s) 966
TseI GCWGC 7 cut(s) 31, 43, 184, 278, 634, 720, 949
Tsp45I GTSAC 1 cut(s) 966
TspDTI ATGAA 2 cut(s) 89, 670
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 2 cut(s) 877, 889
Van91I CCANNNNNTGG 2 cut(s) 482, 682
Vha464I CTTAAG 1 cut(s) 517
XapI RAATTY 2 cut(s) 170, 546
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 892
XspI CTAG 3 cut(s) 92, 237, 738
ZraI GACGTC 1 cut(s) 966
ZrmI AGTACT 1 cut(s) 331
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.