AT3G15510
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
5243432 .. 5245510
2079 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15510.1

Sequence Viewer

Length: 1095 bp
ATGGAGAGCACCGATTCTTCCGGTGGTCCACCACCGCCACAACCTAACCTTCCTCCAGGCTTCCGGTTTCACCCTACCGACGAAGAGCTTGTTGTTCACTACCTCAAACGCAAAGCAGCCTCTGCTCCTTTACCTGTCGCCATCATCGCCGAAGTCGATCTCTATAAATTTGATCCATGGGAACTTCCCGCTAAAGCATCGTTTGGAGAACAAGAATGGTACTTCTTTAGTCCACGAGATCGGAAGTATCCAAACGGAGCAAGACCAAACAGAGCGGCGACTTCAGGTTATTGGAAAGCGACCGGTACAGATAAACCGGTACTTGCTTCCGACGGTAACCAAAAGGTGGGCGTGAAGAAGGCACTAGTCTTCTACAGTGGTAAACCACCAAAAGGCGTTAAAAGTGATTGGATCATGCATGAGTATCGTCTCATCGAAAACAAACCAAACAATCGACCTCCTGGCTGTGATTTCGGCAACAAAAAAAACTCACTCAGACTTGATGATTGGGTGTTATGTAGAATCTACAAGAAGAACAACGCAAGTCGACATGTTGATAACGATAAGGATCATGATATGATCGATTACATTTTCAGGAAGATTCCTCCGTCTTTATCAATGGCGGCTGCTTCTACAGGACTTCACCAACATCATCATAATGTCTCAAGATCAATGAATTTCTTCCCTGGCAAATTCTCCGGTGGTGGTTACGGGATTTTCTCTGACGGTGGTAACACGAGTATATACGACGGCGGTGGCATGATCAACAATATTGGTACTGACTCAGTAGATCACGACAATAACGCTGACGTCGTTGGTTTAAATCATGCTTCGTCGTCAGGTCCTATGATGATGGCGAATTTGAAACGAACTCTCCCGGTGCCGTATTGGCCTGTAGCAGATGAGGAGCAAGATGCATCTCCGAGCAAACGGTTTCACGGTGTAGGAGGAGGAGGAGGAGATTGTTCGAACATGTCTTCCTCCATGATGGAAGAGACTCCACCATTGATGCAACAACAAGGTGGTGTGTTAGGAGATGGATTATTCAGAACGACATCGTACCAATTACCCGGTTTAAATTGGTACTCTTCTTAA

Protein Analysis

364

Amino Acids

40.03

Weight (kDa)

7.2

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 144 1.2e-51 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011796)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 813
AccB1I GGYRCC 1 cut(s) 880
AccB7I CCANNNNNTGG 1 cut(s) 346
AccBSI CCGCTC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 547
AciI CCGC 5 cut(s) 35, 189, 275, 623, 753
AclWI GGATC 3 cut(s) 167, 419, 576
AcsI RAATTY 4 cut(s) 167, 676, 692, 859
AcuI CTGAAG 1 cut(s) 267
AcyI GRCGYC 1 cut(s) 810
AfaI GTAC 6 cut(s) 221, 307, 321, 778, 1061, 1085
AfiI CCNNNNNNNGG 2 cut(s) 346, 392
AflIII ACRYGT 2 cut(s) 550, 972
AgeI ACCGGT 2 cut(s) 302, 316
AgsI TTSAA 1 cut(s) 865
AhlI ACTAGT 1 cut(s) 364
AjnI CCWGG 3 cut(s) 55, 460, 685
AloI GAACNNNNNNTCC 2 cut(s) 962, 994
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 3 cut(s) 434, 667, 989
AlwI GGATC 3 cut(s) 167, 419, 576
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 890
ApeKI GCWGC 2 cut(s) 116, 626
ApoI RAATTY 4 cut(s) 167, 676, 692, 859
AsiGI ACCGGT 2 cut(s) 302, 316
Asp700I GAANNNNTTC 1 cut(s) 680
AspS9I GGNCC 2 cut(s) 26, 842
AsuC2I CCSGG 2 cut(s) 878, 1071
AsuHPI GGTGA 2 cut(s) 62, 635
AsuII TTCGAA 1 cut(s) 968
AvaII GGWCC 2 cut(s) 26, 842
BanI GGYRCC 1 cut(s) 880
BauI CACGAG 2 cut(s) 234, 736
BbsI GAAGAC 2 cut(s) 361, 969
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 128, 613
BccI CCATC 4 cut(s) 149, 847, 982, 1031
BceAI ACGGC 2 cut(s) 766, 868
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciT130I CCWGG 3 cut(s) 57, 462, 687
BciVI GTATCC 1 cut(s) 258
BclI TGATCA 1 cut(s) 762
BcnI CCSGG 2 cut(s) 878, 1071
BcoDI GTCTC 3 cut(s) 434, 667, 989
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 3 cut(s) 373, 633, 894
BfuI GTATCC 1 cut(s) 258
BglI GCCNNNNNGGC 1 cut(s) 889
BisI GCNGC 4 cut(s) 117, 276, 624, 627
BlsI GCNGC 4 cut(s) 118, 277, 625, 628
Bme1390I CCNGG 5 cut(s) 57, 462, 687, 878, 1071
Bme18I GGWCC 2 cut(s) 26, 842
BmgT120I GGNCC 2 cut(s) 26, 842
BmiI GGNNCC 1 cut(s) 882
BmrFI CCNGG 5 cut(s) 57, 462, 687, 878, 1071
BmsI GCATC 4 cut(s) 206, 904, 926, 999
BpiI GAAGAC 2 cut(s) 361, 969
BpmI CTGGAG 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 968
BpuEI CTTGAG 1 cut(s) 649
BpuMI CCSGG 2 cut(s) 878, 1071
Bsa29I ATCGAT 1 cut(s) 582
BsaBI GATNNNNATC 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 810
BsaJI CCNNGG 2 cut(s) 176, 685
BsaWI WCCGGW 5 cut(s) 20, 63, 302, 316, 698
BsaXI ACNNNNNCTCC 2 cut(s) 858, 888
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 392
Bse118I RCCGGY 2 cut(s) 302, 316
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 3 cut(s) 57, 462, 687
BseCI ATCGAT 1 cut(s) 582
BseDI CCNNGG 2 cut(s) 176, 685
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 2 cut(s) 346, 392
BseMII CTCAG 2 cut(s) 508, 798
BseRI GAGGAG 5 cut(s) 920, 963, 966, 969, 972
BseXI GCAGC 2 cut(s) 128, 613
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 1 cut(s) 892
BshNI GGYRCC 1 cut(s) 880
BshTI ACCGGT 2 cut(s) 302, 316
BshVI ATCGAT 1 cut(s) 582
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 7 cut(s) 21, 64, 303, 317, 699, 878, 1071
BslI CCNNNNNNNGG 2 cut(s) 346, 392
BsmAI GTCTC 3 cut(s) 434, 667, 989
BsmBI CGTCTC 1 cut(s) 434
BsnI GGCC 1 cut(s) 892
Bsp119I TTCGAA 1 cut(s) 968
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 9 cut(s) 157, 172, 238, 411, 568, 579, 668, 762, 790
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 5 cut(s) 35, 189, 275, 623, 753
BspANI GGCC 1 cut(s) 892
BspCNI CTCAG 2 cut(s) 507, 797
BspDI ATCGAT 1 cut(s) 582
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 882
BspPI GGATC 3 cut(s) 167, 419, 576
BspQI GCTCTTC 1 cut(s) 78
BspT104I TTCGAA 1 cut(s) 968
BspT107I GGYRCC 1 cut(s) 880
BsrBI CCGCTC 1 cut(s) 275
BsrFI RCCGGY 2 cut(s) 302, 316
BssAI RCCGGY 2 cut(s) 302, 316
BssECI CCNNGG 2 cut(s) 176, 685
BssMI GATC 9 cut(s) 157, 172, 238, 411, 568, 579, 668, 762, 790
BssNI GRCGYC 1 cut(s) 810
BssSI CACGAG 2 cut(s) 234, 736
BssT1I CCWWGG 1 cut(s) 176
Bst2BI CACGAG 2 cut(s) 234, 736
Bst2UI CCWGG 3 cut(s) 57, 462, 687
Bst4CI ACNGT 5 cut(s) 335, 377, 728, 933, 941
Bst6I CTCTTC 2 cut(s) 78, 987
BstACI GRCGYC 1 cut(s) 810
BstAPI GCANNNNNTGC 1 cut(s) 122
BstBI TTCGAA 1 cut(s) 968
BstDEI CTNAG 2 cut(s) 494, 784
BstDSI CCRYGG 1 cut(s) 176
BstEII GGTNACC 1 cut(s) 335
BstKTI GATC 9 cut(s) 160, 175, 241, 414, 571, 582, 671, 765, 793
BstMAI GTCTC 3 cut(s) 434, 667, 989
BstMBI GATC 9 cut(s) 157, 172, 238, 411, 568, 579, 668, 762, 790
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 3 cut(s) 122, 146, 889
BstNI CCWGG 3 cut(s) 57, 462, 687
BstNSI RCATGY 2 cut(s) 554, 976
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 5 cut(s) 55, 460, 685, 876, 1069
BstSFI CTRYAG 3 cut(s) 373, 633, 894
BstV1I GCAGC 2 cut(s) 128, 613
BstV2I GAAGAC 2 cut(s) 361, 969
Bsu15I ATCGAT 1 cut(s) 582
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 892
BsuTUI ATCGAT 1 cut(s) 582
BtgI CCRYGG 1 cut(s) 176
BtgZI GCGATG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 382
CaiI CAGNNNCTG 1 cut(s) 122
CciI TCATGA 1 cut(s) 571
Cfr10I RCCGGY 2 cut(s) 302, 316
Cfr13I GGNCC 2 cut(s) 26, 842
ClaI ATCGAT 1 cut(s) 582
Csp6I GTAC 6 cut(s) 220, 306, 320, 777, 1060, 1084
CspAI ACCGGT 2 cut(s) 302, 316
CviAII CATG 9 cut(s) 177, 415, 419, 551, 572, 760, 827, 973, 985
CviJI RGCY 6 cut(s) 60, 88, 119, 465, 626, 892
CviKI_1 RGCY 6 cut(s) 60, 88, 119, 465, 626, 892
CviQI GTAC 6 cut(s) 220, 306, 320, 777, 1060, 1084
DdeI CTNAG 2 cut(s) 494, 784
DpnI GATC 9 cut(s) 159, 174, 240, 413, 570, 581, 670, 764, 792
DpnII GATC 9 cut(s) 157, 172, 238, 411, 568, 579, 668, 762, 790
DraI TTTAAA 2 cut(s) 822, 1077
Eam1104I CTCTTC 2 cut(s) 78, 987
EarI CTCTTC 2 cut(s) 78, 987
Eco130I CCWWGG 1 cut(s) 176
Eco47I GGWCC 2 cut(s) 26, 842
Eco57I CTGAAG 1 cut(s) 267
Eco91I GGTNACC 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 842
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 55, 460, 685
EcoT14I CCWWGG 1 cut(s) 176
EcoT22I ATGCAT 2 cut(s) 420, 919
ErhI CCWWGG 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 9 cut(s) 180, 418, 422, 554, 575, 763, 830, 976, 988
FatI CATG 9 cut(s) 176, 414, 418, 550, 571, 759, 826, 972, 984
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 1 cut(s) 762
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 4 cut(s) 117, 276, 624, 627
Fsp4HI GCNGC 4 cut(s) 117, 276, 624, 627
FspBI CTAG 1 cut(s) 365
GluI GCNGC 4 cut(s) 117, 276, 624, 627
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 892
HapII CCGG 7 cut(s) 21, 64, 303, 317, 699, 878, 1071
Hin1I GRCGYC 1 cut(s) 810
Hin1II CATG 9 cut(s) 180, 418, 422, 554, 575, 763, 830, 976, 988
HincII GTYRAC 1 cut(s) 548
HindII GTYRAC 1 cut(s) 548
HinfI GANTC 5 cut(s) 14, 522, 601, 782, 997
HpaII CCGG 7 cut(s) 21, 64, 303, 317, 699, 878, 1071
HphI GGTGA 2 cut(s) 62, 635
Hpy166II GTNNAC 5 cut(s) 29, 97, 233, 383, 548
Hpy188I TCNGA 6 cut(s) 243, 331, 497, 724, 924, 1049
Hpy188III TCNNGA 4 cut(s) 572, 595, 666, 794
Hpy8I GTNNAC 5 cut(s) 29, 97, 233, 383, 548
Hpy99I CGWCG 5 cut(s) 83, 335, 752, 815, 838
HpyAV CCTTC 2 cut(s) 59, 352
HpyCH4III ACNGT 5 cut(s) 335, 377, 728, 933, 941
HpyCH4IV ACGT 1 cut(s) 810
HpyCH4V TGCA 3 cut(s) 418, 917, 1012
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 146, 889
HpyF3I CTNAG 2 cut(s) 494, 784
HpySE526I ACGT 1 cut(s) 810
Hsp92I GRCGYC 1 cut(s) 810
Hsp92II CATG 9 cut(s) 180, 418, 422, 554, 575, 763, 830, 976, 988
Ksp22I TGATCA 1 cut(s) 762
Kzo9I GATC 9 cut(s) 157, 172, 238, 411, 568, 579, 668, 762, 790
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 3 cut(s) 130, 257, 907
Lsp1109I GCAGC 2 cut(s) 128, 613
LweI GCATC 4 cut(s) 206, 904, 926, 999
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 810
MaeIII GTNAC 3 cut(s) 335, 707, 731
MalI GATC 9 cut(s) 159, 174, 240, 413, 570, 581, 670, 764, 792
MbiI CCGCTC 1 cut(s) 275
MboI GATC 9 cut(s) 157, 172, 238, 411, 568, 579, 668, 762, 790
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 6 cut(s) 167, 676, 692, 859, 1064, 1078
MlyI GAGTC 2 cut(s) 776, 991
MmeI TCCRAC 1 cut(s) 354
Mph1103I ATGCAT 2 cut(s) 420, 919
MroXI GAANNNNTTC 1 cut(s) 680
MseI TTAA 4 cut(s) 399, 821, 1076, 1093
MslI CAYNNNNRTG 1 cut(s) 657
MspI CCGG 7 cut(s) 21, 64, 303, 317, 699, 878, 1071
MspR9I CCNGG 5 cut(s) 57, 462, 687, 878, 1071
MvaI CCWGG 3 cut(s) 57, 462, 687
MwoI GCNNNNNNNGC 3 cut(s) 122, 146, 889
NciI CCSGG 2 cut(s) 878, 1071
NcoI CCATGG 1 cut(s) 176
NdeII GATC 9 cut(s) 157, 172, 238, 411, 568, 579, 668, 762, 790
NlaIII CATG 9 cut(s) 180, 418, 422, 554, 575, 763, 830, 976, 988
NlaIV GGNNCC 1 cut(s) 882
NsiI ATGCAT 2 cut(s) 420, 919
NspI RCATGY 2 cut(s) 554, 976
NspV TTCGAA 1 cut(s) 968
PagI TCATGA 1 cut(s) 571
PciI ACATGT 2 cut(s) 550, 972
PciSI GCTCTTC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 810
PdmI GAANNNNTTC 1 cut(s) 680
PfeI GAWTC 3 cut(s) 14, 522, 601
PflMI CCANNNNNTGG 1 cut(s) 346
PinAI ACCGGT 2 cut(s) 302, 316
PkrI GCNGC 4 cut(s) 118, 277, 625, 628
PleI GAGTC 2 cut(s) 776, 991
PpsI GAGTC 2 cut(s) 776, 991
PpuMI RGGWCCY 1 cut(s) 842
PscI ACATGT 2 cut(s) 550, 972
Psp5II RGGWCCY 1 cut(s) 842
Psp6I CCWGG 3 cut(s) 55, 460, 685
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 3 cut(s) 55, 460, 685
PspN4I GGNNCC 1 cut(s) 882
PspPI GGNCC 2 cut(s) 26, 842
PspPPI RGGWCCY 1 cut(s) 842
PstNI CAGNNNCTG 1 cut(s) 122
RsaI GTAC 6 cut(s) 221, 307, 321, 778, 1061, 1085
RsaNI GTAC 6 cut(s) 220, 306, 320, 777, 1060, 1084
RseI CAYNNNNRTG 1 cut(s) 657
SalI GTCGAC 1 cut(s) 546
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 4 cut(s) 399, 821, 1076, 1093
SatI GCNGC 4 cut(s) 117, 276, 624, 627
Sau3AI GATC 9 cut(s) 157, 172, 238, 411, 568, 579, 668, 762, 790
Sau96I GGNCC 2 cut(s) 26, 842
SchI GAGTC 2 cut(s) 776, 991
ScrFI CCNGG 5 cut(s) 57, 462, 687, 878, 1071
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 4 cut(s) 206, 904, 926, 999
SfcI CTRYAG 3 cut(s) 373, 633, 894
SfuI TTCGAA 1 cut(s) 968
SinI GGWCC 2 cut(s) 26, 842
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 1 cut(s) 664
SmoI CTYRAG 1 cut(s) 664
SpeI ACTAGT 1 cut(s) 364
Sse9I AATT 6 cut(s) 167, 676, 692, 859, 1064, 1078
SsiI CCGC 5 cut(s) 35, 189, 275, 623, 753
SspI AATATT 1 cut(s) 772
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 5 cut(s) 55, 460, 685, 876, 1069
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 5 cut(s) 335, 377, 728, 933, 941
TaiI ACGT 1 cut(s) 813
TaqI TCGA 6 cut(s) 156, 435, 454, 547, 582, 968
TasI AATT 6 cut(s) 167, 676, 692, 859, 1064, 1078
TauI GCSGC 2 cut(s) 278, 626
TfiI GAWTC 3 cut(s) 14, 522, 601
Tru1I TTAA 4 cut(s) 399, 821, 1076, 1093
Tru9I TTAA 4 cut(s) 399, 821, 1076, 1093
TscAI CASTG 1 cut(s) 382
TseI GCWGC 2 cut(s) 116, 626
TspDTI ATGAA 1 cut(s) 689
TspGWI ACGGA 2 cut(s) 270, 597
TspRI CASTG 1 cut(s) 382
Van91I CCANNNNNTGG 1 cut(s) 346
VpaK11BI GGWCC 2 cut(s) 26, 842
XapI RAATTY 4 cut(s) 167, 676, 692, 859
XceI RCATGY 2 cut(s) 554, 976
XmiI GTMKAC 1 cut(s) 547
XmnI GAANNNNTTC 1 cut(s) 680
XspI CTAG 1 cut(s) 365
ZraI GACGTC 1 cut(s) 811
Zsp2I ATGCAT 2 cut(s) 420, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.