Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010945

Physical Location & Seq

Genomic Coordinates Reverse (-)

19854615 .. 19857146

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTTCAGATCTATGCTCGTCCGATCTTCTGCCTCCGCGAAGCAGGCGGTTATCCGCCGTAGCTTCTCCTCCGGCTCCGTCCCCGAGCGTAAAGTCGCCATCCTTGGTGCCGCCGGTGGAATTGGTCAGCCTCTTGCTCTCCTCATGAAGCTTAATCCTCTTGTCTCTTCCCTCTCCCTCTACGATATCGCTAACACTCCTGGAGTTGCTGCTGATGTTGGTCACATCAACACCAGATCTGAGGTTGTTGGATACATGGGCGATGATAACTTGGCCAAAGCTCTTGAAGGAGCTGATCTCGTTATCATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCTTTTCAACATTAATGCTGGAATTGTCAAGAACCTTTGCACTGCCATCGCCAAGTACTGCCCACATGCGCTTATTAATATGATCAGCAACCCTGTGAACTCTACTGTTCCAATTGCAGCTGAGATATTTAAGAAGGCTGGTATGTACGATGAAAAGAAATTGTTTGGTGTTACCACTCTTGACGTCGTCAGGGCCAGGACTTTCTATGCTGGAAAGGCAAATGTCCCAGTTGCAGAAGTTAATGTTCCGGTGATTGGTGGTCATGCTGGGGTTACTATTCTCCCTCTCTTCTCTCAGGCAACTCCTCAAGCCAACTTGTCAAGTGACATACTTACCGCCCTTACTAAGCGTACCCAAGATGGAGGTACAGAAGTCGTGGAGGCAAAAGCAGGAAAAGGTTCAGCTACATTGTCCATGGCCTATGCCGGAGCATTGTTCGCTGATGCATGCTTGAAAGGACTCAACGGTGTTCCAGATGTCATAGAATGCTCATACGTGCAATCTACAATCACCGAGCTTCCTTTCTTTGCCTCGAAGGTGAGGTTGGGGAAGAATGGTGTGGAGGAGGTTCTTGACTTGGGACCACTCTCAGACTTTGAGAAGGAAGGCTTGGAAGCATTGAAGCCAGAACTCAAGTCCTCCATAGAAAAGGGAGTCAAGTTTGCCAACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0030060 GO:0030312 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

341

Amino Acids

35.8

Weight (kDa)

8.54

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	31 - 173	4.4e-47	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	175 - 338	2.8e-51	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53240 AT3G15020 AT3G15020
fragaria_vesca	FvH4_3g18670
malus_domestica	MD03G1240100.v1.1 MD11G1259400.v1.1
prunus_persica	Prupe.4G058400_v2.0.a1 Prupe.4G170500_v2.0.a1
pyrus_communis	pycom03g18530 pycom11g22920
rosa_chinensis	RchiOBHm_Chr5g0031491
rosa_laevigata	RLG00000033315
rosa_multiflora	Rmu_sc0006344.1_g000010
rosa_roxburghii	Rroxscaffold_1G00048830
rosa_rugosa	Rorug05G0126300
rosa_samantha	Rh5AG219200 Rh5BG218600 Rh5CG242200 Rh5DG224100
rosa_wichuraiana	Rw5G019990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	107
AccII	CGCG	1 cut(s)	38
AciI	CCGC	5 cut(s)	36, 47, 55, 111, 687
AcoI	YGGCCR	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	534
AfaI	GTAC	5 cut(s)	321, 407, 497, 703, 718
AfiI	CCNNNNNNNGG	1 cut(s)	605
AgsI	TTSAA	4 cut(s)	287, 358, 805, 973
AjnI	CCWGG	3 cut(s)	199, 331, 545
AjuI	GAANNNNNNNTTGG	4 cut(s)	878, 910, 944, 976
AluBI	AGCT	8 cut(s)	63, 151, 281, 293, 314, 470, 755, 868
AluI	AGCT	8 cut(s)	63, 151, 281, 293, 314, 470, 755, 868
Alw26I	GTCTC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	3 cut(s)	273, 543, 768
ApeKI	GCWGC	2 cut(s)	209, 467
AseI	ATTAAT	2 cut(s)	363, 426
Asp700I	GAANNNNTTC	1 cut(s)	748
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	543, 932
AsuHPI	GGTGA	3 cut(s)	613, 853, 901
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	932
BaeI	ACNNNNGTAYC	2 cut(s)	708, 741
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	196, 479
BccI	CCATC	3 cut(s)	107, 404, 704
BceAI	ACGGC	1 cut(s)	42
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciT130I	CCWGG	3 cut(s)	201, 333, 547
BciVI	GTATCC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	245
BglII	AGATCT	2 cut(s)	8, 236
BisI	GCNGC	3 cut(s)	111, 210, 468
BlsI	GCNGC	3 cut(s)	112, 211, 469
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	3 cut(s)	201, 333, 547
Bme18I	GGWCC	1 cut(s)	932
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	543, 932
BmiI	GGNNCC	3 cut(s)	76, 109, 933
BmrFI	CCNGG	3 cut(s)	201, 333, 547
BmrI	ACTGGG	1 cut(s)	572
BmsI	GCATC	1 cut(s)	784
BmuI	ACTGGG	1 cut(s)	572
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
BpmI	CTGGAG	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	642, 968
BsaAI	YACGTR	1 cut(s)	847
BsaHI	GRCGYC	1 cut(s)	534
BsaJI	CCNNGG	3 cut(s)	103, 323, 765
BsaWI	WCCGGW	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	578, 1021
BseBI	CCWGG	3 cut(s)	201, 333, 547
BseDI	CCNNGG	3 cut(s)	103, 323, 765
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMII	CTCAG	4 cut(s)	231, 462, 659, 954
BseNI	ACTGG	2 cut(s)	578, 1021
BseRI	GAGGAG	4 cut(s)	58, 131, 645, 929
BseXI	GCAGC	2 cut(s)	196, 479
BseYI	CCCAGC	1 cut(s)	617
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	275, 545, 770
BshNI	GGYRCC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	4 cut(s)	72, 114, 599, 777
BslFI	GGGAC	3 cut(s)	65, 560, 945
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	3 cut(s)	65, 560, 945
BsmI	GAATGC	1 cut(s)	842
BsnI	GGCC	3 cut(s)	275, 545, 770
BsoBI	CYCGRG	1 cut(s)	83
Bsp143I	GATC	6 cut(s)	8, 23, 236, 295, 349, 432
Bsp19I	CCATGG	1 cut(s)	765
BspACI	CCGC	5 cut(s)	36, 47, 55, 111, 687
BspANI	GGCC	3 cut(s)	275, 545, 770
BspCNI	CTCAG	4 cut(s)	232, 463, 658, 953
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	3 cut(s)	76, 109, 933
BspT107I	GGYRCC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	578, 1021
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	3 cut(s)	103, 323, 765
BssMI	GATC	6 cut(s)	8, 23, 236, 295, 349, 432
BssNI	GRCGYC	1 cut(s)	534
BssT1I	CCWWGG	3 cut(s)	103, 323, 765
Bst2UI	CCWGG	3 cut(s)	201, 333, 547
Bst4CI	ACNGT	2 cut(s)	457, 818
Bst6I	CTCTTC	2 cut(s)	172, 644
BstACI	GRCGYC	1 cut(s)	534
BstBAI	YACGTR	1 cut(s)	847
BstC8I	GCNNGC	2 cut(s)	45, 799
BstDEI	CTNAG	5 cut(s)	240, 471, 645, 696, 940
BstDSI	CCRYGG	1 cut(s)	765
BstF5I	GGATG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	6 cut(s)	11, 26, 239, 298, 352, 435
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	6 cut(s)	8, 23, 236, 295, 349, 432
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 566, 788
BstNI	CCWGG	3 cut(s)	201, 333, 547
BstNSI	RCATGY	2 cut(s)	419, 801
BstSCI	CCNGG	3 cut(s)	199, 331, 545
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	196, 479
BstX2I	RGATCY	2 cut(s)	8, 236
BstYI	RGATCY	2 cut(s)	8, 236
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	3 cut(s)	275, 545, 770
BtgI	CCRYGG	1 cut(s)	765
BtgZI	GCGATG	2 cut(s)	276, 382
BtsCI	GGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	45, 799
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	543, 932
Csp6I	GTAC	5 cut(s)	320, 406, 496, 702, 717
CviAII	CATG	6 cut(s)	145, 256, 416, 614, 766, 798
CviQI	GTAC	5 cut(s)	320, 406, 496, 702, 717
DdeI	CTNAG	5 cut(s)	240, 471, 645, 696, 940
DpnI	GATC	6 cut(s)	10, 25, 238, 297, 351, 434
DpnII	GATC	6 cut(s)	8, 23, 236, 295, 349, 432
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	172, 644
EarI	CTCTTC	2 cut(s)	172, 644
EciI	GGCGGA	1 cut(s)	44
Eco130I	CCWWGG	3 cut(s)	103, 323, 765
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	932
Eco88I	CYCGRG	1 cut(s)	83
EcoRII	CCWGG	3 cut(s)	199, 331, 545
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	3 cut(s)	103, 323, 765
EcoT22I	ATGCAT	1 cut(s)	799
ErhI	CCWWGG	3 cut(s)	103, 323, 765
FaeI	CATG	6 cut(s)	148, 259, 419, 617, 769, 801
FalI	AAGNNNNNCTT	2 cut(s)	944, 976
FaqI	GGGAC	3 cut(s)	65, 560, 945
FatI	CATG	6 cut(s)	144, 255, 415, 613, 765, 797
FbaI	TGATCA	1 cut(s)	432
Fnu4HI	GCNGC	3 cut(s)	111, 210, 468
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	3 cut(s)	111, 210, 468
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	3 cut(s)	111, 210, 468
GsaI	CCCAGC	1 cut(s)	621
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	3 cut(s)	275, 545, 770
HapII	CCGG	4 cut(s)	72, 114, 599, 777
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	534
Hin1II	CATG	6 cut(s)	148, 259, 419, 617, 769, 801
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	810, 1005
HpaII	CCGG	4 cut(s)	72, 114, 599, 777
HphI	GGTGA	3 cut(s)	613, 853, 901
Hpy166II	GTNNAC	2 cut(s)	320, 448
Hpy188I	TCNGA	4 cut(s)	8, 23, 241, 943
Hpy188III	TCNNGA	6 cut(s)	145, 284, 379, 530, 824, 923
Hpy8I	GTNNAC	2 cut(s)	320, 448
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	5 cut(s)	281, 478, 880, 946, 950
HpyCH4III	ACNGT	2 cut(s)	457, 818
HpyCH4IV	ACGT	2 cut(s)	534, 846
HpyCH4V	TGCA	5 cut(s)	390, 467, 584, 797, 850
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 566, 788
HpyF3I	CTNAG	5 cut(s)	240, 471, 645, 696, 940
HpySE526I	ACGT	2 cut(s)	534, 846
Hsp92I	GRCGYC	1 cut(s)	534
Hsp92II	CATG	6 cut(s)	148, 259, 419, 617, 769, 801
HspAI	GCGC	1 cut(s)	419
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	6 cut(s)	8, 23, 236, 295, 349, 432
LmnI	GCTCC	3 cut(s)	80, 290, 779
Lsp1109I	GCAGC	2 cut(s)	196, 479
LweI	GCATC	1 cut(s)	784
MaeII	ACGT	2 cut(s)	534, 846
MaeIII	GTNAC	5 cut(s)	221, 344, 520, 622, 674
MalI	GATC	6 cut(s)	10, 25, 238, 297, 351, 434
MboI	GATC	6 cut(s)	8, 23, 236, 295, 349, 432
MboII	GAAGA	4 cut(s)	18, 159, 631, 913
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	2 cut(s)	8, 236
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	120, 372, 462, 509
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	804, 1014
MmeI	TCCRAC	1 cut(s)	229
Mox20I	TGGCCA	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	799
MroXI	GAANNNNTTC	1 cut(s)	748
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	5 cut(s)	153, 363, 426, 480, 591
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	314, 470
MspI	CCGG	4 cut(s)	72, 114, 599, 777
MspR9I	CCNGG	3 cut(s)	201, 333, 547
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	842
MvaI	CCWGG	3 cut(s)	201, 333, 547
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	44, 566, 788
NcoI	CCATGG	1 cut(s)	765
NdeII	GATC	6 cut(s)	8, 23, 236, 295, 349, 432
NlaIII	CATG	6 cut(s)	148, 259, 419, 617, 769, 801
NlaIV	GGNNCC	3 cut(s)	76, 109, 933
NmuCI	GTSAC	3 cut(s)	221, 344, 674
NsiI	ATGCAT	1 cut(s)	799
NspI	RCATGY	2 cut(s)	419, 801
PaeI	GCATGC	1 cut(s)	801
PagI	TCATGA	1 cut(s)	144
PctI	GAATGC	1 cut(s)	842
PdmI	GAANNNNTTC	1 cut(s)	748
PflFI	GACNNNGTC	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	112, 211, 469
PleI	GAGTC	2 cut(s)	804, 1013
PpsI	GAGTC	2 cut(s)	804, 1013
Ppu21I	YACGTR	1 cut(s)	847
PshBI	ATTAAT	2 cut(s)	363, 426
Psp6I	CCWGG	3 cut(s)	199, 331, 545
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	3 cut(s)	199, 331, 545
PspN4I	GGNNCC	3 cut(s)	76, 109, 933
PspPI	GGNCC	2 cut(s)	543, 932
PsuI	RGATCY	2 cut(s)	8, 236
PsyI	GACNNNGTC	1 cut(s)	536
PvuII	CAGCTG	2 cut(s)	314, 470
RsaI	GTAC	5 cut(s)	321, 407, 497, 703, 718
RsaNI	GTAC	5 cut(s)	320, 406, 496, 702, 717
SaqAI	TTAA	5 cut(s)	153, 363, 426, 480, 591
SatI	GCNGC	3 cut(s)	111, 210, 468
Sau3AI	GATC	6 cut(s)	8, 23, 236, 295, 349, 432
Sau96I	GGNCC	2 cut(s)	543, 932
ScaI	AGTACT	1 cut(s)	407
SchI	GAGTC	2 cut(s)	804, 1014
ScrFI	CCNGG	3 cut(s)	201, 333, 547
SfaNI	GCATC	1 cut(s)	784
SgrAI	CRCCGGYG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	932
SmlI	CTYRAG	2 cut(s)	657, 983
SmoI	CTYRAG	2 cut(s)	657, 983
SphI	GCATGC	1 cut(s)	801
Sse9I	AATT	4 cut(s)	120, 372, 462, 509
SsiI	CCGC	5 cut(s)	36, 47, 55, 111, 687
StyD4I	CCNGG	3 cut(s)	199, 331, 545
StyI	CCWWGG	3 cut(s)	103, 323, 765
TaaI	ACNGT	2 cut(s)	457, 818
TaiI	ACGT	2 cut(s)	537, 849
TaqI	TCGA	1 cut(s)	884
TasI	AATT	4 cut(s)	120, 372, 462, 509
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	1 cut(s)	113
Tru1I	TTAA	5 cut(s)	153, 363, 426, 480, 591
Tru9I	TTAA	5 cut(s)	153, 363, 426, 480, 591
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	3 cut(s)	221, 344, 674
TseI	GCWGC	2 cut(s)	209, 467
Tsp45I	GTSAC	3 cut(s)	221, 344, 674
TspDTI	ATGAA	2 cut(s)	161, 516
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	397
Tth111I	GACNNNGTC	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	932
VspI	ATTAAT	2 cut(s)	363, 426
XceI	RCATGY	2 cut(s)	419, 801
XmnI	GAANNNNTTC	1 cut(s)	748
ZraI	GACGTC	1 cut(s)	535
ZrmI	AGTACT	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.